Wall clock time and date at job start Tue Mar 31 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33860 * 122.44276 * 2 1 4 4 S 1.70620 * 110.96129 * 179.75684 * 3 2 1 5 5 C 1.75831 * 91.56271 * 0.24476 * 4 3 2 6 6 C 1.46397 * 125.45992 * 180.02562 * 5 4 3 7 7 O 1.21629 * 119.99970 * 179.97438 * 6 5 4 8 8 O 1.34898 * 120.00085 * 359.97052 * 6 5 4 9 9 C 1.45205 * 116.99979 * 180.02562 * 8 6 5 10 10 C 1.52991 * 109.46981 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47351 * 299.99994 * 10 9 8 12 12 C 1.53005 * 109.47112 * 60.00090 * 10 9 8 13 13 C 1.53001 * 109.47229 * 180.02562 * 10 9 8 14 14 C 1.50700 * 109.47479 * 180.02562 * 13 10 9 15 15 H 1.08000 * 119.99666 * 359.97438 * 14 13 10 16 16 C 1.37874 * 119.99891 * 179.97438 * 14 13 10 17 17 N 1.31510 * 120.00470 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99837 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47189 * 59.99757 * 18 16 14 20 20 H 1.48500 * 109.46866 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46892 * 300.00136 * 18 16 14 22 22 C 1.36746 * 109.07512 * 359.97438 * 5 4 3 23 23 H 1.09003 * 109.47436 * 90.02333 * 1 2 3 24 24 H 1.09003 * 109.47161 * 210.02473 * 1 2 3 25 25 H 1.09003 * 109.47328 * 330.02263 * 1 2 3 26 26 H 1.08002 * 124.52208 * 0.02748 * 3 2 1 27 27 H 1.09003 * 109.47064 * 300.00425 * 9 8 6 28 28 H 1.09000 * 109.46638 * 60.00145 * 9 8 6 29 29 H 1.09001 * 109.46621 * 60.00328 * 11 10 9 30 30 H 1.09000 * 109.47123 * 179.97438 * 11 10 9 31 31 H 1.08993 * 109.46972 * 299.99760 * 11 10 9 32 32 H 1.08999 * 109.47155 * 60.00062 * 12 10 9 33 33 H 1.09001 * 109.47106 * 179.97438 * 12 10 9 34 34 H 1.08991 * 109.47030 * 299.99980 * 12 10 9 35 35 H 1.09003 * 109.46776 * 300.00380 * 13 10 9 36 36 H 1.08997 * 109.47275 * 59.99524 * 13 10 9 37 37 H 0.96998 * 120.00563 * 179.97438 * 17 16 14 38 38 H 1.08010 * 123.35458 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2250 1.1297 0.0000 4 16 3.8971 0.7901 0.0068 5 6 3.5942 -0.9420 0.0021 6 6 4.6225 -1.9839 0.0052 7 8 4.3000 -3.1567 0.0020 8 8 5.9278 -1.6434 0.0116 9 6 6.8923 -2.7289 0.0138 10 6 8.3092 -2.1521 0.0217 11 6 8.5156 -1.2890 -1.2246 12 6 8.5038 -1.2945 1.2738 13 6 9.3255 -3.2958 0.0234 14 6 10.7213 -2.7277 0.0319 15 1 10.8688 -1.6578 0.0353 16 6 11.8099 -3.5737 0.0353 17 7 11.6304 -4.8765 0.0316 18 14 13.5401 -2.8694 0.0451 19 1 13.7288 -2.0370 1.2602 20 1 14.5264 -3.9796 0.0468 21 1 13.7404 -2.0318 -1.1647 22 6 2.2442 -1.1596 -0.0037 23 1 -0.3634 -0.0004 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5135 26 1 1.8024 2.1236 0.0004 27 1 6.7455 -3.3436 0.9019 28 1 6.7533 -3.3401 -0.8780 29 1 7.7916 -0.4742 -1.2262 30 1 9.5250 -0.8777 -1.2187 31 1 8.3771 -1.8999 -2.1166 32 1 8.3568 -1.9094 2.1618 33 1 9.5134 -0.8839 1.2798 34 1 7.7798 -0.4798 1.2722 35 1 9.1786 -3.9111 0.9111 36 1 9.1868 -3.9064 -0.8688 37 1 12.3962 -5.4717 0.0336 38 1 1.8015 -2.1448 -0.0070 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835387582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:59 Heat of formation + Delta-G solvation = -78.547514 kcal Electronic energy + Delta-G solvation = -19502.547731 eV Core-core repulsion = 16436.101471 eV Total energy + Delta-G solvation = -3066.446260 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.19075 -38.50483 -37.05773 -35.34456 -32.34746 -31.37775 -28.22910 -27.35608 -26.58388 -26.40679 -24.76949 -22.85646 -20.91956 -19.26346 -18.59843 -18.06929 -16.64390 -16.20364 -16.14671 -16.01320 -14.54932 -14.47923 -14.32800 -13.66622 -13.50316 -13.43977 -13.09044 -12.54202 -12.49689 -12.36055 -12.20994 -12.14099 -12.04810 -11.26649 -11.06029 -10.95212 -10.85669 -10.59423 -10.57573 -10.32383 -10.30364 -10.21843 -9.74025 -9.22560 -9.11912 -8.95651 -8.63394 -8.36280 -6.00530 -4.01820 0.23475 1.28932 1.73956 2.05277 2.83126 2.92668 3.32993 3.37932 3.39833 4.44890 4.65719 4.73805 4.96989 5.02164 5.26294 5.30957 5.34981 5.48960 5.51160 5.56758 5.63790 5.81698 5.98472 6.07320 6.12476 6.19162 6.37573 6.51597 6.60076 6.71178 6.77498 7.11261 7.11559 7.13456 7.60777 7.72674 7.87114 7.97898 8.39619 9.02250 9.61210 11.11118 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.043497 B = 0.003276 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.570918 B = 8546.025105 C = 8987.921640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.123 4.123 3 C -0.245 4.245 4 S 0.257 5.743 5 C -0.251 4.251 6 C 0.532 3.468 7 O -0.503 6.503 8 O -0.347 6.347 9 C 0.081 3.919 10 C -0.058 4.058 11 C -0.126 4.126 12 C -0.126 4.126 13 C 0.035 3.965 14 C -0.510 4.510 15 H 0.061 0.939 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.051 4.051 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.169 0.831 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.261 0.739 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.924 12.519 -0.070 23.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.136 4.136 3 C -0.383 4.383 4 S 0.528 5.472 5 C -0.370 4.370 6 C 0.376 3.624 7 O -0.393 6.393 8 O -0.263 6.263 9 C 0.008 3.992 10 C -0.059 4.059 11 C -0.183 4.183 12 C -0.183 4.183 13 C -0.002 4.002 14 C -0.548 4.548 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.084 4.084 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.187 0.813 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.071 0.929 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.516 12.922 -0.061 22.579 hybrid contribution -0.344 -0.807 -0.009 0.877 sum -18.861 12.115 -0.070 22.417 Atomic orbital electron populations 1.20503 0.89348 1.02887 1.02437 1.18710 0.97969 0.91368 1.05541 1.25396 0.99874 1.03429 1.09571 1.83444 1.01581 0.97005 1.65206 1.23696 0.96039 0.97468 1.19792 1.19630 0.82510 0.86906 0.73399 1.90880 1.82983 1.19269 1.46193 1.86574 1.14953 1.41446 1.83324 1.23570 0.86644 0.86854 1.02145 1.20827 0.90250 0.98638 0.96144 1.21720 1.01597 0.98481 0.96538 1.21719 1.01608 0.98510 0.96499 1.19122 0.92060 0.91490 0.97503 1.21110 0.90361 0.92928 1.50436 0.92112 1.25010 0.99162 0.94827 0.95482 1.69950 1.30695 1.02084 1.50776 0.86676 0.84325 0.78524 0.78592 1.20259 1.21387 1.20263 1.20659 0.90544 1.00231 0.96975 0.91154 0.91275 0.91492 0.81348 0.91403 0.91399 0.94233 0.91505 0.93720 0.93726 0.91501 0.94225 0.96313 0.96311 0.92944 0.82832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.13 36.00 0.36 -0.22 16 2 C -0.12 -1.12 5.78 -106.46 -0.62 -1.74 16 3 C -0.24 -2.07 10.67 29.19 0.31 -1.76 16 4 S 0.26 2.68 22.92 -107.50 -2.46 0.21 16 5 C -0.25 -3.34 6.45 -36.84 -0.24 -3.58 16 6 C 0.53 8.84 7.92 34.01 0.27 9.11 16 7 O -0.50 -9.54 16.64 -19.36 -0.32 -9.87 16 8 O -0.35 -5.97 8.74 -41.04 -0.36 -6.33 16 9 C 0.08 1.53 4.33 37.15 0.16 1.69 16 10 C -0.06 -1.19 0.61 -154.51 -0.09 -1.28 16 11 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 12 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 13 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 14 C -0.51 -13.73 7.65 -34.44 -0.26 -14.00 16 15 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 18 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.05 -0.57 9.80 -40.42 -0.40 -0.97 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 25 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 26 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 30 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 34 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 333.38 15.07 5.02 5.02 Total: -1.00 -30.64 333.38 -8.08 -38.72 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -5.57 Total: -3.53 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -0.11 Total: -14.71 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.68 Total: -16.20 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.46 Total: 0.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.64 -8.08 -38.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835387582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.827 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds