Wall clock time and date at job start Tue Mar 31 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00150 * 2 1 4 4 H 1.48501 * 109.47031 * 240.00169 * 3 2 1 5 5 H 1.48499 * 109.47030 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47574 * 119.99806 * 3 2 1 7 7 C 1.37875 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00220 * 173.91815 * 7 2 1 9 9 C 1.50701 * 120.00218 * 353.91594 * 7 2 1 10 10 C 1.52998 * 115.55048 * 84.89182 * 9 7 2 11 11 S 1.81393 * 109.47399 * 39.93230 * 10 9 7 12 12 C 1.81397 * 103.00150 * 180.02562 * 11 10 9 13 13 C 1.53007 * 109.46929 * 180.02562 * 12 11 10 14 14 H 1.09005 * 110.47504 * 57.54808 * 13 12 11 15 15 C 1.54735 * 110.42431 * 179.97438 * 13 12 11 16 16 C 1.53882 * 101.92105 * 145.14950 * 15 13 12 17 17 C 1.52320 * 121.22323 * 200.91200 * 16 15 13 18 18 C 1.52323 * 121.20651 * 128.91287 * 16 15 13 19 19 C 1.50705 * 105.54860 * 344.93690 * 16 15 13 20 20 O 1.20823 * 125.25872 * 177.62059 * 19 16 15 21 21 O 1.34294 * 109.48100 * 357.63058 * 19 16 15 22 22 C 1.53009 * 117.51923 * 230.59029 * 9 7 2 23 23 C 1.52999 * 117.49930 * 299.21977 * 9 7 2 24 24 H 0.96998 * 119.99854 * 354.96106 * 1 2 3 25 25 H 1.09006 * 109.46757 * 279.92924 * 10 9 7 26 26 H 1.08995 * 109.47132 * 159.94018 * 10 9 7 27 27 H 1.08992 * 109.47236 * 59.99991 * 12 11 10 28 28 H 1.09005 * 109.46984 * 299.99857 * 12 11 10 29 29 H 1.08997 * 110.94271 * 26.98350 * 15 13 12 30 30 H 1.09000 * 110.94545 * 263.31937 * 15 13 12 31 31 H 1.08997 * 117.51705 * 356.82151 * 17 16 15 32 32 H 1.09003 * 117.51703 * 141.94437 * 17 16 15 33 33 H 1.09001 * 117.52206 * 218.08485 * 18 16 15 34 34 H 1.08999 * 117.51920 * 3.16549 * 18 16 15 35 35 H 1.08994 * 117.49562 * 214.97340 * 22 9 7 36 36 H 1.09002 * 117.49724 * 359.97438 * 22 9 7 37 37 H 1.09003 * 117.49987 * 359.97438 * 23 9 7 38 38 H 1.08999 * 117.50381 * 144.99476 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0800 -1.1967 -0.0996 9 6 1.2574 -2.4956 0.1372 10 6 0.6979 -3.0761 -1.1631 11 16 1.9034 -2.8414 -2.4981 12 6 1.0734 -3.5801 -3.9319 13 6 1.9766 -3.4612 -5.1612 14 1 2.9371 -3.9423 -4.9766 15 6 1.2893 -4.0860 -6.3988 16 6 1.7759 -3.1650 -7.5314 17 6 1.0232 -3.0727 -8.8525 18 6 2.4032 -3.7345 -8.7973 19 6 2.3345 -1.9438 -6.8473 20 8 2.8518 -1.0062 -7.4069 21 8 2.1686 -2.0590 -5.5197 22 6 1.7471 -3.4830 1.1985 23 6 0.4437 -2.7113 1.4148 24 1 -0.4850 0.8368 0.0738 25 1 -0.2311 -2.5661 -1.4185 26 1 0.5037 -4.1405 -1.0318 27 1 0.1353 -3.0573 -4.1179 28 1 0.8695 -4.6321 -3.7316 29 1 0.2042 -4.0463 -6.3033 30 1 1.6274 -5.1101 -6.5568 31 1 0.1582 -3.7223 -8.9856 32 1 0.9532 -2.0928 -9.3248 33 1 3.2407 -3.1899 -9.2333 34 1 2.4463 -4.8193 -8.8938 35 1 1.6707 -4.5460 0.9703 36 1 2.6102 -3.1914 1.7971 37 1 0.4492 -1.9120 2.1560 38 1 -0.4902 -3.2667 1.3291 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853772208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:52 Heat of formation + Delta-G solvation = -32.655905 kcal Electronic energy + Delta-G solvation = -19609.090276 eV Core-core repulsion = 16544.634026 eV Total energy + Delta-G solvation = -3064.456251 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18249 -37.56480 -36.91185 -36.56136 -32.44046 -31.88495 -28.41427 -27.63339 -25.31653 -24.20231 -22.95217 -22.01284 -21.12967 -19.99752 -19.15482 -17.22667 -16.75915 -16.34442 -15.76889 -15.44568 -15.03146 -14.57489 -14.34185 -13.81472 -13.49378 -13.40844 -13.29565 -12.97713 -12.87264 -12.34571 -12.14108 -11.91454 -11.77728 -11.32811 -10.94429 -10.83169 -10.75090 -10.71491 -10.45766 -10.37804 -10.15156 -10.09816 -9.63357 -9.16439 -8.76318 -8.38321 -8.01402 -6.64946 -5.99378 -4.03331 1.91457 2.35578 3.16032 3.40190 3.43835 3.44339 3.49097 3.56711 3.69800 4.12333 4.18680 4.42220 4.49768 4.80553 4.81257 4.96599 5.19414 5.21703 5.28478 5.33971 5.35711 5.48455 5.51205 5.55074 5.71084 5.86906 5.97242 6.16327 6.40760 6.48615 6.70956 6.81942 6.83873 7.04667 7.36170 7.47554 7.49733 7.93633 8.41043 8.95999 9.62496 11.09821 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.004546 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.708884 B = 6158.345392 C = 7088.657133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.079 3.921 3 Si 0.886 3.114 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.483 4.483 8 H 0.062 0.938 9 C 0.056 3.944 10 C -0.035 4.035 11 S -0.193 6.193 12 C -0.123 4.123 13 C 0.110 3.890 14 H 0.103 0.897 15 C -0.111 4.111 16 C -0.221 4.221 17 C -0.132 4.132 18 C -0.134 4.134 19 C 0.513 3.487 20 O -0.457 6.457 21 O -0.315 6.315 22 C -0.208 4.208 23 C -0.152 4.152 24 H 0.260 0.740 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.287 -11.954 -13.906 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.124 4.124 3 Si 0.713 3.287 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.522 4.522 8 H 0.080 0.920 9 C 0.055 3.945 10 C -0.183 4.183 11 S 0.037 5.963 12 C -0.271 4.271 13 C 0.054 3.946 14 H 0.121 0.879 15 C -0.150 4.150 16 C -0.223 4.223 17 C -0.169 4.169 18 C -0.171 4.171 19 C 0.352 3.648 20 O -0.341 6.341 21 O -0.231 6.231 22 C -0.245 4.245 23 C -0.191 4.191 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.786 -10.745 -14.036 17.694 hybrid contribution -1.034 0.246 0.100 1.067 sum -0.247 -10.499 -13.936 17.450 Atomic orbital electron populations 1.69989 1.05929 1.26910 1.48666 1.24866 0.94698 0.98799 0.94062 0.86738 0.79872 0.83187 0.78858 1.19705 1.21371 1.20354 1.20262 0.92836 0.88403 1.50715 0.91996 1.18449 0.97855 0.94001 0.84199 1.23032 0.99003 0.99413 0.96883 1.87452 1.28394 1.78509 1.01976 1.23574 1.01934 1.04128 0.97483 1.23354 0.99785 0.77870 0.93569 0.87881 1.22545 1.02144 0.99038 0.91268 1.22358 1.08830 0.99040 0.92072 1.22881 0.95827 1.03486 0.94707 1.22935 0.97373 1.01085 0.95661 1.21852 0.74912 0.85919 0.82076 1.90676 1.39578 1.36218 1.67666 1.87350 1.82862 1.29249 1.23643 1.23070 0.98528 0.95513 1.07367 1.22563 0.92166 1.01244 1.03151 0.93064 0.90383 0.93577 0.89623 0.88977 0.88721 0.88385 0.87286 0.87587 0.87556 0.87323 0.91676 0.90248 0.89823 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.87 12.93 55.43 0.72 -24.15 16 2 C 0.08 2.20 5.39 -17.82 -0.10 2.10 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.48 -13.16 7.55 -34.44 -0.26 -13.42 16 8 H 0.06 1.74 7.82 -52.48 -0.41 1.33 16 9 C 0.06 1.37 1.65 -155.66 -0.26 1.11 16 10 C -0.03 -0.76 6.05 37.16 0.22 -0.53 16 11 S -0.19 -3.96 20.41 -107.50 -2.19 -6.15 16 12 C -0.12 -1.79 5.62 37.16 0.21 -1.58 16 13 C 0.11 1.42 3.55 -25.81 -0.09 1.33 16 14 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.11 -0.99 6.48 -25.36 -0.16 -1.15 16 16 C -0.22 -2.31 2.44 -155.89 -0.38 -2.69 16 17 C -0.13 -1.07 10.28 -27.01 -0.28 -1.35 16 18 C -0.13 -1.04 10.27 -27.00 -0.28 -1.32 16 19 C 0.51 8.02 8.34 36.01 0.30 8.32 16 20 O -0.46 -8.51 18.00 -18.38 -0.33 -8.84 16 21 O -0.32 -5.44 10.58 -39.06 -0.41 -5.85 16 22 C -0.21 -4.45 9.88 -26.72 -0.26 -4.71 16 23 C -0.15 -3.47 9.46 -26.73 -0.25 -3.73 16 24 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 25 H 0.08 1.83 8.14 -51.92 -0.42 1.41 16 26 H 0.05 0.88 7.95 -51.93 -0.41 0.46 16 27 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 29 H 0.09 0.77 7.93 -51.93 -0.41 0.36 16 30 H 0.10 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 36 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 37 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 337.53 15.07 5.09 5.09 Total: -1.00 -31.68 337.53 -9.61 -41.28 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -5.86 Total: -0.66 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -1.59 Total: -17.62 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.72 Total: -24.15 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.74 Total: -14.69 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: -3.96 SS G_CDS: -2.19 Total: -6.15 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.68 -9.61 -41.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853772208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.628 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds