Wall clock time and date at job start Tue Mar 31 2020 05:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48501 * 109.46950 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47074 * 300.00488 * 3 2 1 6 6 H 1.48505 * 109.46997 * 60.00482 * 3 2 1 7 7 C 1.37873 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.46951 * 111.00081 * 293.80060 * 10 9 7 12 12 C 1.53045 * 109.36542 * 176.80928 * 11 10 9 13 13 N 1.46956 * 109.36490 * 58.40251 * 12 11 10 14 14 C 1.38995 * 111.00325 * 176.80868 * 13 12 11 15 15 C 1.39301 * 120.08759 * 303.80271 * 14 13 12 16 16 N 1.31941 * 119.92566 * 179.97438 * 15 14 13 17 17 C 1.32236 * 120.10412 * 359.97438 * 16 15 14 18 18 C 1.38346 * 120.16983 * 0.02562 * 17 16 15 19 19 Cl 1.73595 * 119.96075 * 179.97438 * 18 17 16 20 20 N 1.32335 * 120.07455 * 359.74425 * 18 17 16 21 21 C 1.46954 * 110.88190 * 300.68146 * 13 12 11 22 22 C 1.46953 * 110.99875 * 170.00105 * 10 9 7 23 23 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47103 * 60.00168 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00046 * 9 7 2 26 26 H 1.09005 * 109.48678 * 296.77705 * 11 10 9 27 27 H 1.09004 * 109.48825 * 56.84230 * 11 10 9 28 28 H 1.08998 * 109.49025 * 298.43470 * 12 11 10 29 29 H 1.09004 * 109.51053 * 178.37481 * 12 11 10 30 30 H 1.08002 * 120.03569 * 359.95022 * 15 14 13 31 31 H 1.07992 * 119.91568 * 179.97438 * 17 16 15 32 32 H 1.09005 * 109.48381 * 299.35289 * 21 13 12 33 33 H 1.08996 * 109.51190 * 179.29618 * 21 13 12 34 34 H 1.09003 * 109.48921 * 303.15321 * 22 10 9 35 35 H 1.09004 * 109.49415 * 63.22045 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 2.9689 -3.6562 -1.2558 12 6 4.0044 -4.7808 -1.1841 13 7 3.3197 -6.0592 -0.9459 14 6 4.2230 -7.1156 -0.9459 15 6 5.0465 -7.3303 -2.0487 16 7 5.9031 -8.3338 -2.0451 17 6 5.9812 -9.1354 -0.9964 18 6 5.1653 -8.9261 0.1011 19 17 5.2719 -9.9821 1.4747 20 7 4.3069 -7.9189 0.1067 21 6 2.5566 -6.0187 0.3093 22 6 1.5211 -4.8939 0.2377 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.2897 -3.8397 -2.0884 27 1 3.4767 -2.7031 -1.4035 28 1 4.6999 -4.5833 -0.3685 29 1 4.5523 -4.8317 -2.1250 30 1 4.9836 -6.6762 -2.9059 31 1 6.6831 -9.9561 -0.9968 32 1 3.2358 -5.8352 1.1420 33 1 2.0487 -6.9717 0.4575 34 1 0.9735 -4.8433 1.1788 35 1 0.8255 -5.0915 -0.5780 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866214906.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:05 Heat of formation + Delta-G solvation = 65.776696 kcal Electronic energy + Delta-G solvation = -19568.107538 eV Core-core repulsion = 16434.628346 eV Total energy + Delta-G solvation = -3133.479191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.55044 -38.91993 -37.07125 -35.67847 -34.09694 -32.62311 -30.86993 -30.57490 -27.93162 -25.64421 -25.00249 -23.37576 -22.86229 -21.55762 -19.54871 -17.98519 -17.89311 -16.94410 -16.36222 -15.77874 -15.52170 -14.75730 -14.54252 -14.30901 -14.19205 -13.76489 -13.36201 -13.24273 -12.48469 -12.27055 -12.07913 -11.76405 -11.71383 -11.48109 -11.21430 -11.06698 -10.92447 -10.81667 -10.58747 -10.49814 -9.95393 -9.84510 -9.47262 -9.23903 -8.50224 -8.38381 -7.37700 -6.08457 -4.10545 0.39739 0.78789 1.37524 3.13686 3.27313 3.35168 3.39062 3.42036 3.95639 4.12708 4.27472 4.36871 4.74821 4.82482 4.97526 5.07730 5.27021 5.30432 5.46536 5.58681 5.68428 5.72555 5.80117 6.03322 6.28273 6.39157 6.43510 6.52580 6.80032 7.03512 7.19915 7.25622 7.42329 7.71612 7.98202 8.08688 8.44383 8.96837 9.54269 11.02372 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.033707 B = 0.003449 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.486834 B = 8117.062392 C = 8415.333952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.539 5.539 11 C 0.066 3.934 12 C 0.060 3.940 13 N -0.467 5.467 14 C 0.299 3.701 15 C 0.040 3.960 16 N -0.402 5.402 17 C 0.024 3.976 18 C 0.157 3.843 19 Cl -0.020 7.020 20 N -0.476 5.476 21 C 0.070 3.930 22 C 0.052 3.948 23 H 0.261 0.739 24 H -0.006 1.006 25 H 0.032 0.968 26 H 0.035 0.965 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.179 0.821 31 H 0.175 0.825 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.195 -17.511 -2.061 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.063 4.063 12 C -0.065 4.065 13 N -0.184 5.184 14 C 0.063 3.937 15 C -0.127 4.127 16 N -0.115 5.115 17 C -0.136 4.136 18 C -0.011 4.011 19 Cl 0.009 6.991 20 N -0.199 5.199 21 C -0.057 4.057 22 C -0.077 4.077 23 H 0.071 0.929 24 H 0.012 0.988 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.115 0.885 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.196 0.804 31 H 0.193 0.807 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 10.007 -17.400 -1.920 20.164 hybrid contribution 0.043 0.732 0.138 0.746 sum 10.050 -16.668 -1.782 19.545 Atomic orbital electron populations 1.69965 1.06081 1.26776 1.50827 1.24992 0.94860 0.99360 0.95342 0.86448 0.80041 0.83406 0.77559 1.19655 1.21078 1.20989 1.21168 0.93477 0.89878 1.50304 0.91818 1.19728 0.89964 0.87084 0.96364 1.62329 1.28427 1.02888 1.32770 1.22046 0.95334 0.97064 0.91875 1.22586 0.96725 0.85638 1.01575 1.59354 1.20587 1.02808 1.35681 1.21012 0.90036 0.93362 0.89286 1.23454 0.93356 0.97146 0.98716 1.68477 1.16721 1.02002 1.24299 1.23318 1.00388 1.00941 0.88939 1.22717 0.94832 0.92785 0.90780 1.98425 1.96785 1.61417 1.42503 1.67762 1.20705 1.05227 1.26188 1.22191 0.96019 0.99551 0.87949 1.22174 0.94646 0.89630 1.01235 0.92900 0.98843 0.95004 0.94663 0.88460 0.92414 0.89793 0.80363 0.80750 0.92078 0.89902 0.90140 0.94866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.51 -13.78 8.47 -34.44 -0.29 -14.07 16 8 H 0.06 1.69 7.13 -52.48 -0.37 1.32 16 9 C 0.19 4.85 4.72 -4.97 -0.02 4.83 16 10 N -0.54 -11.03 4.70 -235.90 -1.11 -12.14 16 11 C 0.07 1.16 5.43 -3.77 -0.02 1.14 16 12 C 0.06 0.84 5.37 -3.77 -0.02 0.82 16 13 N -0.47 -6.67 4.74 -172.91 -0.82 -7.49 16 14 C 0.30 3.98 6.40 -154.73 -0.99 2.99 16 15 C 0.04 0.46 10.37 -17.11 -0.18 0.28 16 16 N -0.40 -4.61 10.49 -12.85 -0.13 -4.74 16 17 C 0.02 0.25 10.99 -17.34 -0.19 0.06 16 18 C 0.16 1.83 7.28 -17.30 -0.13 1.70 16 19 Cl -0.02 -0.20 29.13 -51.86 -1.51 -1.71 16 20 N -0.48 -6.51 8.88 -9.36 -0.08 -6.60 16 21 C 0.07 1.06 4.79 -3.77 -0.02 1.04 16 22 C 0.05 0.91 5.61 -3.77 -0.02 0.89 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 24 H -0.01 -0.17 8.12 -51.93 -0.42 -0.59 16 25 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.10 1.83 6.79 -51.93 -0.35 1.48 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.93 6.81 -51.93 -0.35 0.58 16 30 H 0.18 1.65 7.18 -52.49 -0.38 1.27 16 31 H 0.18 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 33 H 0.08 1.20 7.84 -51.93 -0.41 0.80 16 34 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 305.79 15.07 4.61 4.61 Total: -1.00 -29.57 305.79 -9.68 -39.25 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -4.37 Total: -3.00 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.98 Total: 1.13 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -1.41 Total: -56.33 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.51 Total: -1.71 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.57 -9.68 -39.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866214906.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.023 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds