Wall clock time and date at job start Tue Mar 31 2020 05:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50702 * 120.00036 * 2 1 4 4 C 1.53002 * 109.46770 * 295.00040 * 3 2 1 5 5 C 1.53005 * 109.46692 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46993 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99974 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00113 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00064 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00091 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47023 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.46985 * 120.00060 * 10 8 6 13 13 H 1.48500 * 109.46909 * 239.99973 * 10 8 6 14 14 N 1.28018 * 119.99894 * 180.02562 * 2 1 3 15 15 N 1.40097 * 120.00178 * 359.97438 * 14 2 1 16 16 C 1.39114 * 120.00078 * 180.02562 * 15 14 2 17 17 C 1.39524 * 120.14394 * 180.02562 * 16 15 14 18 18 C 1.38525 * 117.91366 * 179.97438 * 17 16 15 19 19 C 1.38960 * 118.02726 * 359.97438 * 18 17 16 20 20 Cl 1.73600 * 120.00310 * 180.02562 * 19 18 17 21 21 N 1.31893 * 119.99380 * 0.02562 * 19 18 17 22 22 N 1.28354 * 122.26385 * 0.02562 * 21 19 18 23 23 H 1.08997 * 109.46965 * 269.99482 * 1 2 3 24 24 H 1.08997 * 109.47275 * 29.99967 * 1 2 3 25 25 H 1.09001 * 109.47199 * 150.00231 * 1 2 3 26 26 H 1.08994 * 109.47030 * 54.99803 * 3 2 1 27 27 H 1.08999 * 109.47231 * 175.00555 * 3 2 1 28 28 H 1.08996 * 109.47882 * 299.99802 * 4 3 2 29 29 H 1.09006 * 109.46980 * 60.00635 * 4 3 2 30 30 H 1.08994 * 109.47290 * 299.99874 * 5 4 3 31 31 H 1.08999 * 109.47049 * 60.00674 * 5 4 3 32 32 H 0.96995 * 120.00716 * 179.97438 * 9 8 6 33 33 H 0.96998 * 120.00174 * 0.02562 * 15 14 2 34 34 H 1.08001 * 121.04863 * 359.95801 * 17 16 15 35 35 H 1.07999 * 120.98828 * 179.72465 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9875 2.0515 -1.3074 5 6 2.7520 3.3769 -1.3071 6 6 2.4827 4.1124 -2.5945 7 1 1.8310 3.6783 -3.3384 8 6 3.0681 5.3397 -2.8229 9 7 3.8613 5.8686 -1.9169 10 14 2.7337 6.2517 -4.4184 11 1 1.8143 5.4488 -5.2642 12 1 2.1095 7.5648 -4.1164 13 1 4.0119 6.4663 -5.1432 14 7 2.1471 -1.1087 -0.0005 15 7 1.4466 -2.3220 -0.0005 16 6 2.1422 -3.5267 -0.0005 17 6 1.4476 -4.7368 -0.0010 18 6 2.1864 -5.9086 -0.0016 19 6 3.5722 -5.8067 -0.0021 20 17 4.5482 -7.2425 -0.0034 21 7 4.1461 -4.6192 -0.0015 22 7 3.4669 -3.5300 0.0000 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 1.9317 1.9145 0.8418 27 1 3.3288 1.1079 0.0895 28 1 2.3163 1.4423 -2.1492 29 1 0.9192 2.2488 -1.3969 30 1 2.4228 3.9861 -0.4654 31 1 3.8204 3.1800 -1.2174 32 1 4.2735 6.7318 -2.0776 33 1 0.4766 -2.3220 -0.0005 34 1 0.3678 -4.7593 -0.0008 35 1 1.6997 -6.8727 0.0025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841605059.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:11 Heat of formation + Delta-G solvation = 80.994349 kcal Electronic energy + Delta-G solvation = -18268.553058 eV Core-core repulsion = 15135.733754 eV Total energy + Delta-G solvation = -3132.819304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25046 -38.40043 -37.05925 -35.39819 -33.79859 -33.27339 -31.93940 -30.13547 -28.42773 -27.25868 -25.08643 -24.20573 -23.22634 -20.51841 -19.57626 -18.25323 -17.59109 -17.37801 -16.38110 -16.06706 -15.69948 -14.66441 -14.50457 -14.30823 -13.99642 -13.96577 -13.58487 -13.06203 -12.45417 -12.11187 -11.91451 -11.83135 -11.79743 -11.63576 -11.39271 -10.87229 -10.82473 -10.65303 -10.54031 -10.15402 -10.05762 -9.77490 -9.69141 -9.36213 -9.07335 -8.34455 -8.13039 -5.99346 -4.01671 0.41789 0.58729 1.41266 2.18675 2.27429 3.28463 3.31491 3.39192 3.42742 3.85197 4.08725 4.22655 4.41378 4.46385 4.62220 4.78471 4.95176 5.15489 5.27845 5.36693 5.39142 5.49306 5.80400 5.80655 5.96762 6.14906 6.40217 6.64019 6.68750 6.81363 7.08503 7.68109 7.82040 8.00614 8.02428 8.42520 8.52383 9.05541 9.62443 11.11996 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028299 B = 0.002489 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.188222 B =11245.383302 C =11757.165563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 C -0.065 4.065 4 C -0.102 4.102 5 C 0.020 3.980 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.894 5.894 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.242 5.242 15 N -0.564 5.564 16 C 0.362 3.638 17 C -0.165 4.165 18 C -0.065 4.065 19 C 0.056 3.944 20 Cl -0.018 7.018 21 N -0.187 5.187 22 N -0.243 5.243 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.260 0.740 33 H 0.395 0.605 34 H 0.156 0.844 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.040 -24.237 6.419 26.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.078 4.078 3 C -0.105 4.105 4 C -0.141 4.141 5 C -0.017 4.017 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.046 5.046 15 N -0.288 5.288 16 C 0.121 3.879 17 C -0.199 4.199 18 C -0.094 4.094 19 C -0.119 4.119 20 Cl 0.010 6.990 21 N -0.032 5.032 22 N -0.095 5.095 23 H 0.101 0.899 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.238 0.762 34 H 0.174 0.826 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.541 -23.733 6.460 25.451 hybrid contribution -2.693 -0.225 -0.907 2.850 sum -9.234 -23.957 5.553 26.269 Atomic orbital electron populations 1.21391 0.93293 1.04071 1.03370 1.25503 0.94447 0.94315 0.93499 1.20709 1.00171 0.88462 1.01115 1.21637 1.00619 0.98398 0.93472 1.19115 0.95497 0.89918 0.97141 1.21271 1.28346 1.03294 1.02924 0.92705 1.25020 0.95207 0.97590 0.96662 1.69965 1.31307 1.17940 1.34172 0.86561 0.78067 0.79705 0.83812 1.19807 1.21041 1.21003 1.74735 1.23516 0.90444 1.15915 1.45332 1.06359 1.00666 1.76465 1.19731 0.91606 0.85194 0.91407 1.21748 1.02130 0.90327 1.05686 1.21915 0.92007 1.00166 0.95312 1.23259 0.90482 0.91156 1.06996 1.98402 1.71529 1.32278 1.96835 1.72901 1.30761 0.93783 1.05749 1.73477 1.03668 1.16574 1.15755 0.89932 0.88655 0.92264 0.89637 0.89840 0.93080 0.93033 0.96372 0.96255 0.93036 0.76211 0.82642 0.82233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.46 36.01 0.34 -1.24 16 2 C 0.12 1.59 6.55 -78.91 -0.52 1.07 16 3 C -0.06 -1.03 5.60 -27.88 -0.16 -1.19 16 4 C -0.10 -1.97 5.03 -26.73 -0.13 -2.10 16 5 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 6 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 7 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 10 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.24 -3.67 10.99 35.60 0.39 -3.28 16 15 N -0.56 -6.73 6.26 31.24 0.20 -6.53 16 16 C 0.36 4.46 7.69 -154.70 -1.19 3.27 16 17 C -0.16 -1.32 10.06 -39.00 -0.39 -1.71 16 18 C -0.06 -0.50 9.99 -39.21 -0.39 -0.89 16 19 C 0.06 0.62 7.37 -17.26 -0.13 0.49 16 20 Cl -0.02 -0.17 29.13 -51.86 -1.51 -1.68 16 21 N -0.19 -2.74 11.48 32.90 0.38 -2.36 16 22 N -0.24 -3.82 11.08 31.25 0.35 -3.47 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.09 0.96 6.91 -51.93 -0.36 0.60 16 25 H 0.06 0.47 6.31 -51.93 -0.33 0.15 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.44 8.11 -51.93 -0.42 1.01 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.92 7.01 -51.93 -0.36 0.56 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.40 3.30 6.40 -182.60 -1.17 2.13 16 34 H 0.16 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.16 0.64 8.06 -52.49 -0.42 0.21 16 LS Contribution 321.99 15.07 4.85 4.85 Total: -1.00 -33.47 321.99 -7.89 -41.36 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -5.14 Total: -4.16 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -3.12 Total: -15.23 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 2.05 Total: -41.65 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.51 Total: -1.68 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.47 -7.89 -41.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841605059.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.351 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds