Wall clock time and date at job start Tue Mar 31 2020 05:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99998 * 2 1 4 4 H 1.48494 * 109.47334 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47253 * 30.00364 * 3 2 1 6 6 H 1.48502 * 109.47116 * 149.99901 * 3 2 1 7 7 C 1.37874 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00289 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00032 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.46834 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99579 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47348 * 179.97438 * 11 10 9 13 13 O 1.45204 * 109.47066 * 64.99843 * 12 11 10 14 14 C 1.34225 * 116.99967 * 179.97438 * 13 12 11 15 15 O 1.20825 * 120.00070 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99772 * 180.02562 * 14 13 12 17 17 H 1.09004 * 109.46909 * 345.00264 * 16 14 13 18 18 F 1.39897 * 109.47311 * 105.00259 * 16 14 13 19 19 C 1.50703 * 109.47036 * 225.00679 * 16 14 13 20 20 C 1.38235 * 120.00292 * 115.00044 * 19 16 14 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 16 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 294.97336 * 19 16 14 25 25 H 0.97003 * 119.99907 * 0.02562 * 1 2 3 26 26 H 1.08987 * 109.47056 * 59.99347 * 9 7 2 27 27 H 1.09002 * 109.46723 * 299.99382 * 9 7 2 28 28 H 1.09009 * 109.47194 * 59.99495 * 11 10 9 29 29 H 1.08996 * 109.47183 * 300.00133 * 11 10 9 30 30 H 1.09002 * 109.46889 * 305.00509 * 12 11 10 31 31 H 1.09000 * 109.47408 * 185.00306 * 12 11 10 32 32 H 1.08001 * 119.99730 * 359.97438 * 20 19 16 33 33 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 34 34 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 35 35 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 36 36 H 1.07997 * 120.00455 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0017 11 6 1.5651 -4.8754 0.0024 12 6 2.6480 -5.9562 0.0030 13 8 3.3993 -5.8879 1.2438 14 6 4.3933 -6.7756 1.4039 15 8 4.6282 -7.5826 0.5359 16 6 5.2163 -6.7656 2.6663 17 1 5.0492 -5.8308 3.2015 18 9 4.8392 -7.8412 3.4774 19 6 6.6766 -6.8890 2.3149 20 6 7.5433 -5.8469 2.5861 21 6 8.8828 -5.9604 2.2642 22 6 9.3558 -7.1165 1.6720 23 6 8.4894 -8.1592 1.4022 24 6 7.1494 -8.0448 1.7220 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8895 27 1 0.6241 -2.5567 0.8904 28 1 0.9452 -4.9831 -0.8878 29 1 0.9446 -4.9818 0.8922 30 1 3.3216 -5.7960 -0.8388 31 1 2.1820 -6.9375 -0.0861 32 1 7.1738 -4.9439 3.0494 33 1 9.5600 -5.1461 2.4757 34 1 10.4016 -7.2035 1.4165 35 1 8.8588 -9.0623 0.9391 36 1 6.4723 -8.8590 1.5101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815233193.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:35 Heat of formation + Delta-G solvation = -156.783030 kcal Electronic energy + Delta-G solvation = -21117.724274 eV Core-core repulsion = 17481.672292 eV Total energy + Delta-G solvation = -3636.051983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.23908 -40.50401 -39.25224 -37.16194 -36.15777 -32.86289 -32.72637 -31.15278 -30.31726 -27.86113 -26.86579 -23.22010 -22.89185 -22.40680 -21.87840 -20.84308 -18.26050 -17.57243 -17.14186 -16.70190 -16.38759 -16.13136 -15.91669 -15.22319 -14.77421 -14.59601 -14.57139 -14.33517 -14.05707 -13.64289 -13.15410 -13.03101 -12.81923 -12.61212 -12.31333 -11.96547 -11.49541 -11.40528 -11.24401 -10.99362 -10.87780 -10.80682 -10.49647 -10.40488 -10.08233 -9.19861 -9.16475 -9.14488 -8.91607 -8.25225 -6.14735 -4.16700 0.89915 1.17182 1.94492 2.40562 3.28244 3.33323 3.38475 3.49989 3.97157 4.28836 4.37405 4.41012 4.67517 4.71372 4.77078 4.88792 4.95418 5.12940 5.21966 5.22367 5.36381 5.38076 5.60973 5.79377 5.79850 5.85761 5.99780 6.15609 6.23177 6.24923 6.37953 6.69350 7.01608 7.36191 7.55730 7.74886 8.08997 8.47970 8.95568 9.48229 10.96820 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.018377 B = 0.003497 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.278987 B = 8004.725266 C = 8996.345206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.073 3.927 13 O -0.331 6.331 14 C 0.444 3.556 15 O -0.489 6.489 16 C 0.156 3.844 17 H 0.128 0.872 18 F -0.178 7.178 19 C -0.135 4.135 20 C -0.087 4.087 21 C -0.126 4.126 22 C -0.103 4.103 23 C -0.128 4.128 24 C -0.070 4.070 25 H 0.265 0.735 26 H 0.006 0.994 27 H 0.008 0.992 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.921 -15.511 5.047 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.000 4.000 13 O -0.247 6.247 14 C 0.284 3.716 15 O -0.376 6.376 16 C 0.119 3.881 17 H 0.145 0.855 18 F -0.159 7.159 19 C -0.136 4.136 20 C -0.105 4.105 21 C -0.144 4.144 22 C -0.121 4.121 23 C -0.146 4.146 24 C -0.088 4.088 25 H 0.074 0.926 26 H 0.024 0.976 27 H 0.026 0.974 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.975 -15.606 4.779 21.487 hybrid contribution -0.123 0.720 -0.176 0.751 sum 13.852 -14.886 4.603 20.849 Atomic orbital electron populations 1.69957 1.06118 1.27244 1.50434 1.24947 0.94989 0.99463 0.95067 0.86324 0.79672 0.82172 0.78259 1.20446 1.21032 1.19587 1.21043 0.94098 0.89278 1.51000 0.91499 1.20247 0.88733 0.83443 0.95561 1.87914 1.35375 1.12607 1.95247 1.22331 0.93138 0.85412 1.00776 1.23331 0.93696 0.99145 0.83816 1.86607 1.42683 1.53366 1.42005 1.23741 0.79722 0.79042 0.89063 1.90655 1.66901 1.37317 1.42771 1.19756 0.90151 0.90716 0.87474 0.85466 1.92931 1.92400 1.57723 1.72796 1.19688 0.92771 0.96882 1.04232 1.21086 0.93435 0.97739 0.98248 1.21142 0.95344 0.98236 0.99707 1.21299 0.99893 0.93480 0.97464 1.21172 0.93253 0.99362 1.00766 1.21118 0.95861 0.97114 0.94752 0.92592 0.97570 0.97431 0.91712 0.93018 0.90187 0.90109 0.84936 0.85344 0.85721 0.85586 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -15.08 9.43 -34.44 -0.32 -15.41 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.19 5.26 5.69 36.01 0.20 5.46 16 10 O -0.39 -9.36 10.30 -38.80 -0.40 -9.76 16 11 C 0.06 1.10 6.33 37.16 0.24 1.33 16 12 C 0.07 1.15 5.84 37.16 0.22 1.36 16 13 O -0.33 -5.46 10.19 -42.01 -0.43 -5.89 16 14 C 0.44 6.65 7.29 36.01 0.26 6.91 16 15 O -0.49 -7.99 14.95 -18.75 -0.28 -8.27 16 16 C 0.16 1.91 4.07 -29.03 -0.12 1.79 16 17 H 0.13 1.28 7.89 -51.93 -0.41 0.87 16 18 F -0.18 -2.28 16.92 2.25 0.04 -2.24 16 19 C -0.14 -1.60 5.01 -104.62 -0.52 -2.12 16 20 C -0.09 -0.90 9.67 -39.59 -0.38 -1.28 16 21 C -0.13 -1.16 10.05 -39.59 -0.40 -1.55 16 22 C -0.10 -0.91 10.05 -39.58 -0.40 -1.31 16 23 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.07 -0.82 8.57 -39.58 -0.34 -1.16 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.01 0.18 8.14 -51.94 -0.42 -0.24 16 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.08 1.05 8.13 -51.93 -0.42 0.62 16 32 H 0.13 1.12 7.95 -52.49 -0.42 0.71 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.13 1.56 7.41 -52.49 -0.39 1.17 16 LS Contribution 326.38 15.07 4.92 4.92 Total: -1.00 -33.08 326.38 -7.06 -40.14 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -4.57 Total: -3.53 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -2.06 Total: -6.08 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.88 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -1.11 Total: -23.92 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.08 -7.06 -40.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815233193.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.644 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds