Wall clock time and date at job start Tue Mar 31 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50697 * 119.99935 * 2 1 4 4 C 1.53002 * 109.47004 * 295.00392 * 3 2 1 5 5 C 1.52998 * 109.46895 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47101 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00378 * 0.02562 * 6 5 4 8 8 C 1.37886 * 120.00354 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99395 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00347 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46894 * 89.99946 * 10 8 6 12 12 H 1.48494 * 109.47471 * 209.99940 * 10 8 6 13 13 H 1.48499 * 109.47169 * 330.00314 * 10 8 6 14 14 N 1.28017 * 119.99769 * 180.02562 * 2 1 3 15 15 N 1.40096 * 120.00349 * 359.97438 * 14 2 1 16 16 C 1.39044 * 120.00042 * 180.02562 * 15 14 2 17 17 N 1.32676 * 120.10328 * 0.02562 * 16 15 14 18 18 C 1.32232 * 119.92379 * 179.97438 * 17 16 15 19 19 C 1.38175 * 120.14168 * 359.97438 * 18 17 16 20 20 N 1.32301 * 120.20271 * 0.02562 * 19 18 17 21 21 C 1.32009 * 120.07835 * 0.02562 * 20 19 18 22 22 Cl 1.73601 * 120.07515 * 179.97438 * 21 20 19 23 23 H 1.09000 * 109.47208 * 269.99829 * 1 2 3 24 24 H 1.08995 * 109.47406 * 29.99876 * 1 2 3 25 25 H 1.09003 * 109.47423 * 150.00380 * 1 2 3 26 26 H 1.09004 * 109.47065 * 54.99955 * 3 2 1 27 27 H 1.09002 * 109.47095 * 175.00295 * 3 2 1 28 28 H 1.09004 * 109.46853 * 299.99693 * 4 3 2 29 29 H 1.08993 * 109.47227 * 59.99819 * 4 3 2 30 30 H 1.08998 * 109.47157 * 299.99949 * 5 4 3 31 31 H 1.09002 * 109.47207 * 59.99901 * 5 4 3 32 32 H 0.97003 * 119.99495 * 179.97438 * 9 8 6 33 33 H 0.97001 * 120.00112 * 0.02562 * 15 14 2 34 34 H 1.07995 * 119.93176 * 179.97438 * 18 17 16 35 35 H 1.08000 * 119.89724 * 179.72199 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9874 2.0516 -1.3073 5 6 2.7529 3.3763 -1.3076 6 6 2.4845 4.1113 -2.5955 7 1 1.8328 3.6773 -3.3393 8 6 3.0702 5.3386 -2.8239 9 7 3.8634 5.8674 -1.9179 10 14 2.7380 6.2493 -4.4206 11 1 1.5506 7.1252 -4.2530 12 1 3.9188 7.0782 -4.7726 13 1 2.4805 5.2686 -5.5055 14 7 2.1471 -1.1087 -0.0005 15 7 1.4466 -2.3220 -0.0005 16 6 2.1419 -3.5261 -0.0005 17 7 3.4686 -3.5285 0.0000 18 6 4.1262 -4.6757 0.0005 19 6 3.4346 -5.8719 0.0011 20 7 2.1115 -5.8757 0.0006 21 6 1.4466 -4.7353 -0.0010 22 17 -0.2894 -4.7404 -0.0023 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 1.9317 1.9145 0.8418 27 1 3.3288 1.1079 0.0895 28 1 2.3163 1.4422 -2.1492 29 1 0.9192 2.2488 -1.3969 30 1 2.4246 3.9858 -0.4657 31 1 3.8212 3.1787 -1.2183 32 1 4.2757 6.7305 -2.0788 33 1 0.4766 -2.3220 -0.0005 34 1 5.2062 -4.6778 0.0005 35 1 3.9756 -6.8066 -0.0031 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841626700.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:16 Heat of formation + Delta-G solvation = 70.836105 kcal Electronic energy + Delta-G solvation = -18528.376978 eV Core-core repulsion = 15395.117179 eV Total energy + Delta-G solvation = -3133.259799 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31101 -38.36483 -37.13015 -35.50589 -34.21514 -33.29479 -31.81806 -29.92975 -28.36933 -27.26338 -24.95583 -24.17323 -23.17124 -20.49202 -19.63529 -18.36322 -17.57348 -17.36450 -16.36865 -16.05029 -15.72006 -15.08639 -14.57981 -14.27323 -13.97837 -13.81261 -13.47404 -12.78542 -12.44176 -12.37666 -12.04655 -11.90552 -11.80495 -11.76614 -11.42573 -11.18190 -10.84494 -10.74856 -10.55994 -10.08286 -9.87320 -9.69982 -9.48317 -9.33242 -9.08754 -8.35181 -8.01602 -6.00505 -4.02768 0.41230 0.83118 1.36880 2.21536 2.23720 3.31482 3.38098 3.40151 3.41452 3.78822 3.91588 4.26374 4.45508 4.63540 4.75611 4.89353 4.96253 5.20963 5.32365 5.35617 5.72919 5.80759 5.85165 5.95510 6.11533 6.32158 6.55874 6.66743 6.80193 6.98747 7.07598 7.40302 7.66675 7.80640 7.99471 8.15175 8.41513 9.04220 9.61303 11.10793 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027815 B = 0.002836 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.421872 B = 9871.970620 C =10284.100191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 C -0.064 4.064 4 C -0.103 4.103 5 C 0.021 3.979 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.242 5.242 15 N -0.563 5.563 16 C 0.401 3.599 17 N -0.450 5.450 18 C 0.109 3.891 19 C -0.003 4.003 20 N -0.394 5.394 21 C 0.058 3.942 22 Cl -0.026 7.026 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.398 0.602 34 H 0.180 0.820 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.123 -21.701 6.414 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.077 4.077 3 C -0.103 4.103 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.559 4.559 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.047 5.047 15 N -0.286 5.286 16 C 0.161 3.839 17 N -0.172 5.172 18 C -0.054 4.054 19 C -0.165 4.165 20 N -0.110 5.110 21 C -0.118 4.118 22 Cl 0.002 6.998 23 H 0.102 0.898 24 H 0.115 0.885 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.242 0.758 34 H 0.197 0.803 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.264 -21.931 6.453 23.254 hybrid contribution -1.551 0.657 -0.906 1.913 sum -5.814 -21.274 5.546 22.741 Atomic orbital electron populations 1.21415 0.93282 1.04143 1.03508 1.25523 0.94519 0.94309 0.93346 1.20703 1.00033 0.88437 1.01159 1.21643 1.00707 0.98386 0.93450 1.19102 0.95418 0.89923 0.97127 1.21243 1.28405 1.03353 1.02932 0.92735 1.25020 0.95178 0.97566 0.96680 1.69963 1.31245 1.17941 1.34276 0.86611 0.77731 0.79813 0.83951 1.20689 1.21223 1.19908 1.74679 1.23609 0.90357 1.16031 1.45575 1.06834 1.00696 1.75465 1.18429 0.89341 0.84165 0.91966 1.68379 1.04625 1.29333 1.14814 1.23830 1.02180 0.87416 0.91955 1.23430 0.88650 1.00278 1.04121 1.67577 1.09651 1.26933 1.06844 1.21819 0.88291 0.89534 1.12178 1.98394 1.06266 1.98239 1.96933 0.89822 0.88548 0.92250 0.89602 0.89924 0.93089 0.92960 0.96371 0.96316 0.92993 0.75832 0.80274 0.80615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.46 36.01 0.34 -1.44 16 2 C 0.12 1.65 6.55 -78.91 -0.52 1.14 16 3 C -0.06 -1.01 5.60 -27.88 -0.16 -1.17 16 4 C -0.10 -1.98 5.03 -26.73 -0.13 -2.12 16 5 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 6 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 7 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 8 C 0.06 1.61 5.46 -17.81 -0.10 1.51 16 9 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 10 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 14 N -0.24 -3.78 10.98 35.60 0.39 -3.38 16 15 N -0.56 -7.64 6.22 31.25 0.19 -7.45 16 16 C 0.40 5.44 7.61 -154.61 -1.18 4.27 16 17 N -0.45 -6.14 10.07 -12.19 -0.12 -6.26 16 18 C 0.11 1.02 11.21 -17.40 -0.20 0.83 16 19 C 0.00 -0.03 11.21 -17.37 -0.19 -0.22 16 20 N -0.39 -4.53 10.48 -10.00 -0.10 -4.64 16 21 C 0.06 0.70 7.31 -17.01 -0.12 0.58 16 22 Cl -0.03 -0.27 27.78 -51.86 -1.44 -1.71 16 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.10 1.04 6.91 -51.93 -0.36 0.68 16 25 H 0.06 0.58 6.31 -51.93 -0.33 0.25 16 26 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.94 7.01 -51.93 -0.36 0.58 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.40 4.56 5.06 -182.60 -0.92 3.64 16 34 H 0.18 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -32.69 319.49 -8.16 -40.85 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.90 Total: -1.77 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -2.71 Total: -11.02 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 1.09 Total: -47.60 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.44 Total: -1.71 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.69 -8.16 -40.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841626700.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.686 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds