Wall clock time and date at job start Tue Mar 31 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33389 * 125.20569 * 2 1 4 4 C 1.38423 * 114.92327 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.53916 * 179.97438 * 4 3 2 6 6 C 1.33389 * 114.92126 * 0.24541 * 4 3 2 7 7 C 1.50697 * 125.20130 * 179.75688 * 6 4 3 8 8 C 1.50700 * 109.47191 * 90.00429 * 7 6 4 9 9 O 1.20829 * 119.99924 * 359.97438 * 8 7 6 10 10 O 1.34224 * 120.00198 * 180.02562 * 8 7 6 11 11 C 1.45195 * 117.00229 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47092 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.47059 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47021 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00432 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00061 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99885 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00307 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47299 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47257 * 120.00137 * 18 16 14 21 21 H 1.48504 * 109.47160 * 240.00160 * 18 16 14 22 22 S 1.75883 * 125.20301 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.46938 * 90.00347 * 1 2 3 24 24 H 1.08998 * 109.47344 * 210.00455 * 1 2 3 25 25 H 1.08997 * 109.46809 * 330.00353 * 1 2 3 26 26 H 1.08005 * 122.53851 * 359.97438 * 3 2 1 27 27 H 1.09002 * 109.47152 * 90.02359 * 5 4 3 28 28 H 1.09001 * 109.46980 * 330.02460 * 5 4 3 29 29 H 1.09004 * 109.47113 * 210.02440 * 5 4 3 30 30 H 1.09001 * 109.46734 * 209.99863 * 7 6 4 31 31 H 1.09000 * 109.47376 * 329.99548 * 7 6 4 32 32 H 1.09000 * 109.47245 * 299.99448 * 11 10 8 33 33 H 1.09003 * 109.47451 * 59.99385 * 11 10 8 34 34 H 1.09001 * 109.47329 * 299.99357 * 12 11 10 35 35 H 1.08997 * 109.47761 * 59.99953 * 12 11 10 36 36 H 1.09000 * 109.47339 * 299.99828 * 13 12 11 37 37 H 1.09002 * 109.46891 * 59.99939 * 13 12 11 38 38 H 0.96997 * 119.99863 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9482 0.0001 6 6 3.9751 -0.4478 -0.0042 7 6 5.3861 -0.9770 -0.0099 8 6 5.8606 -1.1577 1.4090 9 8 5.1283 -0.8842 2.3304 10 8 7.0971 -1.6214 1.6493 11 6 7.4868 -1.7696 3.0401 12 6 8.9176 -2.3065 3.1143 13 6 9.3286 -2.4621 4.5799 14 6 10.7375 -2.9916 4.6530 15 1 11.2854 -3.1962 3.7450 16 6 11.3278 -3.2137 5.8791 17 7 10.6609 -2.9640 6.9849 18 14 13.0746 -3.8694 5.9698 19 1 13.6016 -4.0658 4.5954 20 1 13.9316 -2.8963 6.6937 21 1 13.0795 -5.1667 6.6924 22 16 2.5209 -1.4372 0.0006 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.8669 2.0895 -0.0004 27 1 4.9093 2.2151 1.0276 28 1 4.2565 2.8194 -0.5141 29 1 5.5621 1.6095 -0.5137 30 1 5.4121 -1.9365 -0.5266 31 1 6.0373 -0.2699 -0.5237 32 1 7.4358 -0.8008 3.5369 33 1 6.8111 -2.4675 3.5345 34 1 8.9683 -3.2755 2.6176 35 1 9.5937 -1.6090 2.6199 36 1 9.2780 -1.4930 5.0763 37 1 8.6526 -3.1595 5.0747 38 1 11.0760 -3.1207 7.8474 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885100828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:57 Heat of formation + Delta-G solvation = -84.344801 kcal Electronic energy + Delta-G solvation = -18821.337410 eV Core-core repulsion = 15754.639761 eV Total energy + Delta-G solvation = -3066.697649 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30512 -38.64789 -36.43109 -33.99801 -33.67901 -31.75778 -30.72352 -28.52016 -27.16605 -25.29996 -23.22533 -21.84950 -20.92087 -20.32349 -18.45657 -17.52093 -17.35405 -16.48332 -16.29279 -15.76278 -15.04809 -14.46889 -14.39135 -14.34526 -13.59620 -13.45897 -13.39120 -13.04208 -12.87113 -12.52663 -12.20181 -12.01055 -11.89351 -11.81303 -11.64474 -11.53041 -10.98596 -10.84022 -10.65026 -10.62703 -10.38014 -10.34595 -9.72298 -9.51838 -9.15390 -8.65630 -8.41267 -8.39403 -6.03913 -4.06908 0.74983 1.42608 1.81587 2.35633 2.43373 3.04603 3.29821 3.37250 3.41650 4.37061 4.43323 4.54249 4.84499 4.94387 5.00400 5.08776 5.20287 5.22454 5.24890 5.32107 5.41012 5.51127 5.57137 5.58459 5.64026 5.78543 5.95596 6.01810 6.22069 6.37367 6.51238 6.54043 6.85459 6.98633 7.60282 7.71046 7.94027 7.95856 8.35713 8.99681 9.57445 11.07610 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.042299 B = 0.002562 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.799140 B =10924.500563 C =11058.803932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.176 4.176 3 C -0.136 4.136 4 C -0.083 4.083 5 C -0.099 4.099 6 C -0.178 4.178 7 C -0.042 4.042 8 C 0.455 3.545 9 O -0.500 6.500 10 O -0.358 6.358 11 C 0.069 3.931 12 C -0.109 4.109 13 C 0.023 3.977 14 C -0.520 4.520 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 S 0.110 5.890 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.138 0.862 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.381 7.548 -18.001 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.294 4.294 3 C -0.167 4.167 4 C -0.095 4.095 5 C -0.158 4.158 6 C -0.295 4.295 7 C -0.082 4.082 8 C 0.296 3.704 9 O -0.387 6.387 10 O -0.275 6.275 11 C -0.004 4.004 12 C -0.146 4.146 13 C -0.014 4.014 14 C -0.559 4.559 15 H 0.076 0.924 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 S 0.376 5.624 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.156 0.844 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.863 6.021 -17.492 26.420 hybrid contribution 1.165 1.126 0.444 1.680 sum -17.698 7.148 -17.049 25.592 Atomic orbital electron populations 1.20334 0.87801 1.03254 1.02646 1.24441 0.99905 0.95863 1.09168 1.19882 0.92170 0.99246 1.05360 1.18757 0.94917 0.93958 1.01915 1.20582 0.96698 0.95746 1.02733 1.23489 0.97052 0.96181 1.12749 1.19708 0.91457 1.04614 0.92376 1.23379 0.80502 0.74380 0.92088 1.90682 1.55611 1.46083 1.46317 1.86483 1.31585 1.76004 1.33461 1.23503 0.98507 1.01619 0.76775 1.21765 0.90592 1.00361 1.01912 1.19060 0.96595 0.97525 0.88201 1.21209 0.98770 1.43498 0.92384 0.92363 1.25043 0.98103 0.95628 0.95780 1.69981 1.37180 1.48746 0.97471 0.86487 0.84517 0.78579 0.78129 1.19664 1.20972 1.20967 1.84173 0.95964 1.09025 1.73194 0.90749 0.91270 0.90513 0.84397 0.90836 0.91361 0.91448 0.86851 0.85968 0.91534 0.91557 0.92141 0.92134 0.96236 0.96241 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.38 36.01 0.37 -0.19 16 2 C -0.18 -1.76 6.51 -36.00 -0.23 -1.99 16 3 C -0.14 -1.39 9.85 -41.21 -0.41 -1.79 16 4 C -0.08 -0.92 5.80 -106.25 -0.62 -1.54 16 5 C -0.10 -0.90 9.87 36.01 0.36 -0.54 16 6 C -0.18 -2.08 5.00 -36.00 -0.18 -2.26 16 7 C -0.04 -0.46 5.98 -29.04 -0.17 -0.63 16 8 C 0.46 6.97 7.95 36.01 0.29 7.26 16 9 O -0.50 -9.19 15.78 -18.75 -0.30 -9.49 16 10 O -0.36 -6.00 10.22 -39.24 -0.40 -6.40 16 11 C 0.07 1.29 5.47 37.16 0.20 1.50 16 12 C -0.11 -2.27 5.53 -26.73 -0.15 -2.42 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 18 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 S 0.11 1.22 23.31 -107.50 -2.51 -1.29 16 23 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.07 0.54 6.60 -51.93 -0.34 0.20 16 30 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.12 1.04 6.64 -51.93 -0.34 0.69 16 32 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 33 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 340.35 15.07 5.13 5.13 Total: -1.00 -32.60 340.35 -9.17 -41.77 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -5.72 Total: -4.41 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -1.09 Total: -15.68 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.74 Total: -26.24 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.70 Total: -15.89 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.51 Total: -1.29 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.60 -9.17 -41.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885100828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.573 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds