Wall clock time and date at job start Tue Mar 31 2020 05:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00184 * 2 1 4 4 C 1.53005 * 109.47183 * 124.99832 * 3 2 1 5 5 F 1.39902 * 109.46875 * 60.00249 * 4 3 2 6 6 F 1.39897 * 109.46965 * 300.00384 * 4 3 2 7 7 C 1.50704 * 109.46952 * 180.02562 * 4 3 2 8 8 O 1.21270 * 120.00065 * 25.00123 * 7 4 3 9 9 N 1.34776 * 119.99891 * 205.00419 * 7 4 3 10 10 C 1.39463 * 120.00445 * 185.07094 * 9 7 4 11 11 C 1.38593 * 119.58331 * 185.36443 * 10 9 7 12 12 C 1.40812 * 118.79483 * 179.69861 * 11 10 9 13 13 C 1.41537 * 120.99613 * 180.24780 * 12 11 10 14 14 H 1.08000 * 120.00181 * 153.75427 * 13 12 11 15 15 C 1.40040 * 120.00262 * 333.75863 * 13 12 11 16 16 N 1.30739 * 119.99369 * 350.15263 * 15 13 12 17 17 Si 1.86791 * 120.00226 * 170.15290 * 15 13 12 18 18 H 1.48497 * 109.47392 * 89.99661 * 17 15 13 19 19 H 1.48501 * 109.47267 * 209.99991 * 17 15 13 20 20 H 1.48504 * 109.47152 * 330.00186 * 17 15 13 21 21 C 1.41173 * 118.00711 * 0.27126 * 12 11 10 22 22 C 1.37588 * 119.01788 * 0.02562 * 21 12 11 23 23 N 1.32083 * 121.11061 * 0.02562 * 22 21 12 24 24 H 1.07994 * 120.00131 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.99873 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99873 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.46821 * 5.00120 * 3 2 1 28 28 H 1.08992 * 109.47308 * 245.00516 * 3 2 1 29 29 H 0.97002 * 119.99781 * 5.06300 * 9 7 4 30 30 H 1.07998 * 120.60226 * 359.96467 * 11 10 9 31 31 H 0.97005 * 119.99764 * 179.97438 * 16 15 13 32 32 H 1.08001 * 120.49191 * 179.97438 * 21 12 11 33 33 H 1.07995 * 119.44792 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 9 3.9398 0.2722 1.0667 6 9 2.3191 1.2079 2.3770 7 6 3.7881 2.6384 1.1820 8 8 3.3033 3.6183 0.6571 9 7 5.0005 2.7168 1.7655 10 6 5.6510 3.9469 1.8595 11 6 6.9426 4.0014 2.3592 12 6 7.5860 5.2513 2.4408 13 6 8.9065 5.3601 2.9387 14 1 9.5358 6.1801 2.6255 15 6 9.3970 4.4047 3.8374 16 7 8.5850 3.5265 4.3654 17 14 11.2112 4.3850 4.2817 18 1 11.4406 5.2528 5.4647 19 1 11.6282 2.9955 4.5987 20 1 12.0072 4.8913 3.1348 21 6 6.8745 6.3925 2.0116 22 6 5.5926 6.2398 1.5357 23 7 5.0239 5.0492 1.4762 24 1 -0.5400 -0.9352 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4026 -0.9313 29 1 5.4206 1.9177 2.1203 30 1 7.4479 3.1011 2.6762 31 1 8.9248 2.8644 4.9876 32 1 7.3293 7.3710 2.0570 33 1 5.0420 7.1081 1.2051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815821769.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:01 Heat of formation + Delta-G solvation = -76.956115 kcal Electronic energy + Delta-G solvation = -21513.908013 eV Core-core repulsion = 17790.150032 eV Total energy + Delta-G solvation = -3723.757982 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.15237 -47.12840 -39.73503 -37.95992 -35.31225 -34.48300 -33.88590 -30.67468 -30.09147 -28.70938 -26.10602 -24.94633 -22.10912 -21.62986 -20.26607 -19.95802 -18.19227 -17.89593 -17.70135 -16.79022 -15.81675 -15.43625 -15.06900 -14.90519 -14.50448 -14.28948 -14.00808 -13.85303 -13.53905 -13.43685 -13.19813 -12.84443 -12.68363 -12.52794 -12.41896 -11.84105 -11.51301 -11.31981 -11.22963 -10.97900 -10.39671 -10.25178 -9.97488 -9.80655 -9.53122 -9.47873 -8.09876 -7.89858 -7.20245 -6.83927 -4.70863 1.96592 2.15524 2.72652 2.88781 2.98145 2.99111 3.03058 3.23333 3.78683 3.80689 4.05341 4.43229 4.54734 4.63333 4.87487 4.99958 5.42701 5.56297 5.61160 5.69052 5.81355 6.36304 6.40595 6.47486 6.48054 6.68848 6.83923 7.03428 7.22040 7.32749 7.51855 7.80768 8.02655 8.20803 8.46816 8.64192 8.67837 9.51892 10.02406 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028240 B = 0.004176 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.248321 B = 6703.549129 C = 7451.388762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.162 4.162 3 C -0.121 4.121 4 C 0.287 3.713 5 F -0.190 7.190 6 F -0.180 7.180 7 C 0.473 3.527 8 O -0.446 6.446 9 N -0.638 5.638 10 C 0.328 3.672 11 C -0.230 4.230 12 C 0.141 3.859 13 C -0.452 4.452 14 H 0.083 0.917 15 C 0.075 3.925 16 N -0.793 5.793 17 Si 0.916 3.084 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.278 4.278 22 C 0.119 3.881 23 N -0.557 5.557 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.415 0.585 30 H 0.135 0.865 31 H 0.283 0.717 32 H 0.105 0.895 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.349 -7.548 -4.432 11.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.180 4.180 3 C -0.159 4.159 4 C 0.247 3.753 5 F -0.171 7.171 6 F -0.161 7.161 7 C 0.252 3.748 8 O -0.314 6.314 9 N -0.284 5.284 10 C 0.104 3.896 11 C -0.256 4.256 12 C 0.133 3.867 13 C -0.483 4.483 14 H 0.101 0.899 15 C -0.144 4.144 16 N -0.419 5.419 17 Si 0.740 3.260 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.184 1.184 21 C -0.302 4.302 22 C -0.035 4.035 23 N -0.276 5.276 24 H 0.121 0.879 25 H 0.119 0.881 26 H 0.135 0.865 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.252 0.748 30 H 0.153 0.847 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.623 -7.151 -4.944 12.245 hybrid contribution 1.917 -0.622 1.075 2.284 sum -6.706 -7.773 -3.869 10.971 Atomic orbital electron populations 1.23922 0.95641 1.02299 0.99158 1.22750 0.96285 0.97473 1.01509 1.21603 0.98737 0.98853 0.96662 1.21489 0.85106 0.84048 0.84690 1.93030 1.68580 1.59317 1.96192 1.93072 1.78553 1.96180 1.48336 1.20693 0.83180 0.89379 0.81540 1.90841 1.65846 1.34934 1.39829 1.43354 1.17909 1.10250 1.56929 1.18141 0.89636 0.84411 0.97421 1.21691 0.93511 1.00410 1.09958 1.17593 0.92607 0.89688 0.86823 1.19600 0.97402 1.08975 1.22319 0.89884 1.25982 1.00226 0.93776 0.94425 1.69725 1.36444 1.13762 1.21934 0.86172 0.81583 0.78474 0.79723 1.19332 1.19980 1.18377 1.21950 0.96723 0.98432 1.13072 1.21743 0.92536 0.93094 0.96145 1.67105 1.37700 0.97482 1.25318 0.87941 0.88138 0.86489 0.87111 0.87377 0.74832 0.84722 0.90605 0.87714 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 14.32 29.01 0.42 -1.16 16 2 C -0.16 -1.70 9.00 -36.03 -0.32 -2.02 16 3 C -0.12 -1.49 4.79 -27.88 -0.13 -1.62 16 4 C 0.29 4.30 2.01 -27.88 -0.06 4.25 16 5 F -0.19 -2.70 16.16 2.25 0.04 -2.66 16 6 F -0.18 -2.85 16.75 2.25 0.04 -2.82 16 7 C 0.47 8.98 7.18 -10.98 -0.08 8.91 16 8 O -0.45 -9.73 14.39 5.57 0.08 -9.65 16 9 N -0.64 -12.84 5.34 -11.49 -0.06 -12.90 16 10 C 0.33 7.89 7.40 -154.70 -1.15 6.74 16 11 C -0.23 -5.77 8.61 -38.48 -0.33 -6.10 16 12 C 0.14 3.64 5.60 -106.55 -0.60 3.04 16 13 C -0.45 -11.35 9.14 -37.65 -0.34 -11.70 16 14 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 15 C 0.07 1.76 5.31 -17.34 -0.09 1.67 16 16 N -0.79 -19.24 10.70 55.55 0.59 -18.64 16 17 Si 0.92 17.64 29.57 -169.99 -5.03 12.61 16 18 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 21 C -0.28 -6.64 9.90 -38.71 -0.38 -7.03 16 22 C 0.12 2.78 11.15 -17.68 -0.20 2.58 16 23 N -0.56 -13.91 7.89 -12.52 -0.10 -14.00 16 24 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 25 H 0.10 0.86 7.84 -52.48 -0.41 0.45 16 26 H 0.12 1.14 8.04 -52.48 -0.42 0.71 16 27 H 0.11 1.37 7.52 -51.92 -0.39 0.98 16 28 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.42 7.24 8.19 -40.82 -0.33 6.90 16 30 H 0.14 3.36 6.11 -52.49 -0.32 3.04 16 31 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 32 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 33 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 302.70 15.07 4.56 4.56 Total: -1.00 -29.08 302.70 -6.26 -35.34 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -3.12 Total: 10.60 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -3.27 Total: -2.44 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.43 Total: -45.55 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.07 Total: -5.48 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.08 -6.26 -35.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815821769.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.617 kcal (2) G-P(sol) polarization free energy of solvation -29.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds