Wall clock time and date at job start Tue Mar 31 2020 05:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40079 * 126.03162 * 2 1 4 4 C 1.30839 * 108.23611 * 179.97438 * 3 2 1 5 5 C 1.39869 * 108.21595 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.04678 * 179.97438 * 5 4 3 7 7 N 1.46893 * 109.47529 * 254.65723 * 6 5 4 8 8 C 1.46902 * 110.99938 * 75.87077 * 7 6 5 9 9 C 1.50702 * 109.46961 * 190.00538 * 8 7 6 10 10 H 1.07998 * 120.00366 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99887 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00033 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99936 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47335 * 59.99203 * 13 11 9 15 15 H 1.48497 * 109.46846 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46878 * 299.99290 * 13 11 9 17 17 C 1.46897 * 111.00340 * 199.82511 * 7 6 5 18 18 C 1.53011 * 109.47052 * 73.96171 * 17 7 6 19 19 C 1.47194 * 109.46792 * 174.80815 * 18 17 7 20 20 N 8.36264 * 126.85546 * 186.57362 * 2 1 3 21 21 C 1.34982 * 126.03623 * 180.26388 * 2 1 3 22 22 Cl 1.73591 * 126.14323 * 359.97438 * 21 2 1 23 23 H 1.08999 * 109.47604 * 89.97697 * 1 2 3 24 24 H 1.09007 * 109.47000 * 209.98119 * 1 2 3 25 25 H 1.09001 * 109.47335 * 329.97656 * 1 2 3 26 26 H 1.08001 * 125.89159 * 180.02562 * 4 3 2 27 27 H 1.09000 * 109.46861 * 134.65604 * 6 5 4 28 28 H 1.09008 * 109.47099 * 14.65997 * 6 5 4 29 29 H 1.09003 * 109.46944 * 309.99675 * 8 7 6 30 30 H 1.08992 * 109.47450 * 70.00227 * 8 7 6 31 31 H 0.96994 * 119.99907 * 180.02562 * 12 11 9 32 32 H 1.08999 * 109.47752 * 193.96261 * 17 7 6 33 33 H 1.08999 * 109.47232 * 313.96477 * 17 7 6 34 34 H 1.08993 * 109.46786 * 294.80539 * 18 17 7 35 35 H 1.08990 * 109.46686 * 54.80675 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1328 0.0000 4 6 3.5348 0.7329 0.0006 5 6 3.5450 -0.6657 0.0015 6 6 4.7700 -1.5435 0.0019 7 7 4.9543 -2.1276 -1.3333 8 6 5.4936 -1.1348 -2.2723 9 6 5.4393 -1.6873 -3.6734 10 1 5.0441 -2.6769 -3.8487 11 6 5.8951 -0.9295 -4.7313 12 7 6.3768 0.2754 -4.5177 13 14 5.8284 -1.6145 -6.4679 14 1 4.4200 -1.9201 -6.8258 15 1 6.3735 -0.6110 -7.4170 16 1 6.6385 -2.8570 -6.5413 17 6 5.8141 -3.3171 -1.2735 18 6 5.0316 -4.4820 -0.6638 19 6 5.8498 -5.7044 -0.7179 20 7 6.4809 -6.6474 -0.7660 21 6 2.2591 -1.0915 -0.0050 22 17 1.7278 -2.7441 -0.0120 23 1 -0.3634 0.0004 -1.0276 24 1 -0.3633 -0.8902 0.5136 25 1 -0.3634 0.8898 0.5142 26 1 4.4050 1.3725 0.0011 27 1 4.6447 -2.3418 0.7335 28 1 5.6445 -0.9468 0.2614 29 1 4.8989 -0.2229 -2.2181 30 1 6.5274 -0.9106 -2.0099 31 1 6.6971 0.8086 -5.2620 32 1 6.1366 -3.5834 -2.2801 33 1 6.6872 -3.1037 -0.6569 34 1 4.7888 -4.2529 0.3738 35 1 4.1112 -4.6356 -1.2270 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816560415.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:30 Heat of formation + Delta-G solvation = 104.814386 kcal Electronic energy + Delta-G solvation = -19699.146323 eV Core-core repulsion = 16567.359933 eV Total energy + Delta-G solvation = -3131.786390 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.02361 -37.43785 -36.60381 -36.05188 -33.31515 -32.66200 -31.25713 -29.89474 -27.68738 -26.44920 -24.37843 -23.02977 -21.05361 -20.72609 -19.60125 -17.24153 -16.98990 -16.35449 -15.59206 -15.09061 -14.68308 -14.57084 -14.42245 -13.83923 -13.48693 -13.26207 -13.07252 -12.74047 -12.50188 -12.33417 -12.01740 -11.96104 -11.78719 -11.73192 -11.45674 -11.08198 -10.98435 -10.74311 -10.58469 -10.36366 -10.22568 -9.86331 -9.21875 -9.07607 -8.42920 -8.12918 -7.33130 -6.02271 -4.02934 1.68521 1.92718 2.85501 2.92859 3.01902 3.03924 3.33925 3.38392 3.41161 4.24690 4.44371 4.56255 5.07807 5.12080 5.22056 5.33396 5.37224 5.39914 5.47542 5.59675 5.69353 5.83464 5.91286 6.06566 6.23913 6.36952 6.58673 6.76297 6.89179 7.27123 7.31995 7.75998 7.78122 7.82329 8.07255 8.15665 8.51366 9.03921 9.61135 11.08327 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.011011 B = 0.007081 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.324002 B = 3953.563461 C = 5567.398003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.376 5.376 3 N -0.283 5.283 4 C 0.070 3.930 5 C -0.186 4.186 6 C 0.124 3.876 7 N -0.528 5.528 8 C 0.198 3.802 9 C -0.509 4.509 10 H 0.063 0.937 11 C 0.058 3.942 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.277 1.277 17 C 0.066 3.934 18 C -0.028 4.028 19 C 0.219 3.781 20 N -0.457 5.457 21 C 0.141 3.859 22 Cl -0.007 7.007 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.188 0.812 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.036 0.964 30 H -0.008 1.008 31 H 0.261 0.739 32 H 0.096 0.904 33 H 0.031 0.969 34 H 0.099 0.901 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 -1.678 11.909 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.161 5.161 3 N -0.105 5.105 4 C -0.115 4.115 5 C -0.199 4.199 6 C -0.005 4.005 7 N -0.252 5.252 8 C 0.073 3.927 9 C -0.547 4.547 10 H 0.081 0.919 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.064 4.064 18 C -0.068 4.068 19 C -0.098 4.098 20 N -0.135 5.135 21 C -0.012 4.012 22 Cl 0.021 6.979 23 H 0.095 0.905 24 H 0.103 0.897 25 H 0.108 0.892 26 H 0.205 0.795 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.010 0.990 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.049 0.951 34 H 0.117 0.883 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.646 -2.218 11.562 15.872 hybrid contribution 0.855 -0.408 -0.889 1.298 sum -9.791 -2.626 10.673 14.720 Atomic orbital electron populations 1.21840 0.74369 1.04240 1.03658 1.48460 1.06573 1.02588 1.58487 1.77476 1.01824 1.05812 1.25351 1.23744 0.95187 0.94241 0.98376 1.19630 0.92856 0.93799 1.13600 1.20368 0.92395 0.95355 0.92413 1.62052 1.49176 1.07599 1.06376 1.19716 0.92959 0.90238 0.89798 1.21119 1.40513 1.02000 0.91082 0.91905 1.24940 0.95469 0.94898 0.99053 1.69931 1.42174 1.09780 1.31695 0.86650 0.78375 0.78603 0.84321 1.20264 1.21429 1.20306 1.21871 0.92877 0.89501 1.02104 1.19451 0.97370 0.86036 1.03992 1.29384 0.93539 0.94449 0.92460 1.81150 1.10245 1.12460 1.09640 1.21256 0.91002 0.82533 1.06448 1.98371 1.90416 1.12169 1.96960 0.90538 0.89700 0.89157 0.79470 0.91205 0.93948 0.94555 0.99004 0.92926 0.88613 0.95054 0.88282 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.97 11.31 59.85 0.68 1.65 16 2 N -0.38 -5.39 4.01 -64.91 -0.26 -5.65 16 3 N -0.28 -4.59 12.57 30.62 0.39 -4.21 16 4 C 0.07 1.12 11.58 -17.36 -0.20 0.92 16 5 C -0.19 -2.93 4.95 -105.00 -0.52 -3.45 16 6 C 0.12 1.87 5.10 -4.98 -0.03 1.84 16 7 N -0.53 -9.54 4.36 -237.51 -1.03 -10.57 16 8 C 0.20 4.63 4.55 -4.97 -0.02 4.61 16 9 C -0.51 -13.35 8.26 -34.44 -0.28 -13.64 16 10 H 0.06 1.62 7.28 -52.49 -0.38 1.24 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 13 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.07 1.07 4.75 -3.82 -0.02 1.05 16 18 C -0.03 -0.35 5.72 -29.52 -0.17 -0.52 16 19 C 0.22 3.17 15.43 -20.77 -0.32 2.85 16 20 N -0.46 -7.75 18.54 42.14 0.78 -6.97 16 21 C 0.14 2.07 7.45 -17.16 -0.13 1.95 16 22 Cl -0.01 -0.09 28.54 -51.86 -1.48 -1.57 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.08 0.64 7.81 -51.93 -0.41 0.24 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.19 2.62 8.06 -52.49 -0.42 2.19 16 27 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 28 H 0.04 0.64 7.99 -51.92 -0.41 0.22 16 29 H 0.04 0.93 7.12 -51.93 -0.37 0.56 16 30 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.10 1.80 6.58 -51.93 -0.34 1.46 16 33 H 0.03 0.48 8.02 -51.93 -0.42 0.07 16 34 H 0.10 1.00 6.80 -51.93 -0.35 0.65 16 35 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 323.67 15.07 4.88 4.88 Total: -1.00 -31.48 323.67 -6.39 -37.87 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -4.27 Total: -3.78 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.11 Total: -1.25 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.61 Total: -52.39 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.48 Total: -1.57 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.48 -6.39 -37.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816560415.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.683 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds