Wall clock time and date at job start Tue Mar 31 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50696 * 119.99661 * 2 1 4 4 C 1.53002 * 109.47337 * 294.99987 * 3 2 1 5 5 C 1.52993 * 109.47407 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47342 * 180.02562 * 5 4 3 7 7 H 1.07996 * 120.00229 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00096 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00364 * 180.02562 * 8 6 5 10 10 Si 1.86804 * 120.00073 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47179 * 89.99711 * 10 8 6 12 12 H 1.48507 * 109.47059 * 209.99990 * 10 8 6 13 13 H 1.48504 * 109.46993 * 329.99740 * 10 8 6 14 14 N 1.28018 * 120.00064 * 180.02562 * 2 1 3 15 15 N 1.40099 * 119.99708 * 359.97438 * 14 2 1 16 16 C 1.38999 * 119.99712 * 180.02562 * 15 14 2 17 17 C 1.39323 * 120.08692 * 179.97438 * 16 15 14 18 18 N 1.31943 * 119.92276 * 180.02562 * 17 16 15 19 19 C 1.32244 * 120.10341 * 359.97438 * 18 17 16 20 20 C 1.38370 * 120.17547 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 119.96013 * 180.02562 * 20 19 18 22 22 N 1.32305 * 120.07668 * 359.97438 * 20 19 18 23 23 H 1.09001 * 109.46967 * 269.99531 * 1 2 3 24 24 H 1.09000 * 109.47444 * 29.99797 * 1 2 3 25 25 H 1.09003 * 109.46905 * 150.00185 * 1 2 3 26 26 H 1.08998 * 109.47471 * 55.00393 * 3 2 1 27 27 H 1.09007 * 109.46761 * 175.00867 * 3 2 1 28 28 H 1.08998 * 109.47171 * 300.00589 * 4 3 2 29 29 H 1.08996 * 109.46782 * 60.00020 * 4 3 2 30 30 H 1.09005 * 109.46986 * 300.00563 * 5 4 3 31 31 H 1.08996 * 109.47434 * 60.00050 * 5 4 3 32 32 H 0.96997 * 120.00545 * 180.02562 * 9 8 6 33 33 H 0.96999 * 120.00437 * 0.02562 * 15 14 2 34 34 H 1.07993 * 120.03736 * 0.03740 * 17 16 15 35 35 H 1.07997 * 119.90680 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 1.9875 2.0516 -1.3074 5 6 2.7529 3.3763 -1.3076 6 6 2.4835 4.1119 -2.5950 7 1 1.8313 3.6781 -3.3385 8 6 3.0689 5.3392 -2.8233 9 7 2.8335 5.9814 -3.9466 10 14 4.1966 6.0899 -1.5371 11 1 5.5938 5.6545 -1.7890 12 1 4.1180 7.5709 -1.6137 13 1 3.7742 5.6410 -0.1859 14 7 2.1471 -1.1087 -0.0005 15 7 1.4466 -2.3219 -0.0005 16 6 2.1416 -3.5257 -0.0005 17 6 1.4468 -4.7333 0.0000 18 7 2.1098 -5.8741 0.0006 19 6 3.4323 -5.8727 0.0000 20 6 4.1265 -4.6757 -0.0005 21 17 5.8625 -4.6804 -0.0018 22 7 3.4688 -3.5277 -0.0010 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.9317 1.9145 0.8418 27 1 3.3288 1.1079 0.0894 28 1 2.3162 1.4423 -2.1492 29 1 0.9192 2.2488 -1.3969 30 1 2.4245 3.9859 -0.4657 31 1 3.8211 3.1789 -1.2183 32 1 3.2456 6.8446 -4.1074 33 1 0.4766 -2.3220 -0.0005 34 1 0.3669 -4.7357 -0.0001 35 1 3.9717 -6.8082 0.0009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841619664.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:14 Heat of formation + Delta-G solvation = 74.585148 kcal Electronic energy + Delta-G solvation = -18433.835927 eV Core-core repulsion = 15300.738699 eV Total energy + Delta-G solvation = -3133.097228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35496 -38.44237 -37.06954 -35.57001 -34.29374 -33.32483 -31.92035 -30.12511 -28.41724 -27.69344 -24.99528 -24.20965 -23.09268 -20.35991 -19.70674 -18.44481 -17.59243 -17.18482 -16.68125 -16.26875 -15.69630 -15.53469 -14.51952 -14.32247 -14.06582 -13.67859 -13.39745 -12.88267 -12.67201 -12.43056 -12.15301 -12.11771 -11.89132 -11.68858 -11.64384 -11.24567 -10.95516 -10.80074 -10.24002 -9.95507 -9.89965 -9.75667 -9.62083 -9.46885 -9.19854 -8.54057 -8.10690 -6.04691 -4.03013 0.36262 0.79923 1.36527 2.14397 2.21139 3.31813 3.35587 3.39059 3.41893 3.86362 3.96424 4.04484 4.45247 4.54740 4.69167 4.81888 4.89031 5.11790 5.24747 5.29753 5.61816 5.69792 5.75408 5.81488 5.99849 6.23115 6.48300 6.52606 6.59287 6.85661 6.98354 7.27698 7.32634 7.40797 7.78566 8.09215 8.52855 8.99979 9.57767 11.08800 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.003033 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.887778 B = 9230.496580 C =10116.899037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.114 3.886 3 C -0.067 4.067 4 C -0.095 4.095 5 C -0.014 4.014 6 C -0.521 4.521 7 H 0.071 0.929 8 C 0.066 3.934 9 N -0.905 5.905 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.264 1.264 14 N -0.242 5.242 15 N -0.565 5.565 16 C 0.398 3.602 17 C -0.004 4.004 18 N -0.385 5.385 19 C 0.000 4.000 20 C 0.177 3.823 21 Cl -0.013 7.013 22 N -0.464 5.464 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.060 0.940 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.017 0.983 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.398 0.602 34 H 0.173 0.827 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.137 -22.535 11.207 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.080 4.080 3 C -0.107 4.107 4 C -0.134 4.134 5 C -0.051 4.051 6 C -0.559 4.559 7 H 0.089 0.911 8 C -0.135 4.135 9 N -0.544 5.544 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.189 1.189 14 N -0.046 5.046 15 N -0.289 5.289 16 C 0.159 3.841 17 C -0.174 4.174 18 N -0.098 5.098 19 C -0.161 4.161 20 C 0.008 3.992 21 Cl 0.015 6.985 22 N -0.187 5.187 23 H 0.101 0.899 24 H 0.114 0.886 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.242 0.758 34 H 0.190 0.810 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.006 -22.793 11.115 25.438 hybrid contribution -0.445 0.855 0.465 1.070 sum -2.450 -21.938 11.580 24.927 Atomic orbital electron populations 1.21398 0.93114 1.04246 1.03412 1.25411 0.94523 0.94199 0.93852 1.20713 1.00094 0.88845 1.01009 1.21454 1.00871 0.97319 0.93736 1.19578 0.95329 0.92410 0.97810 1.21132 1.29496 1.03244 1.02040 0.91099 1.25040 0.96277 0.96936 0.95295 1.69913 1.44631 1.15230 1.24590 0.86771 0.81498 0.78171 0.82806 1.20259 1.21463 1.18906 1.74700 1.23741 0.90551 1.15596 1.45455 1.06546 1.00659 1.76195 1.18896 0.88003 0.85747 0.91486 1.23102 1.01605 0.86458 1.06223 1.68394 1.07697 1.27584 1.06116 1.23221 0.90285 0.97776 1.04817 1.22668 0.88913 0.90280 0.97361 1.98436 1.05610 1.98421 1.96049 1.67344 1.07032 1.28497 1.15849 0.89910 0.88618 0.92082 0.89677 0.89996 0.92518 0.92356 0.96426 0.96802 0.92740 0.75844 0.80958 0.80640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.46 36.01 0.34 -1.18 16 2 C 0.11 1.48 6.55 -78.91 -0.52 0.97 16 3 C -0.07 -0.99 5.60 -27.88 -0.16 -1.14 16 4 C -0.09 -1.74 5.03 -26.73 -0.13 -1.87 16 5 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 6 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 7 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 8 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 9 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 10 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 14 N -0.24 -3.50 10.98 35.60 0.39 -3.11 16 15 N -0.57 -6.52 6.26 31.22 0.20 -6.33 16 16 C 0.40 4.80 7.60 -154.68 -1.18 3.63 16 17 C 0.00 -0.04 11.08 -17.10 -0.19 -0.23 16 18 N -0.38 -3.95 10.49 -12.84 -0.13 -4.09 16 19 C 0.00 0.00 11.00 -17.33 -0.19 -0.19 16 20 C 0.18 2.08 7.28 -17.30 -0.13 1.96 16 21 Cl -0.01 -0.14 29.13 -51.86 -1.51 -1.65 16 22 N -0.46 -6.56 10.06 -9.35 -0.09 -6.65 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.10 0.93 6.91 -51.93 -0.36 0.57 16 25 H 0.06 0.48 6.31 -51.93 -0.33 0.15 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.01 7.01 -51.93 -0.36 0.65 16 30 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 31 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.40 3.23 6.39 -182.60 -1.17 2.06 16 34 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 318.22 15.07 4.80 4.80 Total: -1.00 -33.43 318.22 -8.05 -41.48 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -5.11 Total: -2.59 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.69 Total: -11.67 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 1.13 Total: -47.24 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.51 Total: -1.65 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.43 -8.05 -41.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841619664.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.069 kcal (2) G-P(sol) polarization free energy of solvation -33.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds