Wall clock time and date at job start Tue Mar 31 2020 05:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86795 * 120.00049 * 2 1 4 4 H 1.48494 * 109.47286 * 240.00397 * 3 2 1 5 5 H 1.48509 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47195 * 119.99953 * 3 2 1 7 7 C 1.38891 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99821 * 191.62929 * 7 2 1 9 9 N 1.37208 * 120.00320 * 11.63204 * 7 2 1 10 10 C 1.34784 * 119.99964 * 227.34799 * 9 7 2 11 11 O 1.21264 * 119.99771 * 180.02562 * 10 9 7 12 12 C 1.50694 * 120.00035 * 359.97438 * 10 9 7 13 13 C 1.53790 * 113.61487 * 279.13822 * 12 10 9 14 14 C 1.53949 * 87.01912 * 220.04734 * 13 12 10 15 15 F 1.39899 * 113.54039 * 270.81215 * 14 13 12 16 16 F 1.39896 * 113.66683 * 139.93012 * 14 13 12 17 17 C 1.53780 * 87.11417 * 25.36103 * 14 13 12 18 18 C 1.39426 * 120.00007 * 47.34542 * 9 7 2 19 19 C 1.39061 * 119.69665 * 12.81447 * 18 9 7 20 20 C 1.38383 * 119.09801 * 180.02562 * 19 18 9 21 21 C 1.38826 * 118.49253 * 359.97438 * 20 19 18 22 22 C 1.38149 * 119.31186 * 0.28024 * 21 20 19 23 23 N 1.31882 * 120.84911 * 359.40092 * 22 21 20 24 24 H 0.96996 * 120.00311 * 354.95197 * 1 2 3 25 25 H 1.09006 * 112.85172 * 50.32985 * 12 10 9 26 26 H 1.08993 * 113.61105 * 334.56743 * 13 12 10 27 27 H 1.08998 * 113.61265 * 105.47232 * 13 12 10 28 28 H 1.08999 * 113.61818 * 220.08931 * 17 14 13 29 29 H 1.08998 * 113.69171 * 89.19623 * 17 14 13 30 30 H 1.08002 * 120.45125 * 359.97438 * 19 18 9 31 31 H 1.08007 * 120.75350 * 180.02562 * 20 19 18 32 32 H 1.08005 * 120.34324 * 180.02562 * 21 20 19 33 33 H 1.07994 * 119.57053 * 179.70117 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1017 1.6964 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0085 -1.2029 -0.0005 8 1 3.0719 -1.2125 0.1880 9 7 1.3436 -2.3788 -0.2406 10 6 1.5451 -3.4428 0.5618 11 8 0.9578 -4.4823 0.3493 12 6 2.5009 -3.3411 1.7224 13 6 3.9763 -3.5086 1.3218 14 6 4.1490 -4.3331 2.6104 15 9 4.4903 -3.5612 3.7261 16 9 4.9692 -5.4554 2.4532 17 6 2.6471 -4.6498 2.5167 18 6 0.4596 -2.4731 -1.3147 19 6 0.4513 -1.4811 -2.2892 20 6 -0.4316 -1.5869 -3.3496 21 6 -1.2786 -2.6857 -3.3991 22 6 -1.2198 -3.6308 -2.3932 23 7 -0.3636 -3.5067 -1.3978 24 1 -0.4850 0.8367 0.0739 25 1 2.3149 -2.4686 2.3487 26 1 4.1179 -4.0887 0.4100 27 1 4.5374 -2.5741 1.3218 28 1 2.1368 -4.6353 3.4797 29 1 2.4234 -5.5424 1.9325 30 1 1.1241 -0.6392 -2.2191 31 1 -0.4604 -0.8321 -4.1216 32 1 -1.9791 -2.7983 -4.2134 33 1 -1.8801 -4.4848 -2.4250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472078.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:07 Heat of formation + Delta-G solvation = -56.968141 kcal Electronic energy + Delta-G solvation = -22398.229022 eV Core-core repulsion = 18675.337784 eV Total energy + Delta-G solvation = -3722.891238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.57620 -46.91493 -39.96642 -38.49996 -36.27435 -35.06616 -32.13912 -31.12549 -29.38963 -25.95441 -25.79597 -25.27025 -22.60034 -22.04712 -20.39669 -19.10653 -18.21442 -17.32549 -16.42283 -16.03824 -15.82606 -15.62171 -15.15211 -14.79039 -14.58992 -14.17458 -13.79826 -13.71333 -13.35286 -13.20879 -13.05563 -12.53154 -12.28313 -12.16294 -11.93606 -11.44447 -11.42378 -11.18659 -11.06304 -10.87618 -10.81480 -10.57339 -10.14665 -9.50279 -9.04475 -8.97912 -8.75608 -8.02696 -7.09263 -6.55125 -4.52888 2.16675 2.37726 2.98068 3.06371 3.07572 3.59036 3.70514 3.86209 4.06046 4.22955 4.54617 4.63288 4.80900 4.92042 5.19352 5.46197 5.65952 5.70005 5.79442 5.81604 5.93580 5.94091 6.00982 6.03650 6.28183 6.40068 6.54201 6.76076 7.01224 7.16104 7.18846 7.48083 7.86760 8.12945 8.76285 8.84495 9.24926 9.69708 10.39533 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015898 B = 0.007205 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.770927 B = 3885.417586 C = 5276.434351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.055 3.945 3 Si 0.917 3.083 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.381 5.381 10 C 0.503 3.497 11 O -0.522 6.522 12 C -0.104 4.104 13 C -0.143 4.143 14 C 0.250 3.750 15 F -0.182 7.182 16 F -0.195 7.195 17 C -0.145 4.145 18 C 0.392 3.608 19 C -0.152 4.152 20 C -0.076 4.076 21 C -0.237 4.237 22 C 0.111 3.889 23 N -0.494 5.494 24 H 0.277 0.723 25 H 0.127 0.873 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.162 -1.483 -0.364 4.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.155 4.155 3 Si 0.742 3.258 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.495 4.495 8 H 0.117 0.883 9 N -0.093 5.093 10 C 0.291 3.709 11 O -0.398 6.398 12 C -0.126 4.126 13 C -0.181 4.181 14 C 0.214 3.786 15 F -0.163 7.163 16 F -0.176 7.176 17 C -0.183 4.183 18 C 0.162 3.838 19 C -0.176 4.176 20 C -0.102 4.102 21 C -0.259 4.259 22 C -0.049 4.049 23 N -0.209 5.209 24 H 0.088 0.912 25 H 0.145 0.855 26 H 0.127 0.873 27 H 0.118 0.882 28 H 0.110 0.890 29 H 0.139 0.861 30 H 0.149 0.851 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.813 -2.532 0.258 4.585 hybrid contribution 0.317 1.838 -0.439 1.917 sum 4.130 -0.694 -0.181 4.192 Atomic orbital electron populations 1.69920 1.06293 1.28935 1.42014 1.25584 0.95326 1.00258 0.94381 0.86143 0.79415 0.80582 0.79666 1.19192 1.20545 1.19173 1.19356 0.93424 0.82242 1.54488 0.88318 1.41107 1.36267 1.11443 1.20447 1.20296 0.83375 0.84286 0.82929 1.90662 1.48617 1.29485 1.71023 1.22253 0.93954 0.99036 0.97320 1.23964 0.96608 1.01388 0.96146 1.22233 0.89966 0.80507 0.85942 1.92995 1.93606 1.74968 1.54689 1.92979 1.75766 1.53260 1.95580 1.24005 0.90700 1.00809 1.02806 1.18693 0.89358 0.89243 0.86501 1.21415 1.01668 1.00629 0.93859 1.21150 0.94969 0.96818 0.97248 1.21649 1.04024 0.98066 1.02151 1.22282 0.95093 0.97541 0.89934 1.67557 1.05572 1.23341 1.24464 0.91224 0.85482 0.87278 0.88179 0.88959 0.86126 0.85051 0.86592 0.86797 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.13 11.57 55.49 0.64 -20.49 16 2 C 0.06 1.28 3.60 -17.49 -0.06 1.22 16 3 Si 0.92 17.72 29.57 -169.99 -5.03 12.70 16 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.37 -8.49 7.53 -14.90 -0.11 -8.60 16 8 H 0.10 2.09 6.85 -52.49 -0.36 1.73 16 9 N -0.38 -9.29 2.70 -60.71 -0.16 -9.46 16 10 C 0.50 11.60 7.12 -10.99 -0.08 11.52 16 11 O -0.52 -13.22 14.25 5.57 0.08 -13.14 16 12 C -0.10 -1.90 2.99 -90.96 -0.27 -2.18 16 13 C -0.14 -2.23 6.82 -25.83 -0.18 -2.41 16 14 C 0.25 3.83 3.28 -25.83 -0.08 3.74 16 15 F -0.18 -2.85 17.38 2.25 0.04 -2.81 16 16 F -0.20 -3.07 17.41 2.25 0.04 -3.03 16 17 C -0.14 -2.31 7.19 -25.92 -0.19 -2.49 16 18 C 0.39 9.79 6.39 -154.64 -0.99 8.80 16 19 C -0.15 -3.45 7.79 -39.22 -0.31 -3.76 16 20 C -0.08 -1.48 10.17 -39.31 -0.40 -1.88 16 21 C -0.24 -4.40 10.11 -39.40 -0.40 -4.80 16 22 C 0.11 2.29 11.18 -17.56 -0.20 2.10 16 23 N -0.49 -12.27 8.00 -12.34 -0.10 -12.37 16 24 H 0.28 6.64 8.32 -40.82 -0.34 6.30 16 25 H 0.13 2.32 7.93 -51.93 -0.41 1.91 16 26 H 0.11 1.69 8.09 -51.93 -0.42 1.27 16 27 H 0.10 1.43 7.89 -51.93 -0.41 1.02 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.12 2.00 7.45 -51.93 -0.39 1.61 16 30 H 0.13 3.00 6.03 -52.49 -0.32 2.69 16 31 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 32 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 33 H 0.14 2.41 8.06 -52.49 -0.42 1.98 16 LS Contribution 291.21 15.07 4.39 4.39 Total: -1.00 -28.73 291.21 -6.49 -35.23 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -3.13 Total: 7.72 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -3.26 Total: 1.26 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.38 Total: -42.31 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.14 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.08 Total: -5.84 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.73 -6.49 -35.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472078.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.742 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds