Wall clock time and date at job start Tue Mar 31 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37843 * 120.06284 * 2 1 4 4 C 1.38650 * 120.12563 * 179.97438 * 3 2 1 5 5 F 1.35093 * 119.87527 * 179.97438 * 4 3 2 6 6 C 1.38691 * 120.24442 * 359.74291 * 4 3 2 7 7 C 1.37799 * 120.12882 * 0.50773 * 6 4 3 8 8 C 1.39688 * 120.06604 * 179.97438 * 2 1 3 9 9 C 1.47605 * 120.11934 * 0.04264 * 8 2 1 10 10 O 1.21487 * 119.99905 * 353.74388 * 9 8 2 11 11 O 1.34723 * 119.99802 * 173.73920 * 9 8 2 12 12 C 1.45199 * 117.00228 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47594 * 180.02562 * 12 11 9 14 14 O 1.42902 * 109.46909 * 65.00093 * 13 12 11 15 15 C 1.42899 * 114.00154 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47279 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99983 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00128 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99909 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99852 * 0.02562 * 18 16 15 21 21 H 1.48490 * 109.47374 * 89.99628 * 20 18 16 22 22 H 1.48503 * 109.46922 * 210.00008 * 20 18 16 23 23 H 1.48498 * 109.46759 * 329.99269 * 20 18 16 24 24 H 1.09004 * 109.46716 * 263.43209 * 1 2 3 25 25 H 1.08996 * 109.46790 * 23.43205 * 1 2 3 26 26 H 1.09001 * 109.46882 * 143.43580 * 1 2 3 27 27 H 1.07997 * 119.94054 * 359.95276 * 3 2 1 28 28 H 1.08007 * 119.93579 * 180.26080 * 6 4 3 29 29 H 1.07999 * 120.06668 * 179.76517 * 7 6 4 30 30 H 1.08997 * 109.46992 * 300.00742 * 12 11 9 31 31 H 1.09001 * 109.46536 * 60.00117 * 12 11 9 32 32 H 1.09000 * 109.47406 * 185.00421 * 13 12 11 33 33 H 1.09003 * 109.47134 * 305.00525 * 13 12 11 34 34 H 1.09002 * 109.47586 * 300.00472 * 15 14 13 35 35 H 1.09003 * 109.47050 * 60.00458 * 15 14 13 36 36 H 0.96994 * 119.99863 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1930 0.0000 4 6 3.5841 1.1945 0.0005 5 9 4.2557 2.3667 0.0000 6 6 4.2839 -0.0028 0.0065 7 6 3.6041 -1.2014 0.0013 8 6 2.2069 -1.2089 0.0005 9 6 1.4730 -2.4896 0.0002 10 8 0.2635 -2.4966 0.1140 11 8 2.1445 -3.6507 -0.1266 12 6 1.3581 -4.8713 -0.1181 13 6 2.2868 -6.0774 -0.2711 14 8 3.1400 -6.1695 0.8716 15 6 4.0516 -7.2692 0.8292 16 6 4.8967 -7.2695 2.0770 17 1 4.7518 -6.5065 2.8276 18 6 5.8542 -8.2445 2.2610 19 7 6.5912 -8.2451 3.3501 20 14 6.1043 -9.5645 0.9631 21 1 7.1171 -9.1056 -0.0210 22 1 6.5757 -10.8141 1.6125 23 1 4.8187 -9.8235 0.2664 24 1 -0.3633 -0.1176 1.0210 25 1 -0.3633 0.9429 -0.4087 26 1 -0.3633 -0.8254 -0.6122 27 1 1.6576 2.1283 -0.0008 28 1 5.3640 0.0042 0.0111 29 1 4.1501 -2.1332 0.0021 30 1 0.8160 -4.9477 0.8244 31 1 0.6482 -4.8517 -0.9450 32 1 1.6912 -6.9865 -0.3540 33 1 2.8935 -5.9574 -1.1687 34 1 3.4923 -8.2028 0.7694 35 1 4.6949 -7.1743 -0.0456 36 1 7.2650 -8.9307 3.4793 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815222048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:34 Heat of formation + Delta-G solvation = -172.341200 kcal Electronic energy + Delta-G solvation = -21079.718820 eV Core-core repulsion = 17442.992184 eV Total energy + Delta-G solvation = -3636.726636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.08440 -41.78913 -39.88585 -38.73686 -37.46273 -34.89195 -33.78485 -32.53180 -31.49381 -29.57379 -28.33267 -25.31260 -24.07327 -23.80501 -22.92320 -21.99977 -19.17416 -19.10659 -18.32558 -18.03188 -17.92600 -17.31565 -17.07047 -16.72714 -16.40154 -16.34103 -15.65013 -15.03699 -14.85758 -14.62662 -14.54430 -14.35019 -14.15760 -13.95430 -13.71228 -13.36599 -13.14356 -12.97257 -12.85670 -12.61759 -12.30768 -12.11775 -11.85298 -11.71668 -11.36216 -11.23252 -10.92755 -10.40262 -10.10006 -9.90844 -8.36692 -6.45266 -0.58077 0.09107 1.32319 1.35126 1.38462 1.49065 1.57493 2.30458 2.46097 2.95610 2.96720 3.00726 3.49606 3.57012 3.71033 3.93343 4.00176 4.11205 4.14835 4.38225 4.48462 4.55175 4.55638 4.64081 4.71019 4.76910 4.79993 4.96284 5.00061 5.01513 5.14875 5.24294 5.43233 5.48627 5.68800 5.91560 6.58516 6.62877 6.71985 7.19158 8.80589 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020244 B = 0.003458 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.775493 B = 8095.538801 C = 9125.674933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.006 3.994 3 C -0.164 4.164 4 C 0.135 3.865 5 F -0.133 7.133 6 C -0.173 4.173 7 C -0.031 4.031 8 C -0.161 4.161 9 C 0.507 3.493 10 O -0.519 6.519 11 O -0.354 6.354 12 C 0.075 3.925 13 C 0.049 3.951 14 O -0.407 6.407 15 C 0.179 3.821 16 C -0.549 4.549 17 H 0.027 0.973 18 C 0.012 3.988 19 N -0.943 5.943 20 Si 0.957 3.043 21 H -0.259 1.259 22 H -0.275 1.275 23 H -0.241 1.241 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.172 0.828 28 H 0.161 0.839 29 H 0.147 0.853 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.018 0.982 35 H 0.016 0.984 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.666 16.719 -12.889 23.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.006 3.994 3 C -0.182 4.182 4 C 0.116 3.884 5 F -0.112 7.112 6 C -0.192 4.192 7 C -0.049 4.049 8 C -0.162 4.162 9 C 0.354 3.646 10 O -0.411 6.411 11 O -0.271 6.271 12 C 0.002 3.998 13 C -0.027 4.027 14 O -0.327 6.327 15 C 0.103 3.897 16 C -0.586 4.586 17 H 0.046 0.954 18 C -0.186 4.186 19 N -0.583 5.583 20 Si 0.778 3.222 21 H -0.183 1.183 22 H -0.201 1.201 23 H -0.164 1.164 24 H 0.098 0.902 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.190 0.810 28 H 0.179 0.821 29 H 0.165 0.835 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.033 0.967 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.866 16.756 -12.606 23.616 hybrid contribution 0.580 -0.678 0.028 0.893 sum -10.285 16.078 -12.577 22.858 Atomic orbital electron populations 1.21147 0.88251 1.04454 1.03883 1.20033 0.97868 0.90033 0.91473 1.21190 0.91862 0.99713 1.05454 1.18112 0.90595 0.81210 0.98488 1.91532 1.80570 1.45793 1.93269 1.21328 1.02489 0.90306 1.05057 1.21454 0.92532 0.99306 0.91618 1.19161 0.94074 0.90235 1.12713 1.21316 0.85840 0.84877 0.72607 1.90759 1.15330 1.88006 1.46994 1.86622 1.42244 1.15290 1.82906 1.23279 0.93041 0.79480 1.03978 1.22773 0.93420 0.96592 0.89917 1.87923 1.51452 1.51034 1.42312 1.20358 0.88022 0.85595 0.95709 1.21182 1.19123 1.13367 1.04956 0.95443 1.25874 0.94206 1.00115 0.98365 1.70037 1.23196 1.36252 1.28791 0.85581 0.80332 0.77608 0.78651 1.18342 1.20059 1.16421 0.90231 0.88897 0.89982 0.81046 0.82124 0.83544 0.91199 0.86823 0.89007 0.91490 0.96409 0.96676 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 8.73 71.24 0.62 -1.52 16 2 C 0.01 0.13 5.91 -19.61 -0.12 0.01 16 3 C -0.16 -2.74 9.64 22.27 0.21 -2.53 16 4 C 0.14 2.53 7.31 22.48 0.16 2.70 16 5 F -0.13 -2.52 17.26 44.97 0.78 -1.74 16 6 C -0.17 -3.41 10.01 22.27 0.22 -3.19 16 7 C -0.03 -0.72 9.61 22.53 0.22 -0.50 16 8 C -0.16 -4.00 5.87 -20.10 -0.12 -4.12 16 9 C 0.51 14.76 7.82 70.29 0.55 15.31 16 10 O -0.52 -15.73 13.13 19.88 0.26 -15.47 16 11 O -0.35 -11.16 9.46 -53.67 -0.51 -11.67 16 12 C 0.08 2.13 5.85 71.98 0.42 2.55 16 13 C 0.05 1.55 6.33 71.98 0.46 2.00 16 14 O -0.41 -18.53 10.30 -145.57 -1.50 -20.03 16 15 C 0.18 8.72 4.76 71.24 0.34 9.06 16 16 C -0.55 -33.22 9.99 25.60 0.26 -32.96 16 17 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 18 C 0.01 0.72 5.47 84.66 0.46 1.18 16 19 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 20 Si 0.96 42.39 27.47 68.60 1.88 44.27 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 24 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.09 1.06 8.04 -2.39 -0.02 1.04 16 26 H 0.08 1.74 5.85 -2.39 -0.01 1.73 16 27 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 28 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 29 H 0.15 3.60 7.62 -2.91 -0.02 3.58 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 35 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 36 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -72.52 319.10 5.94 -66.58 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.04 Total: 8.94 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 3.69 Total: -12.01 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.30 Total: -58.88 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -1.75 Total: -47.17 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.78 Total: -1.74 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.27 kcal Total: -72.52 5.94 -66.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815222048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.759 kcal (2) G-P(sol) polarization free energy of solvation -72.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds