Wall clock time and date at job start Tue Mar 31 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99913 * 2 1 4 4 H 1.48506 * 109.46782 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46888 * 299.99507 * 3 2 1 6 6 H 1.48501 * 109.47001 * 59.99791 * 3 2 1 7 7 C 1.37875 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99706 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00358 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.47479 * 180.02562 * 9 7 2 11 11 C 1.42893 * 114.00408 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47686 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47142 * 64.99657 * 12 11 10 14 14 C 1.34222 * 116.99867 * 180.02562 * 13 12 11 15 15 O 1.20830 * 120.00323 * 359.72425 * 14 13 12 16 16 C 1.50706 * 120.00024 * 180.02562 * 14 13 12 17 17 H 1.08994 * 109.46574 * 14.72047 * 16 14 13 18 18 F 1.39899 * 109.46808 * 254.72557 * 16 14 13 19 19 C 1.50697 * 109.47322 * 134.72131 * 16 14 13 20 20 C 1.38235 * 119.99663 * 64.73049 * 19 16 14 21 21 C 1.38237 * 119.99727 * 179.81160 * 20 19 16 22 22 C 1.38229 * 120.00200 * 0.39422 * 21 20 19 23 23 C 1.38240 * 119.99674 * 359.85612 * 22 21 20 24 24 C 1.38230 * 120.00111 * 245.00343 * 19 16 14 25 25 H 0.97010 * 119.99883 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47035 * 59.99424 * 9 7 2 27 27 H 1.09002 * 109.46501 * 300.00085 * 9 7 2 28 28 H 1.09008 * 109.47235 * 59.99414 * 11 10 9 29 29 H 1.09000 * 109.46834 * 299.99885 * 11 10 9 30 30 H 1.09009 * 109.46963 * 305.00058 * 12 11 10 31 31 H 1.09001 * 109.47306 * 184.99964 * 12 11 10 32 32 H 1.08007 * 120.00478 * 359.97438 * 20 19 16 33 33 H 1.08007 * 119.99825 * 180.23057 * 21 20 19 34 34 H 1.08002 * 120.00659 * 179.83855 * 22 21 20 35 35 H 1.07999 * 119.99766 * 179.97438 * 23 22 21 36 36 H 1.08003 * 119.99879 * 359.97438 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5651 -4.8754 0.0013 12 6 2.6480 -5.9562 0.0020 13 8 3.3984 -5.8886 1.2432 14 6 4.3929 -6.7757 1.4030 15 8 4.6255 -7.5853 0.5367 16 6 5.2152 -6.7665 2.6659 17 1 4.7089 -6.1698 3.4246 18 9 6.4723 -6.2132 2.3998 19 6 5.3833 -8.1780 3.1663 20 6 6.0884 -9.0986 2.4139 21 6 6.2459 -10.3923 2.8747 22 6 5.6914 -10.7676 4.0840 23 6 4.9819 -9.8483 4.8340 24 6 4.8276 -8.5536 4.3750 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 0.9458 -4.9826 -0.8894 29 1 0.9440 -4.9822 0.8906 30 1 3.3222 -5.7956 -0.8394 31 1 2.1820 -6.9375 -0.0879 32 1 6.5186 -8.8064 1.4672 33 1 6.8001 -11.1107 2.2886 34 1 5.8122 -11.7791 4.4429 35 1 4.5483 -10.1416 5.7786 36 1 4.2733 -7.8353 4.9609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815233192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:33 Heat of formation + Delta-G solvation = -156.398771 kcal Electronic energy + Delta-G solvation = -21021.861002 eV Core-core repulsion = 17385.825682 eV Total energy + Delta-G solvation = -3636.035320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.19250 -40.51572 -39.31207 -37.16178 -36.15750 -32.88189 -32.74256 -31.22336 -30.32032 -27.88340 -26.86098 -23.24206 -22.95463 -22.39919 -21.89931 -20.85787 -18.26155 -17.60180 -17.13825 -16.71326 -16.38632 -16.15530 -15.92135 -15.23788 -14.75136 -14.67520 -14.51816 -14.40822 -14.01241 -13.70825 -13.14514 -13.05356 -12.87964 -12.61559 -12.31663 -11.96503 -11.49860 -11.45319 -11.28671 -10.97309 -10.89210 -10.76746 -10.50606 -10.40027 -10.06773 -9.26640 -9.21624 -9.13621 -8.91076 -8.24347 -6.13736 -4.15380 0.83728 1.09791 1.92867 2.40982 3.28510 3.35043 3.42034 3.43191 3.94624 4.30376 4.36546 4.38733 4.64912 4.68917 4.71376 4.81957 4.91736 5.12613 5.15739 5.23100 5.30034 5.38428 5.54090 5.73136 5.79405 5.85636 5.99138 6.08010 6.17655 6.18341 6.37505 6.62495 7.02022 7.36794 7.55438 7.76805 8.10086 8.49047 8.97528 9.49643 10.97839 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.029818 B = 0.002951 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.816298 B = 9487.502063 C = 9772.449021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.068 0.932 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.073 3.927 13 O -0.331 6.331 14 C 0.444 3.556 15 O -0.490 6.490 16 C 0.157 3.843 17 H 0.126 0.874 18 F -0.175 7.175 19 C -0.135 4.135 20 C -0.070 4.070 21 C -0.126 4.126 22 C -0.104 4.104 23 C -0.127 4.127 24 C -0.090 4.090 25 H 0.264 0.736 26 H 0.007 0.993 27 H 0.008 0.992 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.621 -20.868 8.502 24.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.000 4.000 13 O -0.246 6.246 14 C 0.284 3.716 15 O -0.377 6.377 16 C 0.119 3.881 17 H 0.144 0.856 18 F -0.155 7.155 19 C -0.135 4.135 20 C -0.088 4.088 21 C -0.144 4.144 22 C -0.122 4.122 23 C -0.145 4.145 24 C -0.108 4.108 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.026 0.974 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.731 -20.915 8.197 24.101 hybrid contribution 0.016 0.856 -0.237 0.888 sum 8.747 -20.059 7.960 23.286 Atomic orbital electron populations 1.69972 1.06113 1.27118 1.50615 1.24953 0.94996 0.99489 0.95084 0.86271 0.80078 0.82474 0.77638 1.19412 1.20823 1.20792 1.21090 0.94172 0.89255 1.50760 0.91416 1.20251 0.88735 0.83480 0.95544 1.87923 1.35343 1.12584 1.95232 1.22327 0.93114 0.85466 1.00733 1.23334 0.93731 0.99102 0.83835 1.86606 1.42858 1.53197 1.41982 1.23756 0.80252 0.78849 0.88736 1.90656 1.67000 1.37149 1.42858 1.19740 0.80493 0.93677 0.94141 0.85622 1.92953 1.40984 1.86442 1.95150 1.19730 1.03099 0.93757 0.96920 1.21163 0.95807 0.92823 0.98968 1.21191 1.00518 0.96154 0.96576 1.21298 0.96638 0.99600 0.94660 1.21127 0.99876 0.93202 1.00341 1.21053 0.98144 0.96966 0.94596 0.92669 0.97559 0.97450 0.91721 0.93066 0.90164 0.90124 0.84925 0.85535 0.85726 0.85419 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -15.18 9.43 -34.44 -0.32 -15.51 16 8 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 9 C 0.19 5.28 5.69 36.00 0.20 5.49 16 10 O -0.39 -9.43 10.30 -38.80 -0.40 -9.83 16 11 C 0.06 1.10 6.33 37.16 0.24 1.33 16 12 C 0.07 1.14 5.84 37.16 0.22 1.36 16 13 O -0.33 -5.45 10.19 -42.00 -0.43 -5.88 16 14 C 0.44 6.63 7.29 36.01 0.26 6.89 16 15 O -0.49 -7.97 14.92 -18.75 -0.28 -8.25 16 16 C 0.16 1.91 4.07 -29.03 -0.12 1.80 16 17 H 0.13 1.22 7.88 -51.93 -0.41 0.81 16 18 F -0.17 -2.42 16.92 2.25 0.04 -2.39 16 19 C -0.13 -1.49 5.01 -104.63 -0.52 -2.02 16 20 C -0.07 -0.78 8.57 -39.58 -0.34 -1.11 16 21 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 22 C -0.10 -0.81 10.05 -39.58 -0.40 -1.21 16 23 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 24 C -0.09 -0.80 9.67 -39.59 -0.38 -1.19 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 31 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 32 H 0.13 1.57 7.39 -52.48 -0.39 1.18 16 33 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.89 7.95 -52.48 -0.42 0.47 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -33.55 326.34 -7.06 -40.61 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -4.56 Total: -4.40 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.06 Total: -5.59 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.74 Total: -26.02 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -1.11 Total: -23.96 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.55 -7.06 -40.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815233192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.791 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds