Wall clock time and date at job start Tue Mar 31 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99732 * 2 1 4 4 H 1.48504 * 109.47104 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47218 * 300.00118 * 3 2 1 6 6 H 1.48499 * 109.47175 * 60.00285 * 3 2 1 7 7 C 1.37870 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00643 * 173.55143 * 7 2 1 9 9 C 1.50696 * 119.99933 * 353.55322 * 7 2 1 10 10 C 1.53005 * 115.55468 * 85.40164 * 9 7 2 11 11 N 1.46503 * 109.46803 * 65.14301 * 10 9 7 12 12 C 1.34774 * 119.99810 * 178.27959 * 11 10 9 13 13 O 1.21588 * 120.00312 * 359.97438 * 12 11 10 14 14 C 1.47532 * 119.99748 * 180.02562 * 12 11 10 15 15 C 1.40325 * 120.60433 * 269.99312 * 14 12 11 16 16 F 1.35099 * 120.87778 * 0.02562 * 15 14 12 17 17 C 1.38742 * 118.24816 * 180.27365 * 15 14 12 18 18 C 1.38140 * 119.34701 * 359.52866 * 17 15 14 19 19 N 1.31991 * 121.18099 * 0.48354 * 18 17 15 20 20 C 1.31933 * 121.92650 * 359.74643 * 19 18 17 21 21 F 1.35102 * 119.74588 * 179.97438 * 20 19 18 22 22 C 1.53006 * 117.50241 * 231.07527 * 9 7 2 23 23 C 1.53001 * 117.49742 * 299.73463 * 9 7 2 24 24 H 0.96996 * 120.00189 * 5.05166 * 1 2 3 25 25 H 1.09003 * 109.46746 * 305.14559 * 10 9 7 26 26 H 1.08996 * 109.47295 * 185.14307 * 10 9 7 27 27 H 0.97002 * 120.00106 * 358.27312 * 11 10 9 28 28 H 1.08005 * 120.32986 * 179.74940 * 17 15 14 29 29 H 1.08009 * 119.40877 * 180.20739 * 18 17 15 30 30 H 1.08995 * 117.49990 * 215.00538 * 22 9 7 31 31 H 1.08998 * 117.49253 * 0.02562 * 22 9 7 32 32 H 1.08995 * 117.49906 * 359.97438 * 23 9 7 33 33 H 1.09010 * 117.50055 * 144.97321 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0795 -1.1969 -0.1056 9 6 1.2584 -2.4950 0.1454 10 6 0.7022 -3.0860 -1.1517 11 7 1.8113 -3.4583 -2.0336 12 6 1.5600 -4.0346 -3.2256 13 8 0.4130 -4.2461 -3.5690 14 6 2.6769 -4.4100 -4.1135 15 6 3.1726 -3.5016 -5.0611 16 9 2.6403 -2.2657 -5.1815 17 6 4.2204 -3.9078 -5.8748 18 6 4.7438 -5.1769 -5.7215 19 7 4.2588 -6.0121 -4.8219 20 6 3.2607 -5.6782 -4.0263 21 9 2.7984 -6.5682 -3.1212 22 6 1.7473 -3.4738 1.2150 23 6 0.4420 -2.7017 1.4228 24 1 -0.4850 0.8367 -0.0740 25 1 0.0754 -2.3456 -1.6488 26 1 0.1077 -3.9703 -0.9225 27 1 2.7264 -3.2898 -1.7595 28 1 4.6252 -3.2371 -6.6184 29 1 5.5618 -5.4930 -6.3522 30 1 1.6729 -4.5386 0.9945 31 1 2.6085 -3.1764 1.8133 32 1 0.4450 -1.8968 2.1578 33 1 -0.4915 -3.2583 1.3391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848024882.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:46 Heat of formation + Delta-G solvation = -60.218254 kcal Electronic energy + Delta-G solvation = -21798.506112 eV Core-core repulsion = 18075.473938 eV Total energy + Delta-G solvation = -3723.032174 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.34850 -49.27986 -40.33945 -38.89773 -36.74677 -33.52326 -32.53483 -32.02430 -31.51540 -26.79589 -25.50640 -24.35123 -23.81779 -21.29312 -20.45703 -19.52326 -18.79728 -18.31450 -17.61714 -16.69701 -16.26052 -16.08770 -15.67538 -15.35656 -14.99116 -14.92855 -14.74001 -14.29541 -13.97904 -13.51852 -13.30552 -13.21218 -12.75836 -12.41307 -11.84414 -11.66415 -11.06120 -10.97635 -10.59287 -10.51908 -10.31629 -10.03714 -9.78395 -9.55285 -9.42147 -9.04304 -8.56090 -8.43251 -8.20417 -6.13126 -4.22328 0.31104 0.52897 2.67956 3.01463 3.03272 3.21623 3.30840 3.32637 3.49089 3.55761 4.09450 4.31068 4.46389 4.64655 5.01808 5.14999 5.21401 5.25349 5.32847 5.43070 5.94909 6.09921 6.27416 6.39168 6.46972 6.64831 6.75479 7.03998 7.06815 7.15292 7.34781 7.41519 7.76390 8.00576 8.27393 8.53506 8.79056 9.45233 10.94777 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018497 B = 0.005606 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.407902 B = 4993.090726 C = 5790.176040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.502 4.502 8 H 0.061 0.939 9 C 0.024 3.976 10 C 0.161 3.839 11 N -0.683 5.683 12 C 0.555 3.445 13 O -0.532 6.532 14 C -0.230 4.230 15 C 0.209 3.791 16 F -0.103 7.103 17 C -0.221 4.221 18 C 0.175 3.825 19 N -0.519 5.519 20 C 0.372 3.628 21 F -0.092 7.092 22 C -0.210 4.210 23 C -0.145 4.145 24 H 0.262 0.738 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.403 0.597 28 H 0.163 0.837 29 H 0.183 0.817 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.500 -7.538 -9.908 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.023 3.977 10 C 0.039 3.961 11 N -0.330 5.330 12 C 0.337 3.663 13 O -0.409 6.409 14 C -0.238 4.238 15 C 0.181 3.819 16 F -0.081 7.081 17 C -0.242 4.242 18 C 0.018 3.982 19 N -0.234 5.234 20 C 0.218 3.782 21 F -0.071 7.071 22 C -0.247 4.247 23 C -0.183 4.183 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.061 0.939 27 H 0.237 0.763 28 H 0.180 0.820 29 H 0.200 0.800 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.780 -8.343 -9.916 15.653 hybrid contribution 0.262 1.945 0.192 1.972 sum 9.042 -6.398 -9.724 14.740 Atomic orbital electron populations 1.69975 1.05908 1.26949 1.48084 1.24985 0.94807 0.98995 0.94174 0.86581 0.80188 0.83799 0.77723 1.19694 1.20963 1.20850 1.20369 0.92873 0.88552 1.52195 0.92121 1.19038 0.98933 0.94082 0.85614 1.21154 0.86939 0.97344 0.90701 1.45990 1.12126 1.58197 1.16680 1.17512 0.87314 0.79524 0.81990 1.90811 1.20902 1.55032 1.74173 1.20963 1.03400 0.95576 1.03825 1.17695 0.91242 0.79946 0.92978 1.91665 1.84446 1.37711 1.94247 1.22207 0.98716 0.99989 1.03275 1.22558 0.96182 0.87679 0.91741 1.67128 1.11811 1.37410 1.07063 1.17752 0.89648 0.83770 0.87068 1.91708 1.85979 1.66842 1.62537 1.23043 0.98757 0.95713 1.07234 1.22495 0.92314 1.01057 1.02434 0.92794 0.90429 0.93860 0.76273 0.81954 0.80033 0.91504 0.90240 0.89710 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.01 12.91 55.43 0.72 -23.29 16 2 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 3 Si 0.89 20.37 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.50 -12.78 8.63 -34.44 -0.30 -13.08 16 8 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 9 C 0.02 0.56 1.38 -155.66 -0.21 0.35 16 10 C 0.16 3.64 5.50 -4.04 -0.02 3.62 16 11 N -0.68 -13.55 5.47 -61.35 -0.34 -13.88 16 12 C 0.56 10.87 6.64 -12.47 -0.08 10.79 16 13 O -0.53 -12.23 17.11 5.29 0.09 -12.14 16 14 C -0.23 -3.59 5.66 -104.71 -0.59 -4.18 16 15 C 0.21 2.78 7.37 -38.61 -0.28 2.50 16 16 F -0.10 -1.56 16.93 2.25 0.04 -1.52 16 17 C -0.22 -1.95 10.09 -39.43 -0.40 -2.35 16 18 C 0.17 1.46 11.16 -17.52 -0.20 1.26 16 19 N -0.52 -6.32 10.36 -13.25 -0.14 -6.46 16 20 C 0.37 5.39 8.42 -16.89 -0.14 5.25 16 21 F -0.09 -1.44 16.86 2.25 0.04 -1.40 16 22 C -0.21 -4.32 9.96 -26.69 -0.27 -4.59 16 23 C -0.14 -3.26 9.42 -26.69 -0.25 -3.52 16 24 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 25 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 26 H 0.04 0.96 8.09 -51.93 -0.42 0.54 16 27 H 0.40 7.37 8.35 -40.82 -0.34 7.03 16 28 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 29 H 0.18 0.70 8.06 -52.48 -0.42 0.28 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 33 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 LS Contribution 309.52 15.07 4.66 4.66 Total: -1.00 -30.47 309.52 -6.06 -36.53 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.27 Total: 4.25 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.84 Total: -2.09 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.24 Total: -43.63 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.08 Total: -2.93 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.47 -6.06 -36.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848024882.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.692 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds