Wall clock time and date at job start Tue Mar 31 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47567 * 2 1 4 4 C 1.53007 * 109.46877 * 120.00103 * 2 1 3 5 5 H 1.09005 * 109.46860 * 296.22330 * 4 2 1 6 6 F 1.39895 * 109.47038 * 176.22286 * 4 2 1 7 7 C 1.50694 * 109.47132 * 56.21844 * 4 2 1 8 8 O 1.20829 * 120.00135 * 48.82824 * 7 4 2 9 9 O 1.34265 * 120.00241 * 228.82129 * 7 4 2 10 10 C 1.35922 * 117.00324 * 175.01897 * 9 7 4 11 11 C 1.38822 * 120.01795 * 255.00888 * 10 9 7 12 12 C 1.38195 * 120.08027 * 179.71505 * 11 10 9 13 13 C 1.38155 * 120.12285 * 0.55836 * 12 11 10 14 14 C 1.38897 * 120.03918 * 359.71826 * 13 12 11 15 15 O 1.35749 * 120.04097 * 179.97438 * 14 13 12 16 16 C 1.34826 * 116.99990 * 186.12379 * 15 14 13 17 17 H 1.07994 * 120.00062 * 5.66212 * 16 15 14 18 18 C 1.38658 * 119.99512 * 185.65643 * 16 15 14 19 19 N 1.31554 * 120.00577 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99460 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47613 * 60.00103 * 20 18 16 22 22 H 1.48502 * 109.46878 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47171 * 299.99745 * 20 18 16 24 24 C 1.38571 * 120.02247 * 75.28162 * 10 9 7 25 25 H 1.08995 * 109.47623 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47149 * 300.00740 * 1 2 3 27 27 H 1.09004 * 109.46980 * 59.99875 * 1 2 3 28 28 H 1.09000 * 109.47149 * 239.99260 * 2 1 3 29 29 H 1.09002 * 109.46917 * 184.98877 * 3 2 1 30 30 H 1.09004 * 109.46471 * 304.98704 * 3 2 1 31 31 H 1.08994 * 109.46967 * 64.98624 * 3 2 1 32 32 H 1.08003 * 119.96496 * 359.97438 * 11 10 9 33 33 H 1.07997 * 119.93495 * 180.27297 * 12 11 10 34 34 H 1.07992 * 119.97703 * 179.69876 * 13 12 11 35 35 H 0.96999 * 119.99961 * 179.97438 * 19 18 16 36 36 H 1.07999 * 120.05984 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.7329 -0.1698 2.1380 6 9 3.4362 -0.7971 1.2067 7 6 1.4625 -2.1124 1.2970 8 8 1.5115 -2.8207 0.3193 9 8 0.8938 -2.5649 2.4259 10 6 0.3008 -3.7867 2.3714 11 6 -1.0835 -3.8859 2.3388 12 6 -1.6877 -5.1273 2.2774 13 6 -0.9168 -6.2736 2.2599 14 6 0.4686 -6.1804 2.2982 15 8 1.2261 -7.3067 2.2815 16 6 2.5552 -7.1530 2.4485 17 1 2.9614 -6.1791 2.6782 18 6 3.4002 -8.2454 2.3254 19 7 2.9053 -9.4317 2.0452 20 14 5.2415 -8.0325 2.5575 21 1 5.5123 -7.5218 3.9253 22 1 5.9180 -9.3418 2.3744 23 1 5.7580 -7.0648 1.5564 24 6 1.0774 -4.9342 2.3540 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.1265 1.4437 -0.0894 30 1 1.6056 1.9814 -0.8420 31 1 1.7516 1.9299 0.9312 32 1 -1.6890 -2.9918 2.3572 33 1 -2.7647 -5.2015 2.2477 34 1 -1.3915 -7.2426 2.2169 35 1 3.4966 -10.1957 1.9587 36 1 2.1543 -4.8591 2.3834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841344096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:56 Heat of formation + Delta-G solvation = -134.690122 kcal Electronic energy + Delta-G solvation = -22001.083639 eV Core-core repulsion = 18365.989677 eV Total energy + Delta-G solvation = -3635.093962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.14757 -41.02024 -38.88388 -37.35082 -35.90082 -35.68749 -32.33873 -30.05840 -29.07292 -28.16719 -27.36516 -25.44882 -23.42350 -21.77617 -21.13371 -20.28267 -18.53154 -18.19520 -17.53135 -16.88623 -16.28521 -15.75347 -15.51481 -15.17008 -14.56524 -14.54701 -14.18969 -13.92158 -13.65860 -13.33119 -13.14260 -13.10899 -12.64391 -12.50911 -12.45285 -11.92765 -11.60733 -11.48566 -11.42428 -11.31694 -11.09155 -10.97826 -10.88858 -10.52989 -10.40750 -10.30815 -9.59492 -8.89430 -8.23731 -7.40590 -6.50771 -4.10229 1.63344 2.03778 2.15683 2.75559 3.12312 3.14482 3.16381 3.93668 3.96183 4.33470 4.36751 4.45056 4.62648 4.84130 5.04082 5.10291 5.14395 5.17005 5.31304 5.48685 5.51281 5.54234 5.71691 5.73589 5.90627 5.93132 5.94626 6.09918 6.18116 6.49726 6.77751 6.92856 7.03159 7.07565 7.27871 7.49835 7.91459 7.97281 8.94160 9.59163 10.66407 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.017066 B = 0.005097 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.261848 B = 5492.066945 C = 6832.007721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.146 4.146 4 C 0.117 3.883 5 H 0.116 0.884 6 F -0.181 7.181 7 C 0.432 3.568 8 O -0.460 6.460 9 O -0.289 6.289 10 C 0.115 3.885 11 C -0.211 4.211 12 C -0.065 4.065 13 C -0.185 4.185 14 C 0.163 3.837 15 O -0.168 6.168 16 C -0.394 4.394 17 H 0.090 0.910 18 C 0.043 3.957 19 N -0.858 5.858 20 Si 0.940 3.060 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.268 1.268 24 C -0.228 4.228 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.272 0.728 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 18.638 -1.267 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.134 4.134 3 C -0.203 4.203 4 C 0.080 3.920 5 H 0.134 0.866 6 F -0.162 7.162 7 C 0.272 3.728 8 O -0.343 6.343 9 O -0.204 6.204 10 C 0.075 3.925 11 C -0.231 4.231 12 C -0.083 4.083 13 C -0.204 4.204 14 C 0.109 3.891 15 O -0.071 6.071 16 C -0.470 4.470 17 H 0.108 0.892 18 C -0.162 4.162 19 N -0.492 5.492 20 Si 0.764 3.236 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.194 1.194 24 C -0.248 4.248 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.082 0.918 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.171 17.877 -1.641 18.431 hybrid contribution 1.130 -0.015 0.110 1.136 sum -3.041 17.863 -1.531 18.184 Atomic orbital electron populations 1.21878 0.93198 1.03004 1.03078 1.21681 0.97644 0.97357 0.96728 1.21827 1.01930 0.93842 1.02729 1.21306 0.76770 0.90811 1.03151 0.86603 1.92916 1.28434 1.96896 1.97945 1.24327 0.77054 0.89768 0.81660 1.90758 1.51354 1.56861 1.35283 1.84531 1.65541 1.34040 1.36325 1.18233 0.90922 0.81250 1.02143 1.20475 0.91987 0.98020 1.12572 1.20491 0.98728 0.91063 0.98018 1.20342 0.90925 0.99009 1.10165 1.19135 0.91244 0.86306 0.92464 1.84013 1.19735 1.25995 1.77333 1.21278 0.78914 0.96985 1.49846 0.89222 1.25292 1.00430 0.94314 0.96160 1.70020 1.36241 0.99338 1.43636 0.85787 0.80258 0.78151 0.79370 1.19312 1.20059 1.19351 1.21224 1.00874 0.91508 1.11203 0.92015 0.91712 0.91030 0.88485 0.91695 0.91369 0.91988 0.86672 0.85880 0.85784 0.91777 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.89 37.16 0.33 -1.06 16 2 C -0.12 -1.15 2.58 -90.62 -0.23 -1.38 16 3 C -0.15 -1.06 9.06 37.16 0.34 -0.73 16 4 C 0.12 1.43 3.41 -27.88 -0.10 1.33 16 5 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 6 F -0.18 -2.54 16.79 2.25 0.04 -2.51 16 7 C 0.43 7.29 5.72 36.00 0.21 7.49 16 8 O -0.46 -9.40 15.99 -18.75 -0.30 -9.70 16 9 O -0.29 -5.19 10.03 -23.61 -0.24 -5.42 16 10 C 0.11 2.34 5.18 -39.24 -0.20 2.14 16 11 C -0.21 -3.79 9.99 -39.38 -0.39 -4.18 16 12 C -0.06 -1.14 10.03 -39.63 -0.40 -1.54 16 13 C -0.19 -3.89 9.99 -39.37 -0.39 -4.28 16 14 C 0.16 4.05 6.64 -39.13 -0.26 3.79 16 15 O -0.17 -4.87 9.76 0.06 0.00 -4.87 16 16 C -0.39 -11.32 9.44 30.89 0.29 -11.03 16 17 H 0.09 2.44 5.31 -52.49 -0.28 2.16 16 18 C 0.04 1.21 5.49 -17.52 -0.10 1.11 16 19 N -0.86 -25.30 13.67 55.48 0.76 -24.55 16 20 Si 0.94 21.05 29.55 -169.99 -5.02 16.02 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 C -0.23 -5.38 8.54 -39.25 -0.34 -5.71 16 25 H 0.06 0.71 7.02 -51.93 -0.36 0.34 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 29 H 0.06 0.50 8.03 -51.93 -0.42 0.08 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 33 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.13 3.24 5.72 -52.49 -0.30 2.94 16 LS Contribution 319.38 15.07 4.81 4.81 Total: -1.00 -32.72 319.38 -5.49 -38.21 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.30 Total: 2.05 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -1.24 Total: -14.05 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: 0.76 Total: -24.55 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.54 Total: -19.99 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.72 -5.49 -38.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841344096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.484 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds