Wall clock time and date at job start Tue Mar 31 2020 05:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50696 * 119.99810 * 2 1 4 4 C 1.52996 * 109.47217 * 295.00033 * 3 2 1 5 5 C 1.53006 * 109.47288 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47447 * 179.97438 * 5 4 3 7 7 H 1.08007 * 119.99929 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00250 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00267 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99778 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47687 * 89.99932 * 10 8 6 12 12 H 1.48502 * 109.46929 * 210.00077 * 10 8 6 13 13 H 1.48498 * 109.47208 * 329.99519 * 10 8 6 14 14 N 1.28008 * 119.99851 * 180.02562 * 2 1 3 15 15 N 1.40105 * 120.00096 * 359.97438 * 14 2 1 16 16 C 1.38551 * 119.99633 * 179.72529 * 15 14 2 17 17 N 1.32492 * 119.20707 * 359.72865 * 16 15 14 18 18 C 1.32272 * 120.75405 * 179.75879 * 17 16 15 19 19 C 1.38720 * 119.17868 * 0.50652 * 18 17 16 20 20 Cl 1.73601 * 120.72729 * 179.72960 * 19 18 17 21 21 C 1.38717 * 118.53494 * 359.74657 * 19 18 17 22 22 N 1.32265 * 119.18334 * 0.02562 * 21 19 18 23 23 H 1.08999 * 109.47368 * 270.00180 * 1 2 3 24 24 H 1.09007 * 109.47308 * 30.00240 * 1 2 3 25 25 H 1.09003 * 109.47268 * 149.99563 * 1 2 3 26 26 H 1.09000 * 109.47262 * 55.00206 * 3 2 1 27 27 H 1.09007 * 109.46681 * 174.99756 * 3 2 1 28 28 H 1.09003 * 109.47064 * 299.99470 * 4 3 2 29 29 H 1.08997 * 109.47474 * 60.00044 * 4 3 2 30 30 H 1.09000 * 109.46791 * 299.99928 * 5 4 3 31 31 H 1.08997 * 109.47262 * 59.99381 * 5 4 3 32 32 H 0.97002 * 120.00194 * 180.02562 * 9 8 6 33 33 H 0.96996 * 120.00240 * 0.02562 * 15 14 2 34 34 H 1.07996 * 120.40391 * 180.25646 * 18 17 16 35 35 H 1.08004 * 120.40884 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 1.9875 2.0516 -1.3073 5 6 2.7530 3.3764 -1.3076 6 6 2.4846 4.1114 -2.5955 7 1 1.8335 3.6769 -3.3397 8 6 3.0702 5.3385 -2.8239 9 7 2.8365 5.9797 -3.9481 10 14 4.1969 6.0897 -1.5371 11 1 5.5943 5.6543 -1.7876 12 1 4.1184 7.5706 -1.6144 13 1 3.7735 5.6415 -0.1861 14 7 2.1470 -1.1086 -0.0005 15 7 1.4465 -2.3219 -0.0005 16 6 2.1393 -3.5218 -0.0068 17 7 3.4640 -3.5034 -0.0182 18 6 4.1562 -4.6305 -0.0197 19 6 3.4779 -5.8406 -0.0198 20 17 4.3460 -7.3440 -0.0288 21 6 2.0909 -5.8229 -0.0129 22 7 1.4608 -4.6599 -0.0071 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3634 -0.8900 -0.5139 26 1 1.9317 1.9145 0.8418 27 1 3.3288 1.1078 0.0896 28 1 2.3164 1.4422 -2.1491 29 1 0.9193 2.2488 -1.3969 30 1 2.4245 3.9859 -0.4657 31 1 3.8212 3.1788 -1.2181 32 1 3.2488 6.8429 -4.1089 33 1 0.4765 -2.3220 -0.0005 34 1 5.2359 -4.6089 -0.0249 35 1 1.5323 -6.7472 -0.0132 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857220680.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:18 Heat of formation + Delta-G solvation = 78.890613 kcal Electronic energy + Delta-G solvation = -18329.091447 eV Core-core repulsion = 15196.180918 eV Total energy + Delta-G solvation = -3132.910529 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.28560 -38.38630 -37.00020 -35.24168 -34.11043 -33.44330 -31.93186 -30.26880 -28.42253 -27.68701 -25.13645 -24.07799 -23.00861 -20.34643 -19.64951 -18.66669 -17.57386 -16.77728 -16.63118 -16.24087 -15.70755 -15.04371 -14.46327 -14.29302 -14.04528 -13.93846 -13.57226 -12.97467 -12.66414 -12.18939 -12.08575 -11.84577 -11.74804 -11.71045 -11.63388 -11.25556 -11.08415 -10.80221 -10.23803 -9.98847 -9.88388 -9.74693 -9.59286 -9.40725 -9.19217 -8.53462 -8.17059 -6.04018 -4.02296 0.53728 0.73692 1.64520 2.12110 2.12843 3.32115 3.39412 3.42249 3.50118 3.71668 4.09328 4.12055 4.45721 4.57049 4.57874 4.90301 5.06164 5.27453 5.30071 5.33296 5.59796 5.70700 5.78410 5.83666 6.01919 6.28852 6.38498 6.52192 6.60062 6.86089 6.89174 7.28481 7.41057 7.56007 7.79193 8.24408 8.53599 9.00759 9.58369 11.09448 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.029033 B = 0.002587 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.195586 B =10821.089849 C =11346.743637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.117 3.883 3 C -0.066 4.066 4 C -0.096 4.096 5 C -0.014 4.014 6 C -0.521 4.521 7 H 0.071 0.929 8 C 0.065 3.935 9 N -0.904 5.904 10 Si 0.881 3.119 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.264 1.264 14 N -0.235 5.235 15 N -0.548 5.548 16 C 0.589 3.411 17 N -0.517 5.517 18 C 0.208 3.792 19 C -0.211 4.211 20 Cl -0.049 7.049 21 C 0.209 3.791 22 N -0.559 5.559 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.018 0.982 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.401 0.599 34 H 0.178 0.822 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 -24.178 11.184 26.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.077 4.077 3 C -0.105 4.105 4 C -0.134 4.134 5 C -0.051 4.051 6 C -0.559 4.559 7 H 0.089 0.911 8 C -0.136 4.136 9 N -0.544 5.544 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.189 1.189 14 N -0.040 5.040 15 N -0.273 5.273 16 C 0.233 3.767 17 N -0.237 5.237 18 C 0.037 3.963 19 C -0.246 4.246 20 Cl -0.021 7.021 21 C 0.040 3.960 22 N -0.282 5.282 23 H 0.102 0.898 24 H 0.114 0.886 25 H 0.080 0.920 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.244 0.756 34 H 0.195 0.805 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.514 -23.635 11.092 26.152 hybrid contribution -0.158 -0.300 0.461 0.572 sum -1.671 -23.935 11.553 26.629 Atomic orbital electron populations 1.21410 0.93010 1.04353 1.03531 1.25462 0.94672 0.94100 0.93467 1.20718 1.00093 0.88663 1.01069 1.21464 1.00934 0.97316 0.93728 1.19581 0.95327 0.92408 0.97814 1.21134 1.29528 1.03242 1.01976 0.91094 1.25045 0.96298 0.96950 0.95304 1.69918 1.44649 1.15251 1.24536 0.86765 0.81466 0.78167 0.82807 1.20276 1.21485 1.18902 1.74684 1.23336 0.90036 1.15954 1.44915 1.06919 1.00004 1.75505 1.18802 0.85427 0.84694 0.87745 1.68259 1.06687 1.29653 1.19103 1.23165 1.01117 0.84854 0.87130 1.22471 0.95081 0.90035 1.16992 1.98369 1.76029 1.30375 1.97354 1.22877 0.89714 0.95601 0.87812 1.67903 1.40431 0.97295 1.22541 0.89828 0.88561 0.91955 0.89576 0.89899 0.92469 0.92314 0.96406 0.96785 0.92755 0.75606 0.80532 0.80532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.46 36.01 0.34 -1.33 16 2 C 0.12 1.57 6.55 -78.91 -0.52 1.05 16 3 C -0.07 -0.97 5.60 -27.89 -0.16 -1.12 16 4 C -0.10 -1.75 5.03 -26.73 -0.13 -1.88 16 5 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 6 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 7 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 8 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 9 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 10 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 14 N -0.24 -3.53 10.93 35.60 0.39 -3.14 16 15 N -0.55 -7.32 6.26 29.79 0.19 -7.14 16 16 C 0.59 8.01 8.54 -322.59 -2.76 5.26 16 17 N -0.52 -7.15 9.94 -13.86 -0.14 -7.28 16 18 C 0.21 2.15 11.12 -17.18 -0.19 1.96 16 19 C -0.21 -1.89 6.36 -39.23 -0.25 -2.14 16 20 Cl -0.05 -0.37 29.02 -51.86 -1.50 -1.87 16 21 C 0.21 1.88 11.12 -17.19 -0.19 1.69 16 22 N -0.56 -6.53 10.46 -13.87 -0.14 -6.68 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.10 0.99 6.91 -51.92 -0.36 0.63 16 25 H 0.06 0.58 6.31 -51.93 -0.33 0.25 16 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.02 7.01 -51.93 -0.36 0.66 16 30 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 31 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 33 H 0.40 4.46 6.50 -182.60 -1.19 3.27 16 34 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 318.19 15.07 4.80 4.80 Total: -1.00 -32.68 318.19 -9.83 -42.51 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.13 Total: -0.88 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -4.40 Total: -10.09 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 1.07 Total: -51.26 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.50 Total: -1.87 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.68 -9.83 -42.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857220680.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.405 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds