Wall clock time and date at job start Tue Mar 31 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50702 * 119.99516 * 2 1 4 4 N 1.46498 * 109.46884 * 125.00452 * 3 2 1 5 5 C 1.46495 * 119.99941 * 269.99484 * 4 3 2 6 6 C 1.50706 * 109.47356 * 270.00057 * 5 4 3 7 7 H 1.08006 * 119.99677 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00137 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99962 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99981 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47177 * 59.99659 * 10 8 6 12 12 H 1.48496 * 109.47094 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46948 * 299.99744 * 10 8 6 14 14 C 1.34779 * 120.00183 * 89.99955 * 4 3 2 15 15 O 1.21547 * 119.99995 * 180.02562 * 14 4 3 16 16 C 1.47856 * 119.99744 * 359.97438 * 14 4 3 17 17 C 1.40123 * 120.95761 * 270.00205 * 16 14 4 18 18 F 1.35099 * 120.52376 * 0.25665 * 17 16 14 19 19 C 1.38435 * 118.95461 * 179.97438 * 17 16 14 20 20 N 1.31765 * 120.93115 * 0.02562 * 19 17 16 21 21 C 1.31773 * 122.14154 * 359.97438 * 20 19 17 22 22 C 1.38431 * 120.92720 * 0.02952 * 21 20 19 23 23 F 1.35103 * 120.51240 * 179.97438 * 22 21 20 24 24 H 1.07994 * 119.99731 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.99525 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.99910 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47732 * 5.00110 * 3 2 1 28 28 H 1.09003 * 109.47067 * 244.99907 * 3 2 1 29 29 H 1.08997 * 109.47225 * 29.99852 * 5 4 3 30 30 H 1.09004 * 109.47011 * 150.00227 * 5 4 3 31 31 H 0.97004 * 119.99767 * 180.02562 * 9 8 6 32 32 H 1.07998 * 119.53277 * 179.97438 * 19 17 16 33 33 H 1.07996 * 119.53031 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5589 1.8650 2.4248 6 6 2.8443 3.3437 2.4804 7 1 3.3033 3.8372 1.6364 8 6 2.5195 4.0666 3.6086 9 7 1.9601 3.4657 4.6360 10 14 2.8726 5.8996 3.6772 11 1 2.1358 6.5868 2.5863 12 1 2.4319 6.4399 4.9883 13 1 4.3303 6.1294 3.5112 14 6 4.2498 0.8663 0.9823 15 8 5.0214 0.8881 1.9211 16 6 4.6885 0.3279 -0.3230 17 6 4.5350 -1.0304 -0.6308 18 9 3.9760 -1.8772 0.2612 19 6 4.9598 -1.4900 -1.8656 20 7 5.5015 -0.6703 -2.7436 21 6 5.6649 0.6137 -2.4962 22 6 5.2697 1.1613 -1.2878 23 9 5.4417 2.4787 -1.0428 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5399 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1317 0.0896 28 1 2.6213 1.4027 -0.9314 29 1 1.4889 1.6967 2.5459 30 1 3.0991 1.3603 3.2259 31 1 1.7312 3.9744 5.4297 32 1 4.8464 -2.5352 -2.1125 33 1 6.1135 1.2475 -3.2468 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823090494.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:03 Heat of formation + Delta-G solvation = -58.158506 kcal Electronic energy + Delta-G solvation = -22312.360317 eV Core-core repulsion = 18589.417460 eV Total energy + Delta-G solvation = -3722.942856 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.25704 -49.15212 -40.35519 -38.90227 -35.86943 -33.34736 -32.73148 -32.02829 -30.97373 -27.86368 -25.93430 -24.92547 -23.74658 -22.75532 -20.21364 -19.44701 -18.28544 -18.23576 -17.31779 -16.74679 -16.42653 -16.03887 -15.73688 -15.54176 -15.49414 -14.75625 -14.43144 -14.25185 -13.91428 -13.85760 -13.38764 -13.10884 -12.83053 -12.40031 -12.08109 -11.82178 -11.39619 -11.14253 -10.96964 -10.67113 -10.44247 -10.25771 -9.94522 -9.74196 -9.33380 -9.27052 -9.18194 -8.48458 -7.92009 -6.10021 -4.15523 0.45239 0.46482 2.35093 2.85573 3.09805 3.29719 3.34102 3.36850 3.40256 3.58048 3.80102 4.04328 4.37185 4.48530 4.50500 4.74630 5.08677 5.23914 5.26096 5.28291 5.33979 5.47090 5.49339 5.91618 6.07406 6.18548 6.71539 6.78248 6.91730 7.27978 7.31337 7.36500 7.84791 8.09582 8.13825 8.61317 8.89097 9.49575 10.98269 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.006134 C = 0.005376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.732387 B = 4563.524502 C = 5206.641783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.175 4.175 3 C 0.135 3.865 4 N -0.574 5.574 5 C 0.247 3.753 6 C -0.532 4.532 7 H 0.059 0.941 8 C 0.064 3.936 9 N -0.893 5.893 10 Si 0.900 3.100 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.551 3.449 15 O -0.512 6.512 16 C -0.136 4.136 17 C 0.107 3.893 18 F -0.111 7.111 19 C 0.063 3.937 20 N -0.425 5.425 21 C 0.064 3.936 22 C 0.109 3.891 23 F -0.106 7.106 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.265 0.735 32 H 0.180 0.820 33 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.347 -8.482 -15.310 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.194 4.194 3 C 0.011 3.989 4 N -0.303 5.303 5 C 0.129 3.871 6 C -0.570 4.570 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.727 3.273 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.334 3.666 15 O -0.388 6.388 16 C -0.149 4.149 17 C 0.085 3.915 18 F -0.089 7.089 19 C -0.095 4.095 20 N -0.132 5.132 21 C -0.095 4.095 22 C 0.087 3.913 23 F -0.084 7.084 24 H 0.115 0.885 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.197 0.803 33 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.916 -8.710 -15.319 17.726 hybrid contribution -0.218 1.399 1.168 1.836 sum 1.698 -7.311 -14.150 16.018 Atomic orbital electron populations 1.23836 0.95641 1.01957 0.99714 1.23423 0.96612 0.98762 1.00640 1.20633 0.93087 0.96037 0.89132 1.48237 1.09404 1.58467 1.14224 1.19420 0.95796 0.94031 0.77840 1.21363 1.41173 0.92980 1.01531 0.92279 1.24919 0.94861 0.98915 0.95196 1.69924 1.41643 1.36396 1.05173 0.86531 0.78939 0.84617 0.77223 1.20153 1.21086 1.20074 1.17591 0.83521 0.79646 0.85816 1.90830 1.52591 1.55652 1.39699 1.21039 1.02497 0.93614 0.97796 1.18629 0.97412 0.86341 0.89124 1.91588 1.81804 1.68862 1.66644 1.22929 0.97267 1.01369 0.87960 1.67613 1.10820 1.03222 1.31571 1.22960 0.99649 0.92209 0.94687 1.18679 0.99171 0.79339 0.94148 1.91642 1.92430 1.30028 1.94346 0.88497 0.88115 0.87710 0.88629 0.91502 0.94288 0.93563 0.92533 0.80320 0.80239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 14.32 29.01 0.42 -1.84 16 2 C -0.18 -2.59 9.85 -36.03 -0.35 -2.94 16 3 C 0.13 2.28 5.67 -5.19 -0.03 2.25 16 4 N -0.57 -12.42 2.44 -177.55 -0.43 -12.85 16 5 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 6 C -0.53 -15.02 9.39 -34.44 -0.32 -15.35 16 7 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 10 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.55 12.01 6.59 -12.32 -0.08 11.93 16 15 O -0.51 -13.42 16.68 5.32 0.09 -13.33 16 16 C -0.14 -2.27 3.95 -104.55 -0.41 -2.68 16 17 C 0.11 1.48 6.98 -38.80 -0.27 1.21 16 18 F -0.11 -1.62 15.67 2.25 0.04 -1.59 16 19 C 0.06 0.68 11.16 -17.51 -0.20 0.48 16 20 N -0.43 -4.70 10.33 -13.18 -0.14 -4.84 16 21 C 0.06 0.70 11.16 -17.51 -0.20 0.50 16 22 C 0.11 1.58 6.92 -38.81 -0.27 1.31 16 23 F -0.11 -1.74 16.92 2.25 0.04 -1.70 16 24 H 0.10 1.07 8.06 -52.49 -0.42 0.65 16 25 H 0.10 1.26 7.84 -52.49 -0.41 0.85 16 26 H 0.10 1.52 6.37 -52.49 -0.33 1.19 16 27 H 0.10 1.63 7.72 -51.93 -0.40 1.23 16 28 H 0.07 1.01 6.56 -51.93 -0.34 0.66 16 29 H 0.04 1.03 8.07 -51.93 -0.42 0.61 16 30 H 0.05 1.36 7.42 -51.93 -0.39 0.98 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.18 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -32.97 307.07 -5.01 -37.99 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -3.11 Total: -2.49 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.84 Total: 3.03 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.17 Total: -43.30 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.07 Total: -3.29 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.97 -5.01 -37.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823090494.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.173 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds