Wall clock time and date at job start Tue Mar 31 2020 05:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99875 * 2 1 4 4 H 1.48502 * 109.47255 * 240.00011 * 3 2 1 5 5 H 1.48498 * 109.47508 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47076 * 120.00097 * 3 2 1 7 7 C 1.37875 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99817 * 173.69801 * 7 2 1 9 9 C 1.50699 * 120.00103 * 353.68934 * 7 2 1 10 10 C 1.52997 * 115.54738 * 85.65950 * 9 7 2 11 11 S 1.81400 * 109.47131 * 65.33622 * 10 9 7 12 12 C 1.81399 * 103.00163 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47285 * 179.97438 * 12 11 10 14 14 H 1.09004 * 110.38203 * 304.06827 * 13 12 11 15 15 C 1.54728 * 110.53126 * 181.60998 * 13 12 11 16 16 C 1.53885 * 101.88921 * 214.82244 * 15 13 12 17 17 C 1.52334 * 121.20368 * 231.07768 * 16 15 13 18 18 C 1.52462 * 121.25548 * 159.10597 * 16 15 13 19 19 C 1.50698 * 105.55038 * 15.04206 * 16 15 13 20 20 O 1.20829 * 125.26421 * 182.39747 * 19 16 15 21 21 O 1.34300 * 109.47969 * 2.36859 * 19 16 15 22 22 C 1.52996 * 117.50197 * 231.33251 * 9 7 2 23 23 C 1.52997 * 117.50110 * 299.99376 * 9 7 2 24 24 H 0.96999 * 119.99847 * 354.97787 * 1 2 3 25 25 H 1.08995 * 109.47528 * 305.33349 * 10 9 7 26 26 H 1.09006 * 109.47018 * 185.33439 * 10 9 7 27 27 H 1.09007 * 109.46793 * 60.00068 * 12 11 10 28 28 H 1.08998 * 109.47638 * 300.00192 * 12 11 10 29 29 H 1.08998 * 110.94648 * 96.67186 * 15 13 12 30 30 H 1.09003 * 110.94428 * 332.97056 * 15 13 12 31 31 H 1.09001 * 117.51408 * 356.78181 * 17 16 15 32 32 H 1.08994 * 117.51713 * 141.86208 * 17 16 15 33 33 H 1.09000 * 117.54536 * 3.16954 * 18 16 15 34 34 H 1.09004 * 117.50887 * 218.01982 * 18 16 15 35 35 H 1.08998 * 117.50035 * 215.00343 * 22 9 7 36 36 H 1.09003 * 117.50138 * 0.02562 * 22 9 7 37 37 H 1.08999 * 117.49976 * 359.97311 * 23 9 7 38 38 H 1.08997 * 117.50535 * 144.97101 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0796 -1.1968 -0.1032 9 6 1.2579 -2.4952 0.1423 10 6 0.7097 -3.0876 -1.1575 11 16 2.0897 -3.5544 -2.2384 12 6 1.2531 -4.2251 -3.7016 13 6 2.2977 -4.6710 -4.7268 14 1 2.9636 -3.8442 -4.9743 15 6 1.6095 -5.2108 -6.0031 16 6 2.5696 -6.3353 -6.4295 17 6 3.1066 -6.4171 -7.8527 18 6 2.1093 -7.4632 -7.3463 19 6 3.4482 -6.5919 -5.2324 20 8 4.3603 -7.3835 -5.1933 21 8 3.0613 -5.8043 -4.2157 22 6 1.7408 -3.4727 1.2157 23 6 0.4340 -2.7010 1.4150 24 1 -0.4850 0.8368 0.0735 25 1 0.0885 -2.3469 -1.6608 26 1 0.1113 -3.9700 -0.9306 27 1 0.6180 -3.4561 -4.1414 28 1 0.6413 -5.0791 -3.4109 29 1 1.5492 -4.4383 -6.7697 30 1 0.6208 -5.6085 -5.7741 31 1 2.7439 -5.6818 -8.5709 32 1 4.1425 -6.7303 -7.9828 33 1 1.0907 -7.4158 -7.7315 34 1 2.4895 -8.4643 -7.1428 35 1 1.6680 -4.5378 0.9959 36 1 2.5983 -3.1745 1.8189 37 1 0.4323 -1.8953 2.1492 38 1 -0.4987 -3.2580 1.3263 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853772207.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:50 Heat of formation + Delta-G solvation = -34.833442 kcal Electronic energy + Delta-G solvation = -19423.079420 eV Core-core repulsion = 16358.528744 eV Total energy + Delta-G solvation = -3064.550676 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.27763 -37.67118 -36.97835 -36.56034 -32.52220 -31.93799 -28.50121 -27.63281 -25.34868 -24.30082 -23.00096 -22.09319 -21.10267 -20.08435 -19.17514 -17.30798 -16.86154 -16.37012 -15.84534 -15.50914 -15.12931 -14.62897 -14.44586 -13.90147 -13.66169 -13.46598 -13.12731 -13.07858 -12.89869 -12.62284 -12.03344 -11.92743 -11.80005 -11.38591 -11.01871 -10.90145 -10.85947 -10.80677 -10.47441 -10.44143 -10.20856 -10.15674 -9.64675 -9.29631 -8.82003 -8.43965 -8.01536 -6.82111 -6.05203 -4.10292 1.81460 2.22781 3.05282 3.32344 3.36104 3.38029 3.40462 3.43711 3.62560 4.05673 4.11884 4.36887 4.41879 4.72851 4.75252 4.90713 5.14440 5.17528 5.23913 5.30140 5.39350 5.43163 5.45908 5.52843 5.65970 5.76571 5.96167 6.20944 6.39424 6.53267 6.71804 6.74483 6.81065 7.06807 7.38999 7.40143 7.48933 7.88258 8.39908 8.91710 9.55858 11.03873 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.026260 B = 0.003737 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.998591 B = 7490.637156 C = 7854.786837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.072 3.928 3 Si 0.888 3.112 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.485 4.485 8 H 0.062 0.938 9 C 0.055 3.945 10 C -0.029 4.029 11 S -0.225 6.225 12 C -0.108 4.108 13 C 0.108 3.892 14 H 0.107 0.893 15 C -0.111 4.111 16 C -0.222 4.222 17 C -0.133 4.133 18 C -0.132 4.132 19 C 0.514 3.486 20 O -0.458 6.458 21 O -0.321 6.321 22 C -0.204 4.204 23 C -0.148 4.148 24 H 0.260 0.740 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 -10.048 -14.793 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.522 4.522 8 H 0.080 0.920 9 C 0.053 3.947 10 C -0.177 4.177 11 S 0.003 5.997 12 C -0.257 4.257 13 C 0.052 3.948 14 H 0.124 0.876 15 C -0.150 4.150 16 C -0.224 4.224 17 C -0.170 4.170 18 C -0.169 4.169 19 C 0.354 3.646 20 O -0.342 6.342 21 O -0.237 6.237 22 C -0.242 4.242 23 C -0.188 4.188 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.633 -10.200 -14.433 17.685 hybrid contribution -1.142 0.924 -0.138 1.475 sum -0.509 -9.276 -14.571 17.281 Atomic orbital electron populations 1.70002 1.05858 1.26887 1.49228 1.24935 0.94771 0.98842 0.94499 0.86716 0.79722 0.83134 0.78851 1.20010 1.21391 1.20255 1.20366 0.92941 0.88487 1.50430 0.91998 1.18425 0.98173 0.93923 0.84170 1.23124 0.95384 1.00374 0.98829 1.87192 1.17401 1.79364 1.15695 1.23480 0.99657 1.03762 0.98753 1.23404 0.92428 0.87013 0.91914 0.87566 1.22540 0.98569 0.96689 0.97175 1.22367 1.03010 1.03407 0.93581 1.22949 1.00441 1.01864 0.91732 1.22910 1.00474 0.94230 0.99259 1.21845 0.81165 0.78694 0.82891 1.90680 1.27366 1.34214 1.81917 1.87272 1.66518 1.35932 1.33941 1.23022 0.98361 0.95877 1.06909 1.22576 0.92232 1.01199 1.02815 0.93049 0.89807 0.93380 0.88191 0.89791 0.88187 0.88685 0.87238 0.87527 0.87240 0.87596 0.91360 0.90259 0.89802 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.27 12.90 55.43 0.71 -23.55 16 2 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 3 Si 0.89 20.94 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.48 -13.03 8.49 -34.44 -0.29 -13.32 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.05 1.33 1.34 -155.67 -0.21 1.12 16 10 C -0.03 -0.63 5.80 37.16 0.22 -0.41 16 11 S -0.23 -4.44 21.29 -107.50 -2.29 -6.73 16 12 C -0.11 -1.50 5.62 37.16 0.21 -1.29 16 13 C 0.11 1.32 3.52 -25.82 -0.09 1.23 16 14 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.11 -0.93 6.48 -25.36 -0.16 -1.09 16 16 C -0.22 -2.13 2.45 -155.82 -0.38 -2.51 16 17 C -0.13 -0.97 10.27 -27.00 -0.28 -1.24 16 18 C -0.13 -0.96 10.29 -26.93 -0.28 -1.24 16 19 C 0.51 7.32 8.34 36.00 0.30 7.62 16 20 O -0.46 -7.82 18.00 -18.39 -0.33 -8.15 16 21 O -0.32 -4.96 10.61 -39.08 -0.41 -5.38 16 22 C -0.20 -4.52 9.96 -26.70 -0.27 -4.79 16 23 C -0.15 -3.43 9.40 -26.70 -0.25 -3.68 16 24 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 25 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 26 H 0.05 0.96 8.09 -51.92 -0.42 0.54 16 27 H 0.10 1.23 8.14 -51.92 -0.42 0.81 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.10 0.62 8.13 -51.93 -0.42 0.19 16 30 H 0.09 0.70 7.93 -51.93 -0.41 0.29 16 31 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 37 H 0.08 2.06 8.14 -51.93 -0.42 1.63 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -30.67 339.01 -9.69 -40.35 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.87 Total: 0.19 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -1.58 Total: -17.76 kcal Atomic # 7 Polarization: -24.27 SS G_CDS: 0.71 Total: -23.55 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.75 Total: -13.53 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -2.29 Total: -6.73 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.67 -9.69 -40.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853772207.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.519 kcal (2) G-P(sol) polarization free energy of solvation -30.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds