Wall clock time and date at job start Tue Mar 31 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50702 * 120.00036 * 2 1 4 4 C 1.53002 * 109.46770 * 295.00040 * 3 2 1 5 5 C 1.53005 * 109.46692 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46993 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99974 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00113 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00064 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00091 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47023 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.46985 * 120.00060 * 10 8 6 13 13 H 1.48500 * 109.46909 * 239.99973 * 10 8 6 14 14 N 1.28018 * 119.99894 * 180.02562 * 2 1 3 15 15 N 1.40097 * 120.00178 * 359.97438 * 14 2 1 16 16 C 1.39114 * 120.00078 * 180.02562 * 15 14 2 17 17 C 1.39524 * 120.14394 * 180.02562 * 16 15 14 18 18 C 1.38525 * 117.91366 * 179.97438 * 17 16 15 19 19 C 1.38960 * 118.02726 * 359.97438 * 18 17 16 20 20 Cl 1.73600 * 120.00310 * 180.02562 * 19 18 17 21 21 N 1.31893 * 119.99380 * 0.02562 * 19 18 17 22 22 N 1.28354 * 122.26385 * 0.02562 * 21 19 18 23 23 H 1.08997 * 109.46965 * 269.99482 * 1 2 3 24 24 H 1.08997 * 109.47275 * 29.99967 * 1 2 3 25 25 H 1.09001 * 109.47199 * 150.00231 * 1 2 3 26 26 H 1.08994 * 109.47030 * 54.99803 * 3 2 1 27 27 H 1.08999 * 109.47231 * 175.00555 * 3 2 1 28 28 H 1.08996 * 109.47882 * 299.99802 * 4 3 2 29 29 H 1.09006 * 109.46980 * 60.00635 * 4 3 2 30 30 H 1.08994 * 109.47290 * 299.99874 * 5 4 3 31 31 H 1.08999 * 109.47049 * 60.00674 * 5 4 3 32 32 H 0.96995 * 120.00716 * 179.97438 * 9 8 6 33 33 H 0.96998 * 120.00174 * 0.02562 * 15 14 2 34 34 H 1.08001 * 121.04863 * 359.95801 * 17 16 15 35 35 H 1.07999 * 120.98828 * 179.72465 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9875 2.0515 -1.3074 5 6 2.7520 3.3769 -1.3071 6 6 2.4827 4.1124 -2.5945 7 1 1.8310 3.6783 -3.3384 8 6 3.0681 5.3397 -2.8229 9 7 3.8613 5.8686 -1.9169 10 14 2.7337 6.2517 -4.4184 11 1 1.8143 5.4488 -5.2642 12 1 2.1095 7.5648 -4.1164 13 1 4.0119 6.4663 -5.1432 14 7 2.1471 -1.1087 -0.0005 15 7 1.4466 -2.3220 -0.0005 16 6 2.1422 -3.5267 -0.0005 17 6 1.4476 -4.7368 -0.0010 18 6 2.1864 -5.9086 -0.0016 19 6 3.5722 -5.8067 -0.0021 20 17 4.5482 -7.2425 -0.0034 21 7 4.1461 -4.6192 -0.0015 22 7 3.4669 -3.5300 0.0000 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 1.9317 1.9145 0.8418 27 1 3.3288 1.1079 0.0895 28 1 2.3163 1.4423 -2.1492 29 1 0.9192 2.2488 -1.3969 30 1 2.4228 3.9861 -0.4654 31 1 3.8204 3.1800 -1.2174 32 1 4.2735 6.7318 -2.0776 33 1 0.4766 -2.3220 -0.0005 34 1 0.3678 -4.7593 -0.0008 35 1 1.6997 -6.8727 0.0025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841605059.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:10 Heat of formation + Delta-G solvation = 59.608117 kcal Electronic energy + Delta-G solvation = -18269.480435 eV Core-core repulsion = 15135.733754 eV Total energy + Delta-G solvation = -3133.746681 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.08100 -39.40940 -37.84536 -36.68019 -35.28592 -34.20856 -33.52396 -31.29217 -29.29860 -28.87645 -25.97683 -25.56494 -24.46360 -22.19414 -20.67252 -19.12635 -18.59023 -18.22478 -18.12683 -17.20538 -16.59617 -16.49034 -15.66975 -15.29732 -15.19359 -14.84439 -14.50099 -14.20054 -13.90125 -13.61717 -13.24014 -12.91045 -12.82246 -12.67612 -12.62285 -12.45389 -12.44301 -12.35209 -11.52126 -11.43990 -11.37389 -11.18089 -10.99904 -10.89165 -10.57607 -10.52513 -9.06262 -8.17166 -6.27667 -0.28382 -0.21027 0.62504 1.18419 1.41056 1.42053 1.43764 1.54764 2.42974 2.44962 3.04158 3.16310 3.35812 3.62530 3.69431 3.77559 3.97145 4.20604 4.34175 4.42123 4.56594 4.63046 4.69244 4.81301 4.89967 4.99359 5.10478 5.24306 5.32123 5.43788 5.56970 5.80187 5.83942 5.91003 6.28409 6.90281 7.11269 7.41388 7.68314 8.94815 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028299 B = 0.002489 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.188222 B =11245.383302 C =11757.165563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.115 3.885 3 C -0.059 4.059 4 C -0.086 4.086 5 C 0.021 3.979 6 C -0.540 4.540 7 H 0.061 0.939 8 C -0.003 4.003 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.261 1.261 12 H -0.276 1.276 13 H -0.282 1.282 14 N -0.282 5.282 15 N -0.556 5.556 16 C 0.341 3.659 17 C -0.140 4.140 18 C -0.055 4.055 19 C 0.053 3.947 20 Cl -0.009 7.009 21 N -0.237 5.237 22 N -0.302 5.302 23 H 0.105 0.895 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.002 0.998 31 H -0.014 1.014 32 H 0.263 0.737 33 H 0.414 0.586 34 H 0.206 0.794 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.134 -26.155 5.867 29.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.079 4.079 3 C -0.098 4.098 4 C -0.124 4.124 5 C -0.016 4.016 6 C -0.578 4.578 7 H 0.079 0.921 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.185 1.185 12 H -0.202 1.202 13 H -0.208 1.208 14 N -0.087 5.087 15 N -0.283 5.283 16 C 0.099 3.901 17 C -0.173 4.173 18 C -0.083 4.083 19 C -0.124 4.124 20 Cl 0.019 6.981 21 N -0.080 5.080 22 N -0.152 5.152 23 H 0.123 0.877 24 H 0.112 0.888 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.020 0.980 31 H 0.005 0.995 32 H 0.072 0.928 33 H 0.260 0.740 34 H 0.223 0.777 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.636 -25.662 5.908 28.041 hybrid contribution -1.699 0.224 -0.696 1.849 sum -11.335 -25.438 5.212 28.332 Atomic orbital electron populations 1.21435 0.90017 1.05041 1.05078 1.25256 0.96285 0.92730 0.93595 1.20460 0.99383 0.90216 0.99768 1.21354 1.00684 0.95448 0.94943 1.19040 0.94274 0.92600 0.95690 1.21744 1.28263 1.03793 1.03970 0.92120 1.25976 0.94940 0.98718 1.00387 1.70099 1.32436 1.18508 1.36401 0.85431 0.78065 0.78454 0.79295 1.18509 1.20188 1.20815 1.74574 1.25925 0.91953 1.16230 1.45106 1.07014 0.99446 1.76769 1.20138 0.91308 0.86637 0.92025 1.22261 1.04299 0.88241 1.02488 1.22433 0.90418 1.02121 0.93348 1.23654 0.92254 0.90645 1.05860 1.98403 1.71761 1.31230 1.96728 1.72737 1.32088 0.94846 1.08292 1.73273 1.05913 1.17777 1.18282 0.87715 0.88782 0.90121 0.88287 0.92225 0.94212 0.91018 0.97953 0.99530 0.92848 0.74031 0.77696 0.77694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.46 71.24 0.67 -1.95 16 2 C 0.11 3.05 6.55 46.53 0.30 3.36 16 3 C -0.06 -1.90 5.60 29.85 0.17 -1.73 16 4 C -0.09 -3.34 5.03 30.60 0.15 -3.18 16 5 C 0.02 1.10 4.97 29.85 0.15 1.25 16 6 C -0.54 -30.53 9.11 25.60 0.23 -30.30 16 7 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 8 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 9 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 10 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 11 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 N -0.28 -8.51 10.99 -41.20 -0.45 -8.96 16 15 N -0.56 -12.31 6.26 -55.07 -0.34 -12.66 16 16 C 0.34 7.96 7.69 133.10 1.02 8.98 16 17 C -0.14 -1.71 10.06 22.65 0.23 -1.48 16 18 C -0.05 -0.66 9.99 22.51 0.22 -0.43 16 19 C 0.05 1.10 7.37 84.86 0.63 1.73 16 20 Cl -0.01 -0.16 29.13 -2.72 -0.08 -0.24 16 21 N -0.24 -7.10 11.48 -49.82 -0.57 -7.67 16 22 N -0.30 -9.72 11.08 -55.04 -0.61 -10.33 16 23 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.09 1.63 6.91 -2.39 -0.02 1.61 16 25 H 0.08 1.00 6.31 -2.39 -0.02 0.98 16 26 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.06 2.19 8.11 -2.39 -0.02 2.17 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.07 2.50 7.01 -2.38 -0.02 2.48 16 30 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 31 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 32 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.41 5.58 6.40 -213.32 -1.36 4.22 16 34 H 0.21 0.37 8.06 -2.91 -0.02 0.35 16 35 H 0.21 0.52 8.06 -2.91 -0.02 0.50 16 Total: -1.00 -77.59 321.99 4.25 -73.35 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -0.25 Total: 0.51 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 4.24 Total: -23.46 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -1.69 Total: -96.52 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -77.59 4.25 -73.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841605059.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.954 kcal (2) G-P(sol) polarization free energy of solvation -77.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds