Wall clock time and date at job start Tue Mar 31 2020 05:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48501 * 109.46869 * 269.99971 * 3 2 1 5 5 H 1.48504 * 109.46954 * 29.99845 * 3 2 1 6 6 H 1.48494 * 109.47063 * 150.00094 * 3 2 1 7 7 C 1.38655 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99615 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00332 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00240 * 185.05591 * 9 7 2 11 11 C 1.38888 * 120.06969 * 354.46688 * 10 9 7 12 12 C 1.38097 * 119.93011 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.06932 * 0.02569 * 12 11 10 14 14 C 1.50706 * 119.92770 * 179.97438 * 13 12 11 15 15 O 1.45196 * 109.47037 * 90.00005 * 14 13 12 16 16 C 1.34231 * 117.00047 * 179.97438 * 15 14 13 17 17 O 1.20821 * 119.99728 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00087 * 179.97438 * 16 15 14 19 19 C 1.53006 * 109.46884 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.46992 * 180.02562 * 19 18 16 21 21 F 1.39892 * 109.46978 * 180.02562 * 20 19 18 22 22 C 1.38294 * 120.14045 * 0.24714 * 13 12 11 23 23 C 1.38099 * 120.07055 * 359.45654 * 22 13 12 24 24 H 0.97003 * 120.00423 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.03290 * 359.97438 * 11 10 9 26 26 H 1.07997 * 119.96090 * 180.02562 * 12 11 10 27 27 H 1.08996 * 109.46931 * 329.99630 * 14 13 12 28 28 H 1.09002 * 109.46697 * 210.00055 * 14 13 12 29 29 H 1.09001 * 109.47132 * 300.00148 * 18 16 15 30 30 H 1.08996 * 109.46999 * 60.00201 * 18 16 15 31 31 H 1.09001 * 109.47150 * 299.99884 * 19 18 16 32 32 H 1.08996 * 109.47345 * 60.00160 * 19 18 16 33 33 H 1.09001 * 109.46840 * 299.99782 * 20 19 18 34 34 H 1.09000 * 109.47078 * 59.99285 * 20 19 18 35 35 H 1.08001 * 119.96614 * 179.70067 * 22 13 12 36 36 H 1.08000 * 120.04137 * 180.26759 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 3.4572 -3.4395 0.0921 12 6 4.2024 -4.5972 0.1996 13 6 3.5687 -5.8205 0.3201 14 6 4.3850 -7.0820 0.4366 15 8 4.6543 -7.3565 1.8368 16 6 5.3756 -8.4539 2.1148 17 8 5.7693 -9.1613 1.2179 18 6 5.6953 -8.8030 3.5456 19 6 6.5224 -10.0896 3.5840 20 6 6.8464 -10.4443 5.0366 21 9 7.6032 -11.6204 5.0717 22 6 2.1875 -5.8893 0.3281 23 6 1.4366 -4.7347 0.2271 24 1 -0.4851 0.8400 0.0004 25 1 3.9527 -2.4846 -0.0032 26 1 5.2812 -4.5471 0.1896 27 1 5.3272 -6.9555 -0.0966 28 1 3.8310 -7.9146 0.0031 29 1 6.2647 -7.9916 3.9989 30 1 4.7681 -8.9499 4.0995 31 1 5.9533 -10.9011 3.1305 32 1 7.4495 -9.9422 3.0301 33 1 7.4154 -9.6329 5.4905 34 1 5.9191 -10.5917 5.5901 35 1 1.6955 -6.8465 0.4175 36 1 0.3580 -4.7885 0.2378 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850192860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:50 Heat of formation + Delta-G solvation = -155.100641 kcal Electronic energy + Delta-G solvation = -20462.030523 eV Core-core repulsion = 16826.051494 eV Total energy + Delta-G solvation = -3635.979029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.95421 -40.50939 -39.11647 -37.15908 -36.13727 -34.46820 -32.46993 -30.67819 -30.27570 -28.09517 -26.00261 -24.85067 -22.79241 -22.09321 -20.81309 -20.58623 -18.11602 -17.76436 -17.22836 -17.05159 -16.63798 -16.24788 -15.78930 -15.12896 -14.83691 -14.62546 -14.32152 -14.16575 -13.73883 -13.61370 -13.04160 -12.82703 -12.80544 -12.42683 -12.23163 -11.90630 -11.75302 -11.50106 -11.40244 -11.07640 -11.06983 -10.85659 -10.75270 -10.53011 -10.48868 -10.46767 -9.44295 -8.93579 -8.30286 -7.36575 -6.55085 -4.13794 1.90594 2.11743 2.13519 2.85617 3.07888 3.08978 3.13403 3.88759 4.22577 4.27195 4.33511 4.50427 4.63783 4.81402 4.88996 5.00710 5.12298 5.12470 5.16681 5.21291 5.27848 5.50259 5.59437 5.61840 5.73437 5.77847 6.09798 6.29957 6.48778 6.56349 6.77550 6.93827 7.11784 7.23588 7.32522 7.67986 7.72655 7.89585 8.90090 9.57759 10.62304 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.033476 B = 0.002521 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.226848 B =11103.016358 C =11441.460144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.171 6.171 10 C 0.163 3.837 11 C -0.238 4.238 12 C -0.045 4.045 13 C -0.206 4.206 14 C 0.130 3.870 15 O -0.351 6.351 16 C 0.458 3.542 17 O -0.516 6.516 18 C -0.114 4.114 19 C -0.144 4.144 20 C 0.062 3.938 21 F -0.218 7.218 22 C -0.049 4.049 23 C -0.196 4.196 24 H 0.272 0.728 25 H 0.130 0.870 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.336 -14.204 7.397 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.108 3.892 11 C -0.257 4.257 12 C -0.063 4.063 13 C -0.207 4.207 14 C 0.057 3.943 15 O -0.267 6.267 16 C 0.301 3.699 17 O -0.405 6.405 18 C -0.152 4.152 19 C -0.182 4.182 20 C 0.008 3.992 21 F -0.199 7.199 22 C -0.067 4.067 23 C -0.215 4.215 24 H 0.082 0.918 25 H 0.147 0.853 26 H 0.127 0.873 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.131 0.869 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.999 -14.173 7.071 18.731 hybrid contribution 0.505 0.812 -0.173 0.971 sum 10.504 -13.362 6.898 18.343 Atomic orbital electron populations 1.70034 1.06024 1.27928 1.45262 1.25333 0.95878 0.98973 0.96296 0.85680 0.78942 0.79838 0.78807 1.19778 1.20156 1.19104 1.21373 0.91909 0.80692 1.53000 0.88862 1.83976 1.34530 1.11572 1.77291 1.19445 0.90321 0.88049 0.91385 1.21145 0.93779 0.98872 1.11913 1.20615 0.98409 0.91519 0.95764 1.18862 0.93353 0.92856 1.15598 1.21713 0.98962 0.95873 0.77729 1.86654 1.65329 1.42577 1.32172 1.23540 0.75164 0.78770 0.92406 1.90663 1.50354 1.50636 1.48827 1.21245 1.03089 0.99367 0.91513 1.21999 1.02042 0.97479 0.96665 1.21966 0.95579 0.84135 0.97564 1.92776 1.78569 1.50910 1.97617 1.20504 0.92607 0.96975 0.96609 1.20200 0.99715 0.90134 1.11466 0.91834 0.85251 0.87341 0.91219 0.91175 0.87277 0.87266 0.89747 0.89745 0.90431 0.90415 0.86898 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.54 13.67 55.48 0.76 -23.79 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.92 29.55 -169.99 -5.02 14.89 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.39 -10.69 9.49 30.89 0.29 -10.40 16 8 H 0.09 2.33 5.20 -52.48 -0.27 2.06 16 9 O -0.17 -4.75 9.76 0.06 0.00 -4.75 16 10 C 0.16 3.82 6.65 -39.10 -0.26 3.56 16 11 C -0.24 -5.00 9.17 -39.39 -0.36 -5.37 16 12 C -0.04 -0.80 9.69 -39.61 -0.38 -1.19 16 13 C -0.21 -3.50 5.52 -104.58 -0.58 -4.08 16 14 C 0.13 1.88 5.59 36.01 0.20 2.08 16 15 O -0.35 -4.90 10.20 -39.26 -0.40 -5.30 16 16 C 0.46 5.51 7.96 36.00 0.29 5.80 16 17 O -0.52 -7.57 15.73 -18.75 -0.29 -7.86 16 18 C -0.11 -0.84 5.81 -27.88 -0.16 -1.00 16 19 C -0.14 -1.05 4.96 -26.73 -0.13 -1.19 16 20 C 0.06 0.37 7.55 37.16 0.28 0.65 16 21 F -0.22 -2.01 17.36 2.25 0.04 -1.98 16 22 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 23 C -0.20 -4.01 9.99 -39.39 -0.39 -4.40 16 24 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 26 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 28 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 29 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.08 0.71 8.10 -51.93 -0.42 0.28 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 323.40 15.07 4.87 4.87 Total: -1.00 -31.73 323.40 -6.08 -37.81 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.34 Total: 1.87 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -1.69 Total: -15.78 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.76 Total: -23.79 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.69 Total: -17.91 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.73 -6.08 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850192860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.287 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds