Wall clock time and date at job start Tue Mar 31 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50706 * 119.99758 * 2 1 4 4 C 1.53001 * 109.47148 * 295.00074 * 3 2 1 5 5 C 1.52998 * 109.47042 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46817 * 180.02562 * 5 4 3 7 7 H 1.07994 * 120.00336 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99638 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00185 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99806 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47035 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.46881 * 119.99901 * 10 8 6 13 13 H 1.48495 * 109.47137 * 239.99696 * 10 8 6 14 14 N 1.28008 * 120.00540 * 180.02562 * 2 1 3 15 15 N 1.40102 * 120.00122 * 359.97438 * 14 2 1 16 16 C 1.38636 * 120.00400 * 180.02562 * 15 14 2 17 17 N 1.33012 * 120.54245 * 359.97438 * 16 15 14 18 18 C 1.31738 * 120.70473 * 180.02562 * 17 16 15 19 19 N 1.31787 * 121.86154 * 0.02562 * 18 17 16 20 20 C 1.32554 * 121.02594 * 359.97438 * 19 18 17 21 21 C 1.38229 * 119.18386 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 120.84672 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.46959 * 269.99752 * 1 2 3 24 24 H 1.08999 * 109.47537 * 30.00199 * 1 2 3 25 25 H 1.09003 * 109.46677 * 150.00158 * 1 2 3 26 26 H 1.09001 * 109.46861 * 55.00333 * 3 2 1 27 27 H 1.09001 * 109.47364 * 174.99832 * 3 2 1 28 28 H 1.08993 * 109.47116 * 299.99874 * 4 3 2 29 29 H 1.09000 * 109.46722 * 59.99907 * 4 3 2 30 30 H 1.08999 * 109.47621 * 299.99785 * 5 4 3 31 31 H 1.09000 * 109.47244 * 60.00465 * 5 4 3 32 32 H 0.97000 * 119.99955 * 180.02562 * 9 8 6 33 33 H 0.96998 * 119.99283 * 359.97438 * 15 14 2 34 34 H 1.07994 * 119.07407 * 180.02562 * 18 17 16 35 35 H 1.08007 * 120.41099 * 179.72918 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 1.9875 2.0517 -1.3073 5 6 2.7519 3.3770 -1.3070 6 6 2.4825 4.1125 -2.5945 7 1 1.8309 3.6784 -3.3383 8 6 3.0680 5.3398 -2.8228 9 7 3.8611 5.8688 -1.9168 10 14 2.7346 6.2512 -4.4189 11 1 1.8161 5.4479 -5.2651 12 1 2.1098 7.5644 -4.1179 13 1 4.0133 6.4658 -5.1428 14 7 2.1472 -1.1085 -0.0005 15 7 1.4468 -2.3219 -0.0005 16 6 2.1400 -3.5225 -0.0005 17 7 3.4701 -3.5350 -0.0010 18 6 4.1320 -4.6740 -0.0015 19 7 3.5139 -5.8379 -0.0020 20 6 2.1902 -5.9085 -0.0016 21 6 1.4529 -4.7393 -0.0011 22 17 -0.2826 -4.7814 -0.0011 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.9317 1.9145 0.8419 27 1 3.3288 1.1081 0.0896 28 1 2.3163 1.4424 -2.1491 29 1 0.9192 2.2488 -1.3968 30 1 2.4227 3.9862 -0.4653 31 1 3.8203 3.1802 -1.2174 32 1 4.2726 6.7324 -2.0773 33 1 0.4768 -2.3219 0.0003 34 1 5.2118 -4.6535 -0.0015 35 1 1.6939 -6.8678 -0.0064 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841638347.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:12 Heat of formation + Delta-G solvation = 68.806657 kcal Electronic energy + Delta-G solvation = -18517.269767 eV Core-core repulsion = 15383.921965 eV Total energy + Delta-G solvation = -3133.347802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21101 -38.42443 -37.11732 -35.54511 -33.90277 -32.90049 -31.93850 -30.33690 -28.46769 -27.30915 -24.71695 -24.20754 -23.18484 -20.52880 -19.65118 -18.67685 -17.45970 -16.56885 -16.42498 -16.08276 -15.59332 -15.36356 -14.58248 -14.29216 -13.99684 -13.84308 -13.64096 -12.74935 -12.58554 -12.45246 -12.07059 -11.88683 -11.80403 -11.46477 -11.38203 -10.99898 -10.85428 -10.64191 -10.53970 -10.08859 -9.84376 -9.71404 -9.46797 -9.35425 -9.09110 -8.36075 -8.22721 -6.01069 -4.03360 0.50505 0.84551 1.59343 2.19696 2.22010 3.30366 3.38126 3.41866 3.53016 3.77568 3.91030 4.15187 4.44915 4.60625 4.63145 4.92390 5.02273 5.28657 5.30881 5.35205 5.74372 5.79068 5.87489 5.93625 6.04351 6.30869 6.54036 6.65009 6.78322 6.82937 7.06402 7.66238 7.77740 7.80313 7.98868 8.15623 8.40836 9.03846 9.60859 11.10244 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027597 B = 0.002830 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.377596 B = 9890.784507 C =10310.113189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.119 3.881 3 C -0.064 4.064 4 C -0.103 4.103 5 C 0.021 3.979 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.242 5.242 15 N -0.559 5.559 16 C 0.474 3.526 17 N -0.528 5.528 18 C 0.340 3.660 19 N -0.552 5.552 20 C 0.196 3.804 21 C -0.216 4.216 22 Cl -0.051 7.051 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.260 0.740 33 H 0.397 0.603 34 H 0.205 0.795 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.391 -21.866 6.410 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.074 4.074 3 C -0.104 4.104 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.559 4.559 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.046 5.046 15 N -0.282 5.282 16 C 0.229 3.771 17 N -0.250 5.250 18 C 0.051 3.949 19 N -0.270 5.270 20 C 0.031 3.969 21 C -0.254 4.254 22 Cl -0.023 7.023 23 H 0.102 0.898 24 H 0.115 0.885 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.241 0.759 34 H 0.221 0.779 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.544 -22.073 6.447 23.654 hybrid contribution -2.484 0.781 -0.901 2.755 sum -8.028 -21.292 5.546 23.421 Atomic orbital electron populations 1.21422 0.93263 1.04169 1.03529 1.25566 0.94534 0.94368 0.92954 1.20718 1.00087 0.88380 1.01200 1.21642 1.00713 0.98401 0.93417 1.19109 0.95437 0.89892 0.97167 1.21275 1.28361 1.03315 1.02927 0.92683 1.25020 0.95186 0.97575 0.96675 1.69969 1.31330 1.17911 1.34190 0.86559 0.78066 0.79717 0.83799 1.19782 1.21025 1.21009 1.74743 1.23402 0.90296 1.16204 1.45575 1.06985 1.01014 1.74608 1.17872 0.88654 0.83524 0.87090 1.68314 1.05077 1.31574 1.20056 1.25017 1.01358 0.81489 0.87054 1.68574 1.09032 1.29853 1.19547 1.22949 0.89215 0.96767 0.87937 1.22078 0.86980 0.95550 1.20794 1.98362 1.07950 1.98506 1.97457 0.89792 0.88490 0.92270 0.89556 0.89853 0.93074 0.92970 0.96357 0.96291 0.93037 0.75869 0.77872 0.80771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.46 36.01 0.34 -1.42 16 2 C 0.12 1.68 6.55 -78.91 -0.52 1.16 16 3 C -0.06 -1.02 5.60 -27.88 -0.16 -1.17 16 4 C -0.10 -1.97 5.03 -26.73 -0.13 -2.11 16 5 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 6 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 7 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 9 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 10 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 N -0.24 -3.75 11.00 35.60 0.39 -3.36 16 15 N -0.56 -7.46 6.21 31.28 0.19 -7.26 16 16 C 0.47 6.25 7.64 -154.62 -1.18 5.07 16 17 N -0.53 -7.35 10.04 -13.76 -0.14 -7.48 16 18 C 0.34 3.74 12.28 -92.21 -1.13 2.60 16 19 N -0.55 -5.86 10.43 -14.64 -0.15 -6.01 16 20 C 0.20 1.83 11.11 -17.24 -0.19 1.64 16 21 C -0.22 -2.27 6.39 -39.02 -0.25 -2.52 16 22 Cl -0.05 -0.45 27.78 -51.86 -1.44 -1.89 16 23 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.10 1.03 6.91 -51.93 -0.36 0.67 16 25 H 0.06 0.57 6.31 -51.93 -0.33 0.24 16 26 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.94 7.01 -51.93 -0.36 0.57 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 33 H 0.40 4.45 5.18 -182.60 -0.95 3.50 16 34 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.18 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 319.61 15.07 4.82 4.82 Total: -1.00 -32.08 319.61 -9.30 -41.38 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.92 Total: -1.15 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -3.77 Total: -9.62 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 1.03 Total: -49.96 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.44 Total: -1.89 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.08 -9.30 -41.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841638347.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.185 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds