Wall clock time and date at job start Tue Mar 31 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70448 * 124.59533 * 2 1 4 4 C 1.75493 * 92.45463 * 179.73425 * 3 2 1 5 5 C 1.32738 * 110.60052 * 359.97438 * 4 3 2 6 6 C 1.36098 * 124.59739 * 179.69661 * 2 1 3 7 7 C 1.47037 * 123.47604 * 0.26470 * 6 2 1 8 8 O 1.21561 * 119.99673 * 0.02562 * 7 6 2 9 9 O 1.34792 * 120.00057 * 180.02562 * 7 6 2 10 10 C 1.45206 * 116.99829 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46651 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47333 * 299.99758 * 11 10 9 13 13 C 1.53007 * 109.47062 * 60.00213 * 11 10 9 14 14 C 1.53000 * 109.46861 * 179.97438 * 11 10 9 15 15 C 1.50699 * 109.47383 * 179.97438 * 14 11 10 16 16 H 1.07998 * 119.99842 * 0.02562 * 15 14 11 17 17 C 1.37874 * 120.00142 * 180.02562 * 15 14 11 18 18 N 1.31517 * 119.99922 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00143 * 180.02562 * 17 15 14 20 20 H 1.48511 * 109.47137 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47319 * 119.99733 * 19 17 15 22 22 H 1.48502 * 109.47465 * 240.00192 * 19 17 15 23 23 H 1.08994 * 109.47426 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47213 * 120.02716 * 1 2 3 25 25 H 1.09006 * 109.47455 * 240.02419 * 1 2 3 26 26 H 1.08004 * 124.70299 * 180.02562 * 4 3 2 27 27 H 1.08003 * 123.45529 * 180.02562 * 5 4 3 28 28 H 1.08998 * 109.46934 * 299.99294 * 10 9 7 29 29 H 1.08994 * 109.47050 * 60.00305 * 10 9 7 30 30 H 1.09000 * 109.47200 * 60.00709 * 12 11 10 31 31 H 1.08998 * 109.46712 * 180.02562 * 12 11 10 32 32 H 1.09002 * 109.47146 * 300.00218 * 12 11 10 33 33 H 1.08999 * 109.46828 * 59.99656 * 13 11 10 34 34 H 1.08998 * 109.46733 * 179.97438 * 13 11 10 35 35 H 1.09001 * 109.46608 * 299.99405 * 13 11 10 36 36 H 1.08999 * 109.47617 * 300.00704 * 14 11 10 37 37 H 1.09002 * 109.46936 * 60.00199 * 14 11 10 38 38 H 0.96998 * 119.99909 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4748 1.4031 0.0000 4 6 3.9607 0.4695 0.0081 5 6 3.6952 -0.8311 0.0111 6 6 2.2798 -1.1203 0.0059 7 6 1.7307 -2.4843 0.0075 8 8 0.5272 -2.6550 0.0029 9 8 2.5619 -3.5454 0.0140 10 6 1.9499 -4.8622 0.0146 11 6 3.0432 -5.9326 0.0217 12 6 3.9173 -5.7771 -1.2243 13 6 3.9070 -5.7711 1.2742 14 6 2.3984 -7.3201 0.0229 15 6 3.4751 -8.3745 0.0293 16 1 4.5152 -8.0840 0.0326 17 6 3.1322 -9.7099 0.0309 18 7 1.8655 -10.0636 0.0264 19 14 4.4668 -11.0168 0.0395 20 1 5.8001 -10.3628 0.0430 21 1 4.3257 -11.8605 1.2534 22 1 4.3358 -11.8661 -1.1716 23 1 -0.3634 1.0276 -0.0005 24 1 -0.3633 -0.5142 -0.8897 25 1 -0.3634 -0.5135 0.8902 26 1 4.9537 0.8942 0.0112 27 1 4.4589 -1.5947 0.0165 28 1 1.3269 -4.9728 0.9021 29 1 1.3350 -4.9774 -0.8779 30 1 4.3768 -4.7887 -1.2247 31 1 4.6959 -6.5399 -1.2194 32 1 3.3019 -5.8922 -2.1166 33 1 3.2841 -5.8819 2.1618 34 1 4.6855 -6.5339 1.2795 35 1 4.3663 -4.7826 1.2737 36 1 1.7757 -7.4307 0.9107 37 1 1.7827 -7.4354 -0.8692 38 1 1.6243 -11.0031 0.0279 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835386016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:12 Heat of formation + Delta-G solvation = -80.347285 kcal Electronic energy + Delta-G solvation = -19788.373514 eV Core-core repulsion = 16721.849210 eV Total energy + Delta-G solvation = -3066.524304 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.24882 -37.84882 -36.71751 -35.32799 -32.33602 -32.15471 -28.15331 -27.08434 -26.39187 -26.19154 -24.09473 -22.81779 -21.67168 -19.55166 -18.20955 -17.53179 -16.54652 -16.36254 -16.08431 -16.04945 -14.53603 -14.30594 -14.28650 -13.63094 -13.43663 -13.42050 -13.08229 -12.81760 -12.37401 -12.28343 -12.22832 -12.05552 -11.84437 -11.28850 -11.24381 -10.97337 -10.80789 -10.59372 -10.42939 -10.24885 -10.24773 -10.13768 -9.71843 -9.20591 -9.03208 -8.92525 -8.71907 -8.36519 -6.00510 -4.01484 0.52478 1.21219 1.61694 1.76796 3.10064 3.14553 3.30864 3.38857 3.42124 4.44190 4.45532 4.73380 4.94470 5.15873 5.35340 5.42409 5.44860 5.52809 5.54272 5.70645 5.80805 5.84210 5.92336 6.06112 6.10910 6.21626 6.39963 6.53166 6.65811 6.72455 6.83954 7.12509 7.13184 7.15307 7.61970 7.73748 7.97831 8.02260 8.40473 9.03171 9.61640 11.11236 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.040263 B = 0.003316 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.267555 B = 8442.008121 C = 8935.600044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.138 4.138 3 S 0.181 5.819 4 C -0.244 4.244 5 C -0.082 4.082 6 C -0.158 4.158 7 C 0.522 3.478 8 O -0.511 6.511 9 O -0.344 6.344 10 C 0.080 3.920 11 C -0.058 4.058 12 C -0.126 4.126 13 C -0.126 4.126 14 C 0.034 3.966 15 C -0.508 4.508 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.170 0.830 27 H 0.158 0.842 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.079 23.092 -0.039 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.258 4.258 3 S 0.446 5.554 4 C -0.379 4.379 5 C -0.110 4.110 6 C -0.173 4.173 7 C 0.365 3.635 8 O -0.402 6.402 9 O -0.260 6.260 10 C 0.007 3.993 11 C -0.058 4.058 12 C -0.183 4.183 13 C -0.183 4.183 14 C -0.003 4.003 15 C -0.547 4.547 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.084 0.916 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.188 0.812 27 H 0.176 0.824 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.346 24.383 -0.046 24.421 hybrid contribution 0.837 -2.541 0.008 2.675 sum 2.183 21.843 -0.038 21.952 Atomic orbital electron populations 1.20474 0.86476 1.02223 1.04946 1.24610 1.01947 0.96993 1.02261 1.83009 0.95152 1.06885 1.70321 1.25408 1.02184 0.97129 1.13148 1.21346 0.94661 0.96364 0.98668 1.19431 0.93283 0.90820 1.13744 1.20327 0.84728 0.85251 0.73196 1.90823 1.15991 1.86977 1.46430 1.86557 1.40336 1.15935 1.83180 1.23509 0.96767 0.77078 1.01915 1.20813 0.94176 0.94788 0.96070 1.21711 0.99926 1.00088 0.96552 1.21714 0.99972 1.00081 0.96515 1.19130 0.96002 0.87657 0.97467 1.21194 0.92947 0.90426 1.50098 0.92013 1.25017 0.95241 0.98775 0.95523 1.69978 1.15835 1.16683 1.51011 0.86563 0.82194 0.81887 0.77526 1.19711 1.21108 1.21114 0.91554 0.89324 0.89324 0.81235 0.82420 0.91610 0.91616 0.94218 0.91583 0.93781 0.93780 0.91583 0.94220 0.96341 0.96344 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 8.77 36.01 0.32 -0.53 16 2 C -0.14 -1.57 6.35 -35.08 -0.22 -1.79 16 3 S 0.18 1.51 22.95 -107.50 -2.47 -0.96 16 4 C -0.24 -2.14 11.12 28.85 0.32 -1.82 16 5 C -0.08 -0.92 10.13 -39.01 -0.40 -1.31 16 6 C -0.16 -2.11 5.98 -104.65 -0.63 -2.74 16 7 C 0.52 8.58 7.92 34.30 0.27 8.86 16 8 O -0.51 -9.32 14.44 -19.31 -0.28 -9.60 16 9 O -0.34 -5.93 8.61 -40.74 -0.35 -6.28 16 10 C 0.08 1.53 4.33 37.16 0.16 1.69 16 11 C -0.06 -1.19 0.61 -154.50 -0.09 -1.28 16 12 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 13 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 14 C 0.03 0.87 4.04 -27.88 -0.11 0.75 16 15 C -0.51 -13.73 7.65 -34.44 -0.26 -14.00 16 16 H 0.06 1.61 5.68 -52.49 -0.30 1.32 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 19 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 24 H 0.09 0.99 7.78 -51.93 -0.40 0.58 16 25 H 0.09 0.99 7.78 -51.93 -0.40 0.58 16 26 H 0.17 1.03 8.06 -52.48 -0.42 0.60 16 27 H 0.16 1.67 8.06 -52.48 -0.42 1.24 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 31 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 35 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 329.88 15.07 4.97 4.97 Total: -1.00 -30.51 329.88 -8.08 -38.59 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.53 Total: -2.28 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -0.14 Total: -14.92 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.74 Total: -25.86 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.63 Total: -15.87 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.47 Total: -0.96 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.51 -8.08 -38.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835386016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.756 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds