Wall clock time and date at job start Tue Mar 31 2020 05:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99981 * 2 1 4 4 H 1.48505 * 109.46781 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47576 * 300.00082 * 3 2 1 6 6 H 1.48501 * 109.47082 * 60.00252 * 3 2 1 7 7 C 1.37875 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99848 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99911 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.43307 * 57.46320 * 9 7 2 11 11 C 1.54887 * 110.60391 * 294.84317 * 9 7 2 12 12 C 1.54888 * 102.74860 * 203.32470 * 11 9 7 13 13 C 1.54260 * 104.19508 * 37.94069 * 12 11 9 14 14 H 1.08996 * 110.07276 * 217.07746 * 13 12 11 15 15 N 1.46505 * 110.02933 * 95.67868 * 13 12 11 16 16 C 1.39348 * 120.00392 * 87.83372 * 15 13 12 17 17 C 1.39003 * 119.99356 * 359.97438 * 16 15 13 18 18 N 1.32134 * 120.02761 * 180.30462 * 17 16 15 19 19 C 1.32649 * 120.01897 * 359.44567 * 18 17 16 20 20 N 1.39414 * 120.01117 * 180.28056 * 19 18 17 21 21 C 1.39187 * 119.98244 * 0.55394 * 19 18 17 22 22 Cl 1.73599 * 120.01690 * 179.75073 * 21 19 18 23 23 N 1.32187 * 119.96842 * 359.72128 * 21 19 18 24 24 C 1.53870 * 106.60366 * 336.39138 * 13 12 11 25 25 H 0.96998 * 119.99984 * 359.97438 * 1 2 3 26 26 H 1.09001 * 110.75397 * 321.64352 * 11 9 7 27 27 H 1.09001 * 110.75429 * 85.00753 * 11 9 7 28 28 H 1.08996 * 110.48584 * 279.26217 * 12 11 9 29 29 H 1.09002 * 110.48389 * 156.62303 * 12 11 9 30 30 H 0.97007 * 119.99624 * 267.82883 * 15 13 12 31 31 H 1.08002 * 119.98151 * 0.02562 * 17 16 15 32 32 H 0.97001 * 119.99890 * 180.27001 * 20 19 18 33 33 H 0.96995 * 119.99788 * 0.27380 * 20 19 18 34 34 H 1.08994 * 110.03424 * 119.28526 * 24 13 12 35 35 H 1.09000 * 110.03256 * 240.72049 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5845 -2.5538 -0.8614 11 6 0.4514 -2.6669 1.3154 12 6 0.2732 -4.2023 1.4137 13 6 1.6108 -4.7722 0.8980 14 1 1.4332 -5.6798 0.3213 15 7 2.5012 -5.0606 2.0251 16 6 2.4435 -6.3001 2.6593 17 6 1.5407 -7.2626 2.2227 18 7 1.4812 -8.4360 2.8274 19 6 2.2907 -8.7001 3.8445 20 7 2.2319 -9.9403 4.4786 21 6 3.1950 -7.7368 4.2822 22 17 4.2503 -8.0793 5.6173 23 7 3.2502 -6.5612 3.6803 24 6 2.2325 -3.6893 -0.0012 25 1 -0.4850 0.8400 0.0004 26 1 1.0211 -2.2889 2.1643 27 1 -0.5160 -2.1694 1.2457 28 1 -0.5510 -4.5320 0.7813 29 1 0.1047 -4.5013 2.4483 30 1 3.1310 -4.3887 2.3299 31 1 0.8844 -7.0496 1.3918 32 1 2.8212 -10.1319 5.2249 33 1 1.6017 -10.6116 4.1735 34 1 3.1966 -3.3784 0.4009 35 1 2.3557 -4.0711 -1.0147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894041815.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:18 Heat of formation + Delta-G solvation = 38.289116 kcal Electronic energy + Delta-G solvation = -19404.334337 eV Core-core repulsion = 16269.663195 eV Total energy + Delta-G solvation = -3134.671142 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.04983 -38.13951 -36.85187 -35.70227 -33.68456 -33.45283 -31.98791 -28.44511 -28.25974 -26.63105 -24.91100 -23.82162 -22.83055 -19.77490 -19.43590 -18.31600 -17.63217 -17.31054 -16.40036 -15.77933 -15.53131 -15.23031 -14.67007 -14.57176 -14.13051 -13.87562 -12.82369 -12.69529 -12.33631 -12.22076 -11.74276 -11.60549 -11.46282 -11.06531 -11.00388 -10.87150 -10.54532 -10.38407 -10.35879 -10.07673 -9.65683 -9.34668 -9.20865 -9.15858 -8.84691 -8.39913 -7.10640 -6.04688 -4.07502 0.81660 1.40125 1.61931 3.19692 3.27783 3.36512 3.39518 3.42246 3.74615 4.28840 4.41627 4.66082 4.86966 5.06747 5.26136 5.33987 5.50123 5.62046 5.86155 6.19311 6.30184 6.44319 6.56970 6.63989 6.76788 6.87695 7.00346 7.17576 7.21478 7.26910 7.63975 7.66220 7.80596 7.83490 7.97627 8.07719 8.38993 8.95230 9.57106 11.04750 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032228 B = 0.003515 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.598062 B = 7963.473108 C = 8502.028648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.048 3.952 10 H 0.034 0.966 11 C -0.098 4.098 12 C -0.146 4.146 13 C 0.147 3.853 14 H 0.071 0.929 15 N -0.699 5.699 16 C 0.336 3.664 17 C 0.041 3.959 18 N -0.447 5.447 19 C 0.306 3.694 20 N -0.850 5.850 21 C 0.117 3.883 22 Cl -0.033 7.033 23 N -0.470 5.470 24 C -0.122 4.122 25 H 0.259 0.741 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.408 0.592 31 H 0.175 0.825 32 H 0.407 0.593 33 H 0.405 0.595 34 H 0.064 0.936 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 -17.619 7.243 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.030 3.970 10 H 0.052 0.948 11 C -0.137 4.137 12 C -0.185 4.185 13 C 0.043 3.957 14 H 0.089 0.911 15 N -0.333 5.333 16 C 0.095 3.905 17 C -0.128 4.128 18 N -0.168 5.168 19 C 0.066 3.934 20 N -0.399 5.399 21 C -0.058 4.058 22 Cl -0.005 7.005 23 N -0.195 5.195 24 C -0.160 4.160 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.245 0.755 31 H 0.192 0.808 32 H 0.238 0.762 33 H 0.234 0.766 34 H 0.083 0.917 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.187 -17.446 7.175 19.131 hybrid contribution 0.807 0.975 0.522 1.369 sum 3.993 -16.471 7.696 18.614 Atomic orbital electron populations 1.69960 1.05866 1.26387 1.50468 1.24974 0.94834 0.99047 0.95047 0.86598 0.80193 0.84027 0.77549 1.19811 1.21087 1.21092 1.21202 0.92735 0.90463 1.50850 0.92631 1.19476 0.92390 0.91140 0.94038 0.94810 1.22437 1.01421 0.90162 0.99644 1.23003 0.95621 1.00165 0.99667 1.21909 0.89984 0.98235 0.85601 0.91129 1.44979 1.42291 1.11526 1.34511 1.19048 0.91987 0.89225 0.90205 1.23015 1.00089 0.88252 1.01478 1.67900 1.21402 1.20496 1.07047 1.18429 0.93413 0.88346 0.93250 1.41982 1.46307 1.12856 1.38769 1.21533 0.96738 0.91714 0.95804 1.98373 1.65276 1.93450 1.43409 1.66973 1.24474 1.19090 1.08968 1.22605 1.00688 0.95752 0.96956 0.93114 0.93366 0.91405 0.91717 0.92871 0.75529 0.80773 0.76166 0.76584 0.91694 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.75 12.29 55.43 0.68 -24.07 16 2 C 0.06 1.69 5.35 -17.82 -0.10 1.59 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.51 -13.41 8.47 -34.44 -0.29 -13.71 16 8 H 0.06 1.44 7.54 -52.49 -0.40 1.04 16 9 C 0.05 1.10 2.71 -90.11 -0.24 0.86 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.10 -2.12 5.75 -24.74 -0.14 -2.27 16 12 C -0.15 -2.46 6.54 -25.08 -0.16 -2.63 16 13 C 0.15 2.28 2.93 -66.82 -0.20 2.09 16 14 H 0.07 0.95 6.42 -51.93 -0.33 0.61 16 15 N -0.70 -10.65 5.22 -52.71 -0.27 -10.93 16 16 C 0.34 5.06 7.67 -154.46 -1.18 3.87 16 17 C 0.04 0.56 10.38 -17.14 -0.18 0.38 16 18 N -0.45 -6.11 10.52 -11.99 -0.13 -6.24 16 19 C 0.31 3.90 7.77 -154.38 -1.20 2.70 16 20 N -0.85 -7.58 9.05 31.26 0.28 -7.30 16 21 C 0.12 1.61 7.31 -17.05 -0.12 1.49 16 22 Cl -0.03 -0.37 27.76 -51.86 -1.44 -1.81 16 23 N -0.47 -7.33 10.51 -9.17 -0.10 -7.43 16 24 C -0.12 -2.23 6.13 -25.61 -0.16 -2.39 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 26 H 0.05 1.10 8.05 -51.93 -0.42 0.68 16 27 H 0.07 1.62 7.56 -51.93 -0.39 1.23 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.88 8.04 -51.93 -0.42 0.46 16 30 H 0.41 6.43 8.45 -40.82 -0.34 6.08 16 31 H 0.18 2.09 6.21 -52.49 -0.33 1.77 16 32 H 0.41 2.94 7.49 -40.82 -0.31 2.63 16 33 H 0.40 2.94 8.96 -40.82 -0.37 2.57 16 34 H 0.06 1.21 7.13 -51.93 -0.37 0.84 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 305.81 15.07 4.61 4.61 Total: -1.00 -28.34 305.81 -9.44 -37.77 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -4.07 Total: 7.58 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -3.98 Total: -8.01 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.47 Total: -55.95 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.44 Total: -1.81 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.34 -9.44 -37.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894041815.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.060 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds