Wall clock time and date at job start Tue Mar 31 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.50701 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.33859 * 124.51584 * 89.72664 * 4 3 2 6 6 C 1.37419 * 115.10984 * 179.79005 * 5 4 3 7 7 C 1.36753 * 113.28319 * 0.48523 * 6 5 4 8 8 C 1.46394 * 125.45826 * 179.76435 * 7 6 5 9 9 O 1.21626 * 120.00196 * 359.97438 * 8 7 6 10 10 O 1.34895 * 119.99906 * 180.02562 * 8 7 6 11 11 C 1.45202 * 117.00151 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46973 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.46908 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47179 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99449 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99981 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00274 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00005 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47257 * 90.00224 * 18 16 14 20 20 H 1.48506 * 109.46910 * 209.99945 * 18 16 14 21 21 H 1.48498 * 109.47164 * 329.99776 * 18 16 14 22 22 S 1.70605 * 124.52052 * 270.02541 * 4 3 2 23 23 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 25 25 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 27 27 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 28 28 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 29 29 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 30 30 H 1.08001 * 122.44851 * 359.97438 * 5 4 3 31 31 H 1.07996 * 123.35810 * 180.26533 * 6 5 4 32 32 H 1.08997 * 109.47214 * 299.99987 * 11 10 8 33 33 H 1.08998 * 109.47024 * 59.99993 * 11 10 8 34 34 H 1.08997 * 109.47164 * 300.00047 * 12 11 10 35 35 H 1.08998 * 109.47228 * 60.00147 * 12 11 10 36 36 H 1.08997 * 109.47162 * 299.99944 * 13 12 11 37 37 H 1.08998 * 109.47141 * 59.99990 * 13 12 11 38 38 H 0.96994 * 120.00526 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3060 1.4369 -1.1020 6 6 5.6616 1.4425 -0.8769 7 6 5.9891 1.4421 0.4509 8 6 7.3502 1.4424 0.9899 9 8 8.3034 1.4426 0.2345 10 8 7.5471 1.4415 2.3244 11 6 8.9232 1.4413 2.7877 12 6 8.9463 1.4408 4.3175 13 6 10.3963 1.4412 4.8057 14 6 10.4191 1.4414 6.3125 15 1 9.4920 1.4417 6.8665 16 6 11.6234 1.4423 6.9837 17 7 11.6434 1.4430 8.2987 18 14 13.2269 1.4426 6.0254 19 1 13.6511 2.8427 5.7708 20 1 14.2742 0.7434 6.8126 21 1 13.0301 0.7418 4.7310 22 16 4.5132 1.4419 1.4067 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.8838 1.4316 -2.0960 31 1 6.3952 1.4433 -1.6694 32 1 9.4316 0.5516 2.4160 33 1 9.4314 2.3315 2.4173 34 1 8.4380 2.3307 4.6888 35 1 8.4380 0.5508 4.6883 36 1 10.9050 0.5516 4.4344 37 1 10.9043 2.3315 4.4349 38 1 12.4906 1.4433 8.7710 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869936217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:40 Heat of formation + Delta-G solvation = -85.115881 kcal Electronic energy + Delta-G solvation = -18504.486174 eV Core-core repulsion = 15437.755088 eV Total energy + Delta-G solvation = -3066.731086 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.20643 -38.44394 -36.48063 -35.23723 -34.07528 -31.88429 -30.79906 -28.12675 -26.97801 -24.35458 -23.19580 -21.89213 -21.78132 -20.33965 -19.19870 -18.34403 -16.96945 -16.40192 -16.39184 -16.29940 -15.34504 -14.81659 -14.42936 -14.21128 -14.04939 -13.67927 -13.16366 -12.99639 -12.85501 -12.72832 -12.32134 -12.19530 -11.94346 -11.82992 -11.62151 -11.25281 -11.06688 -11.00803 -10.93343 -10.66920 -10.45549 -10.03019 -9.82250 -9.73315 -9.25090 -8.98533 -8.82606 -8.56788 -6.07018 -4.06069 0.17461 1.21135 1.68738 2.04340 2.75025 2.87780 3.30104 3.37687 3.41266 4.22559 4.43051 4.50995 4.59535 4.83377 4.86428 5.01912 5.06677 5.23665 5.26243 5.31057 5.34919 5.45152 5.47369 5.61879 5.62076 5.73803 5.81309 5.84431 5.88683 6.06422 6.31780 6.38375 6.62480 6.78489 7.20721 7.32171 7.71230 7.80372 8.49678 8.97199 9.54458 11.06121 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.032402 B = 0.002739 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.927456 B =10219.742522 C =10940.800593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.053 4.053 4 C -0.199 4.199 5 C -0.158 4.158 6 C -0.046 4.046 7 C -0.261 4.261 8 C 0.535 3.465 9 O -0.504 6.504 10 O -0.353 6.353 11 C 0.068 3.932 12 C -0.102 4.102 13 C -0.011 4.011 14 C -0.521 4.521 15 H 0.074 0.926 16 C 0.067 3.933 17 N -0.901 5.901 18 Si 0.879 3.121 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 S 0.259 5.741 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.144 0.856 31 H 0.154 0.846 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.539 -0.861 -19.873 29.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.092 4.092 4 C -0.319 4.319 5 C -0.189 4.189 6 C -0.080 4.080 7 C -0.380 4.380 8 C 0.379 3.621 9 O -0.394 6.394 10 O -0.270 6.270 11 C -0.005 4.005 12 C -0.139 4.139 13 C -0.048 4.048 14 C -0.559 4.559 15 H 0.092 0.908 16 C -0.134 4.134 17 N -0.540 5.540 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.190 1.190 22 S 0.529 5.471 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.162 0.838 31 H 0.171 0.829 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.033 0.967 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.413 -0.859 -18.310 28.187 hybrid contribution 1.458 0.036 -2.047 2.514 sum -19.955 -0.823 -20.357 28.518 Atomic orbital electron populations 1.21779 0.95219 1.02048 1.01994 1.21578 0.96050 0.95416 1.02932 1.20276 0.86927 0.98224 1.03733 1.24537 1.01557 1.07042 0.98789 1.19883 0.92264 1.07035 0.99702 1.20749 0.96432 0.96111 0.94668 1.23653 0.95485 1.21059 0.97770 1.19627 0.87702 0.73228 0.81585 1.90874 1.42544 1.46345 1.59648 1.86585 1.34338 1.83595 1.22485 1.23550 0.77247 1.02302 0.97403 1.21573 1.00805 1.02908 0.88629 1.19523 0.90922 0.96718 0.97638 1.21047 0.94605 1.51192 0.89076 0.90778 1.25016 0.99167 0.94470 0.94779 1.69904 1.26488 1.50852 1.06769 0.86784 0.83456 0.78606 0.80502 1.20200 1.21275 1.18970 1.83453 0.92567 1.65519 1.05549 0.92488 0.92596 0.92383 0.91453 0.91497 0.90374 0.89729 0.83797 0.82878 0.91317 0.91326 0.91463 0.91438 0.96237 0.96675 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.15 0.37 -0.34 16 2 C -0.12 -0.69 5.92 -26.74 -0.16 -0.85 16 3 C -0.05 -0.31 5.64 -27.88 -0.16 -0.47 16 4 C -0.20 -1.68 5.53 -35.85 -0.20 -1.88 16 5 C -0.16 -1.36 9.99 -41.42 -0.41 -1.78 16 6 C -0.05 -0.50 10.01 -40.42 -0.40 -0.90 16 7 C -0.26 -3.39 6.45 -36.84 -0.24 -3.63 16 8 C 0.53 8.68 7.92 34.01 0.27 8.95 16 9 O -0.50 -9.24 16.64 -19.36 -0.32 -9.57 16 10 O -0.35 -6.00 10.08 -41.03 -0.41 -6.42 16 11 C 0.07 1.21 5.48 37.16 0.20 1.42 16 12 C -0.10 -2.04 5.53 -26.73 -0.15 -2.19 16 13 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 14 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 15 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 18 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 22 S 0.26 2.70 22.87 -107.50 -2.46 0.24 16 23 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 37 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -32.01 340.07 -9.23 -41.24 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -5.85 Total: -5.33 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -1.42 Total: -15.37 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.77 Total: -27.04 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.74 Total: -15.98 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.46 Total: 0.24 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.01 -9.23 -41.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869936217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.876 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds