Wall clock time and date at job start Tue Mar 31 2020 05:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 120.00018 * 2 1 4 4 H 1.48503 * 109.47141 * 274.98261 * 3 2 1 5 5 H 1.48495 * 109.47281 * 34.98533 * 3 2 1 6 6 H 1.48505 * 109.47140 * 154.98508 * 3 2 1 7 7 C 1.40036 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00292 * 173.70202 * 7 2 1 9 9 C 1.41332 * 119.99497 * 353.71210 * 7 2 1 10 10 C 1.40617 * 119.78514 * 186.46614 * 9 7 2 11 11 C 1.38308 * 119.12781 * 179.97438 * 10 9 7 12 12 C 1.38699 * 118.67018 * 359.97438 * 11 10 9 13 13 C 1.39635 * 119.49577 * 0.02562 * 12 11 10 14 14 N 1.39269 * 119.57443 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99882 * 340.96226 * 14 13 12 16 16 O 1.21281 * 119.99647 * 354.52031 * 15 14 13 17 17 C 1.50694 * 120.00097 * 174.51502 * 15 14 13 18 18 H 1.08994 * 115.55160 * 325.67835 * 17 15 14 19 19 C 1.53007 * 117.49681 * 111.38201 * 17 15 14 20 20 C 1.52993 * 60.00027 * 107.48887 * 19 17 15 21 21 H 1.08997 * 117.50131 * 252.50501 * 20 19 17 22 22 C 1.53006 * 117.51734 * 107.48299 * 20 19 17 23 23 F 1.39893 * 109.47099 * 111.36980 * 22 20 19 24 24 F 1.39906 * 109.47103 * 231.37052 * 22 20 19 25 25 N 1.31920 * 120.85004 * 0.25341 * 13 12 11 26 26 H 0.96999 * 119.99734 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.43425 * 359.97438 * 10 9 7 28 28 H 1.08000 * 120.66400 * 179.97438 * 11 10 9 29 29 H 1.07996 * 120.25134 * 179.97438 * 12 11 10 30 30 H 0.96996 * 120.00236 * 161.24347 * 14 13 12 31 31 H 1.09002 * 117.49768 * 214.98716 * 19 17 15 32 32 H 1.09001 * 117.49792 * 359.97438 * 19 17 15 33 33 H 1.08999 * 109.46986 * 351.36851 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3836 2.1072 -1.3948 5 1 1.4956 2.6199 0.8027 6 1 3.5877 1.4120 0.5920 7 6 2.0077 -1.2127 0.0005 8 1 3.0827 -1.2156 -0.1020 9 6 1.3073 -2.4329 0.1351 10 6 2.0212 -3.6366 0.2722 11 6 1.3221 -4.8228 0.4035 12 6 -0.0643 -4.7824 0.3959 13 6 -0.7156 -3.5552 0.2564 14 7 -2.1076 -3.5128 0.2480 15 6 -2.8143 -4.6308 -0.0115 16 8 -2.2407 -5.6492 -0.3350 17 6 -4.3170 -4.6153 0.1005 18 1 -4.7235 -3.9757 0.8838 19 6 -5.1232 -4.7480 -1.1931 20 6 -5.0617 -5.9160 -0.2069 21 1 -4.4648 -6.7829 -0.4901 22 6 -6.3201 -6.2193 0.6089 23 9 -6.8627 -7.4398 0.1927 24 9 -5.9891 -6.2948 1.9661 25 7 -0.0293 -2.4360 0.1270 26 1 -0.4850 0.8401 0.0004 27 1 3.1012 -3.6349 0.2748 28 1 1.8453 -5.7616 0.5099 29 1 -0.6357 -5.6933 0.4963 30 1 -2.5685 -2.6779 0.4248 31 1 -6.0602 -4.1953 -1.2611 32 1 -4.5666 -4.8460 -2.1252 33 1 -7.0517 -5.4258 0.4569 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882472091.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:14 Heat of formation + Delta-G solvation = -70.850945 kcal Electronic energy + Delta-G solvation = -21086.376487 eV Core-core repulsion = 17362.883245 eV Total energy + Delta-G solvation = -3723.493242 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.08731 -47.11731 -40.17025 -38.15886 -36.61023 -34.33049 -33.30329 -30.45869 -29.44235 -27.50590 -25.66480 -24.37690 -21.99799 -21.64967 -21.12349 -19.76046 -18.08819 -17.52383 -17.34170 -16.92630 -16.79705 -15.88654 -15.09114 -14.87716 -14.52460 -14.41666 -14.02226 -13.75967 -13.48856 -13.33084 -13.10521 -12.81038 -12.36098 -12.34575 -12.01793 -11.31141 -11.22229 -11.13819 -10.98273 -10.92515 -10.71766 -10.67627 -10.16614 -9.89317 -9.27739 -9.06444 -8.09330 -7.74259 -7.16820 -6.47190 -4.55005 2.27165 2.81956 3.05635 3.06326 3.09519 3.17090 3.20813 3.43622 3.72929 3.91788 4.01638 4.22207 4.40648 4.62379 4.74199 4.91502 4.99270 5.06632 5.34467 5.66725 5.79902 5.85424 6.12951 6.36864 6.71896 6.74765 6.79194 7.09629 7.41594 7.45624 7.79975 7.84319 8.07265 8.23718 8.57110 8.66500 8.91614 9.98691 10.26459 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028546 B = 0.003688 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.631860 B = 7589.895225 C = 8235.134520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.435 4.435 8 H 0.086 0.914 9 C 0.279 3.721 10 C -0.286 4.286 11 C -0.050 4.050 12 C -0.313 4.313 13 C 0.355 3.645 14 N -0.638 5.638 15 C 0.541 3.459 16 O -0.518 6.518 17 C -0.162 4.162 18 H 0.133 0.867 19 C -0.128 4.128 20 C -0.193 4.193 21 H 0.141 0.859 22 C 0.297 3.703 23 F -0.201 7.201 24 F -0.201 7.201 25 N -0.506 5.506 26 H 0.271 0.729 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.130 0.870 30 H 0.409 0.591 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.548 -3.818 -0.127 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.153 4.153 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.104 0.896 9 C 0.152 3.848 10 C -0.309 4.309 11 C -0.074 4.074 12 C -0.337 4.337 13 C 0.121 3.879 14 N -0.282 5.282 15 C 0.327 3.673 16 O -0.394 6.394 17 C -0.184 4.184 18 H 0.151 0.849 19 C -0.165 4.165 20 C -0.212 4.212 21 H 0.159 0.841 22 C 0.243 3.757 23 F -0.183 7.183 24 F -0.182 7.182 25 N -0.224 5.224 26 H 0.082 0.918 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.148 0.852 30 H 0.245 0.755 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.784 -3.646 -0.410 13.300 hybrid contribution 0.622 0.341 0.322 0.779 sum -12.162 -3.305 -0.088 12.604 Atomic orbital electron populations 1.70115 1.07261 1.27574 1.29546 1.26040 0.94883 1.01045 0.93336 0.86313 0.80652 0.80849 0.79005 1.19540 1.20121 1.18469 1.19573 0.94677 0.89344 1.43092 0.89618 1.18189 0.86346 0.92075 0.88190 1.21738 0.98851 0.93732 1.16580 1.20818 0.93671 0.96647 0.96281 1.21590 0.94664 0.97879 1.19603 1.18481 0.82736 0.91430 0.95302 1.43071 1.05619 1.11907 1.67581 1.19323 0.87376 0.83440 0.77196 1.90636 1.70471 1.32444 1.45816 1.22203 0.92422 1.01061 1.02700 0.84873 1.23138 1.01547 0.98135 0.93684 1.23352 0.98554 0.95878 1.03442 0.84113 1.21296 0.93835 0.84255 0.76273 1.92991 1.86966 1.48273 1.90030 1.93019 1.93892 1.96783 1.34528 1.68047 1.08474 1.24639 1.21287 0.91810 0.88140 0.88253 0.85226 0.75522 0.86866 0.86800 0.86961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.47 11.49 55.55 0.64 -17.83 16 2 C 0.07 1.78 5.49 -17.34 -0.10 1.68 16 3 Si 0.91 18.17 29.56 -169.99 -5.03 13.14 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.43 -11.50 9.13 -37.73 -0.34 -11.84 16 8 H 0.09 2.12 7.85 -52.49 -0.41 1.71 16 9 C 0.28 7.62 6.54 -84.99 -0.56 7.06 16 10 C -0.29 -7.17 9.83 -38.66 -0.38 -7.55 16 11 C -0.05 -1.17 10.15 -39.39 -0.40 -1.57 16 12 C -0.31 -7.65 8.83 -38.89 -0.34 -7.99 16 13 C 0.35 8.72 7.51 -154.98 -1.16 7.56 16 14 N -0.64 -12.52 5.41 -11.40 -0.06 -12.58 16 15 C 0.54 9.49 7.45 -10.99 -0.08 9.40 16 16 O -0.52 -10.81 13.06 5.56 0.07 -10.74 16 17 C -0.16 -1.91 5.87 -91.77 -0.54 -2.45 16 18 H 0.13 1.25 8.14 -51.93 -0.42 0.82 16 19 C -0.13 -1.15 9.88 -26.73 -0.26 -1.41 16 20 C -0.19 -2.07 5.40 -90.62 -0.49 -2.56 16 21 H 0.14 1.80 7.67 -51.93 -0.40 1.40 16 22 C 0.30 2.77 5.50 37.16 0.20 2.97 16 23 F -0.20 -2.21 17.34 2.25 0.04 -2.17 16 24 F -0.20 -2.39 17.29 2.25 0.04 -2.35 16 25 N -0.51 -13.67 7.92 -10.26 -0.08 -13.75 16 26 H 0.27 6.23 8.29 -40.82 -0.34 5.89 16 27 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 28 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 29 H 0.13 3.13 5.34 -52.50 -0.28 2.85 16 30 H 0.41 7.10 8.83 -40.82 -0.36 6.74 16 31 H 0.11 0.64 8.05 -51.93 -0.42 0.22 16 32 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.11 0.61 7.90 -51.93 -0.41 0.20 16 LS Contribution 301.32 15.07 4.54 4.54 Total: -1.00 -31.72 301.32 -7.40 -39.11 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -3.10 Total: 9.33 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -4.45 Total: -6.71 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.50 Total: -44.16 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.08 Total: -4.53 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.72 -7.40 -39.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472091.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.739 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds