Wall clock time and date at job start Tue Mar 31 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08998 * 109.50839 * 300.28341 * 9 7 2 11 11 C 1.53124 * 109.50158 * 60.36214 * 9 7 2 12 12 C 1.53121 * 109.16108 * 177.59378 * 11 9 7 13 13 C 1.53034 * 109.27653 * 302.34293 * 12 11 9 14 14 N 1.46845 * 109.52662 * 59.18031 * 13 12 11 15 15 C 1.38539 * 111.00323 * 174.15796 * 14 13 12 16 16 C 1.39582 * 120.47689 * 303.95460 * 15 14 13 17 17 C 1.38293 * 118.47653 * 179.97438 * 16 15 14 18 18 Cl 1.73605 * 120.37076 * 179.97438 * 17 16 15 19 19 N 1.32619 * 119.26073 * 0.02562 * 17 16 15 20 20 C 1.32460 * 120.91149 * 359.97438 * 19 17 16 21 21 N 1.38399 * 119.17116 * 179.97438 * 20 19 17 22 22 N 1.32468 * 121.65683 * 359.71904 * 20 19 17 23 23 C 1.46852 * 111.23290 * 298.27981 * 14 13 12 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.51694 * 297.49548 * 11 9 7 26 26 H 1.08997 * 109.52437 * 57.62357 * 11 9 7 27 27 H 1.09000 * 109.50221 * 62.28486 * 12 11 9 28 28 H 1.09001 * 109.50111 * 182.39859 * 12 11 9 29 29 H 1.09003 * 109.46303 * 179.19730 * 13 12 11 30 30 H 1.09004 * 109.46614 * 299.16171 * 13 12 11 31 31 H 1.07998 * 120.76698 * 0.02562 * 16 15 14 32 32 H 0.96998 * 120.00179 * 359.97438 * 21 20 19 33 33 H 0.97004 * 119.99318 * 180.02562 * 21 20 19 34 34 H 1.09002 * 109.42321 * 301.68140 * 23 14 13 35 35 H 1.08995 * 109.49687 * 181.71855 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6243 -2.5534 0.8954 11 6 0.3720 -2.5875 -1.2452 12 6 -0.3436 -3.9411 -1.2619 13 6 0.6965 -5.0629 -1.2230 14 7 1.5114 -4.9348 -0.0081 15 6 2.3766 -6.0086 0.1250 16 6 1.8860 -7.3153 0.1403 17 6 2.7866 -8.3562 0.2747 18 17 2.2302 -10.0005 0.3004 19 7 4.0800 -8.0842 0.3847 20 6 4.5163 -6.8337 0.3668 21 7 5.8737 -6.5910 0.4849 22 7 3.6865 -5.8097 0.2339 23 6 2.2450 -3.6628 0.0085 24 1 -0.4850 0.8400 0.0004 25 1 -0.3660 -1.7854 -1.2290 26 1 0.9940 -2.4922 -2.1352 27 1 -0.9954 -4.0188 -0.3917 28 1 -0.9381 -4.0272 -2.1714 29 1 0.1898 -6.0280 -1.2203 30 1 1.3393 -4.9929 -2.1005 31 1 0.8276 -7.5092 0.0486 32 1 6.4924 -7.3320 0.5795 33 1 6.2062 -5.6798 0.4736 34 1 2.8811 -3.5996 -0.8744 35 1 2.8625 -3.6106 0.9052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853762334.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:03 Heat of formation + Delta-G solvation = 50.326723 kcal Electronic energy + Delta-G solvation = -19897.417186 eV Core-core repulsion = 16763.268034 eV Total energy + Delta-G solvation = -3134.149152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.04461 -38.51162 -36.91698 -35.03033 -34.01593 -32.79589 -31.15133 -30.35320 -29.41634 -25.19214 -24.72054 -23.48115 -22.08308 -21.36512 -18.98211 -18.11773 -17.92323 -16.35805 -15.90414 -15.67218 -15.35168 -14.99976 -14.73499 -14.38860 -13.97608 -13.69944 -13.08708 -12.60919 -12.52234 -12.48540 -11.97109 -11.49659 -11.05235 -11.01409 -10.93611 -10.72521 -10.68221 -10.26063 -10.23231 -9.95732 -9.58785 -9.26170 -9.17823 -8.81379 -8.62322 -8.35264 -7.97732 -6.03185 -4.09070 1.08966 1.27901 1.57792 3.17554 3.27681 3.36088 3.39757 3.69406 3.95328 4.40748 4.68234 4.89406 5.22158 5.27842 5.37699 5.49487 5.51527 5.75033 5.87599 6.08088 6.32364 6.38764 6.48597 6.62262 6.69767 6.83920 6.96571 7.14151 7.20596 7.26167 7.47911 7.54777 7.70442 7.96326 8.07293 8.37312 8.43772 8.94466 9.55754 11.03262 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.026819 B = 0.004339 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.793334 B = 6452.042555 C = 7336.519367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.050 3.950 10 H 0.035 0.965 11 C -0.115 4.115 12 C -0.120 4.120 13 C 0.068 3.932 14 N -0.467 5.467 15 C 0.422 3.578 16 C -0.289 4.289 17 C 0.276 3.724 18 Cl -0.026 7.026 19 N -0.600 5.600 20 C 0.606 3.394 21 N -0.819 5.819 22 N -0.596 5.596 23 C 0.077 3.923 24 H 0.260 0.740 25 H 0.095 0.905 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.152 0.848 32 H 0.413 0.587 33 H 0.417 0.583 34 H 0.042 0.958 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.418 -14.865 -1.538 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.031 3.969 10 H 0.053 0.947 11 C -0.153 4.153 12 C -0.158 4.158 13 C -0.057 4.057 14 N -0.182 5.182 15 C 0.178 3.822 16 C -0.320 4.320 17 C 0.105 3.895 18 Cl 0.002 6.998 19 N -0.329 5.329 20 C 0.245 3.755 21 N -0.368 5.368 22 N -0.326 5.326 23 C -0.048 4.048 24 H 0.070 0.930 25 H 0.114 0.886 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.170 0.830 32 H 0.244 0.756 33 H 0.249 0.751 34 H 0.060 0.940 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.778 -14.633 -1.090 15.431 hybrid contribution 0.422 0.604 -0.436 0.856 sum 5.200 -14.028 -1.526 15.039 Atomic orbital electron populations 1.69885 1.05853 1.26356 1.50632 1.24920 0.94839 0.99014 0.95004 0.86545 0.80161 0.83784 0.77554 1.19797 1.21072 1.21030 1.21109 0.92981 0.90273 1.50771 0.92532 1.18785 0.92617 0.90514 0.94974 0.94669 1.21729 1.00248 0.94625 0.98688 1.21755 0.96862 0.95947 1.01192 1.22276 0.95337 1.00523 0.87548 1.58842 1.20798 1.02709 1.35855 1.19931 0.86561 0.90391 0.85323 1.21684 1.02032 0.91012 1.17224 1.21183 0.88959 0.87084 0.92291 1.98404 1.87350 1.17892 1.96141 1.67042 1.16223 1.21848 1.27783 1.18799 0.87274 0.83019 0.86410 1.41702 1.01812 1.12326 1.80990 1.67979 1.03378 1.34243 1.27018 1.22384 0.96069 0.84992 1.01333 0.93033 0.88624 0.94683 0.91525 0.92333 0.90818 0.93783 0.83030 0.75621 0.75121 0.93988 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 11.36 55.43 0.63 -23.93 16 2 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -13.64 8.56 -34.44 -0.29 -13.94 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.20 2.26 -91.69 -0.21 0.99 16 10 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.55 5.03 -26.60 -0.13 -2.68 16 12 C -0.12 -2.11 6.09 -26.65 -0.16 -2.28 16 13 C 0.07 1.11 5.26 -3.84 -0.02 1.09 16 14 N -0.47 -8.55 4.68 -173.08 -0.81 -9.36 16 15 C 0.42 7.25 6.40 -154.84 -0.99 6.26 16 16 C -0.29 -4.29 9.06 -39.06 -0.35 -4.64 16 17 C 0.28 4.00 7.32 -17.19 -0.13 3.87 16 18 Cl -0.03 -0.31 29.15 -51.86 -1.51 -1.82 16 19 N -0.60 -9.09 10.45 -11.11 -0.12 -9.20 16 20 C 0.61 9.20 8.67 -322.89 -2.80 6.40 16 21 N -0.82 -9.00 9.07 29.75 0.27 -8.73 16 22 N -0.60 -10.28 8.87 -13.18 -0.12 -10.40 16 23 C 0.08 1.63 3.89 -3.83 -0.01 1.61 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.10 2.39 6.17 -51.93 -0.32 2.07 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.99 6.75 -51.93 -0.35 0.64 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.15 1.94 7.23 -52.49 -0.38 1.56 16 32 H 0.41 3.52 8.94 -40.82 -0.37 3.16 16 33 H 0.42 4.07 8.94 -40.82 -0.37 3.71 16 34 H 0.04 0.91 8.12 -51.93 -0.42 0.48 16 35 H 0.07 1.64 7.74 -51.93 -0.40 1.23 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -28.68 302.93 -11.57 -40.25 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.26 Total: 4.56 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -5.20 Total: -1.70 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.14 Total: -61.63 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.51 Total: -1.82 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.68 -11.57 -40.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853762334.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.574 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds