Wall clock time and date at job start Tue Mar 31 2020 05:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99981 * 2 1 4 4 H 1.48505 * 109.46781 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47576 * 300.00082 * 3 2 1 6 6 H 1.48501 * 109.47082 * 60.00252 * 3 2 1 7 7 C 1.37875 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99848 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99911 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.43307 * 57.46320 * 9 7 2 11 11 C 1.54887 * 110.60391 * 294.84317 * 9 7 2 12 12 C 1.54888 * 102.74860 * 203.32470 * 11 9 7 13 13 C 1.54260 * 104.19508 * 37.94069 * 12 11 9 14 14 H 1.08996 * 110.07276 * 217.07746 * 13 12 11 15 15 N 1.46505 * 110.02933 * 95.67868 * 13 12 11 16 16 C 1.39348 * 120.00392 * 87.83372 * 15 13 12 17 17 C 1.39003 * 119.99356 * 359.97438 * 16 15 13 18 18 N 1.32134 * 120.02761 * 180.30462 * 17 16 15 19 19 C 1.32649 * 120.01897 * 359.44567 * 18 17 16 20 20 N 1.39414 * 120.01117 * 180.28056 * 19 18 17 21 21 C 1.39187 * 119.98244 * 0.55394 * 19 18 17 22 22 Cl 1.73599 * 120.01690 * 179.75073 * 21 19 18 23 23 N 1.32187 * 119.96842 * 359.72128 * 21 19 18 24 24 C 1.53870 * 106.60366 * 336.39138 * 13 12 11 25 25 H 0.96998 * 119.99984 * 359.97438 * 1 2 3 26 26 H 1.09001 * 110.75397 * 321.64352 * 11 9 7 27 27 H 1.09001 * 110.75429 * 85.00753 * 11 9 7 28 28 H 1.08996 * 110.48584 * 279.26217 * 12 11 9 29 29 H 1.09002 * 110.48389 * 156.62303 * 12 11 9 30 30 H 0.97007 * 119.99624 * 267.82883 * 15 13 12 31 31 H 1.08002 * 119.98151 * 0.02562 * 17 16 15 32 32 H 0.97001 * 119.99890 * 180.27001 * 20 19 18 33 33 H 0.96995 * 119.99788 * 0.27380 * 20 19 18 34 34 H 1.08994 * 110.03424 * 119.28526 * 24 13 12 35 35 H 1.09000 * 110.03256 * 240.72049 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5845 -2.5538 -0.8614 11 6 0.4514 -2.6669 1.3154 12 6 0.2732 -4.2023 1.4137 13 6 1.6108 -4.7722 0.8980 14 1 1.4332 -5.6798 0.3213 15 7 2.5012 -5.0606 2.0251 16 6 2.4435 -6.3001 2.6593 17 6 1.5407 -7.2626 2.2227 18 7 1.4812 -8.4360 2.8274 19 6 2.2907 -8.7001 3.8445 20 7 2.2319 -9.9403 4.4786 21 6 3.1950 -7.7368 4.2822 22 17 4.2503 -8.0793 5.6173 23 7 3.2502 -6.5612 3.6803 24 6 2.2325 -3.6893 -0.0012 25 1 -0.4850 0.8400 0.0004 26 1 1.0211 -2.2889 2.1643 27 1 -0.5160 -2.1694 1.2457 28 1 -0.5510 -4.5320 0.7813 29 1 0.1047 -4.5013 2.4483 30 1 3.1310 -4.3887 2.3299 31 1 0.8844 -7.0496 1.3918 32 1 2.8212 -10.1319 5.2249 33 1 1.6017 -10.6116 4.1735 34 1 3.1966 -3.3784 0.4009 35 1 2.3557 -4.0711 -1.0147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894041815.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:18 Heat of formation + Delta-G solvation = 20.011489 kcal Electronic energy + Delta-G solvation = -19405.126914 eV Core-core repulsion = 16269.663195 eV Total energy + Delta-G solvation = -3135.463720 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.08511 -39.51114 -37.82448 -36.81811 -35.15029 -34.42745 -33.68001 -29.94329 -29.62236 -27.97636 -26.20094 -25.40146 -23.92678 -21.15092 -21.04471 -19.43598 -18.76360 -18.46516 -18.06582 -16.78236 -16.68133 -16.49663 -16.28425 -15.76078 -15.58765 -15.06392 -14.43425 -14.09963 -13.60822 -13.37473 -13.29117 -12.95492 -12.73809 -12.63431 -12.41951 -12.36960 -12.22780 -11.99065 -11.61202 -11.39410 -11.29650 -11.03492 -10.77391 -10.43905 -10.30327 -10.22613 -8.13369 -8.08723 -6.17488 -0.21269 0.35668 0.64754 1.40007 1.43327 1.52994 2.14892 2.44766 2.47513 2.70509 3.22138 3.29043 3.65352 3.81865 3.98037 4.05686 4.10806 4.30110 4.74813 4.80542 4.90314 4.98881 5.13215 5.17592 5.25074 5.38149 5.50578 5.69654 5.78715 5.96202 6.04713 6.13180 6.34673 6.42576 6.53869 6.84344 6.94447 7.09646 7.49735 8.99066 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032228 B = 0.003515 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.598062 B = 7963.473108 C = 8502.028648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.039 3.961 10 H 0.008 0.992 11 C -0.092 4.092 12 C -0.132 4.132 13 C 0.162 3.838 14 H 0.104 0.896 15 N -0.704 5.704 16 C 0.319 3.681 17 C 0.046 3.954 18 N -0.457 5.457 19 C 0.311 3.689 20 N -0.832 5.832 21 C 0.098 3.902 22 Cl -0.016 7.016 23 N -0.490 5.490 24 C -0.113 4.113 25 H 0.258 0.742 26 H 0.027 0.973 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.402 0.598 31 H 0.193 0.807 32 H 0.417 0.583 33 H 0.415 0.585 34 H 0.059 0.941 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.921 -19.591 7.618 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.565 4.565 8 H 0.070 0.930 9 C 0.020 3.980 10 H 0.026 0.974 11 C -0.130 4.130 12 C -0.171 4.171 13 C 0.058 3.942 14 H 0.122 0.878 15 N -0.338 5.338 16 C 0.080 3.920 17 C -0.123 4.123 18 N -0.179 5.179 19 C 0.070 3.930 20 N -0.382 5.382 21 C -0.077 4.077 22 Cl 0.012 6.988 23 N -0.215 5.215 24 C -0.151 4.151 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.238 0.762 31 H 0.210 0.790 32 H 0.249 0.751 33 H 0.247 0.753 34 H 0.077 0.923 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.753 -19.478 7.576 21.233 hybrid contribution 0.657 1.495 0.483 1.703 sum 4.410 -17.983 8.059 20.193 Atomic orbital electron populations 1.70078 1.07061 1.26896 1.51723 1.25697 0.95595 1.02163 0.95181 0.85684 0.79258 0.80423 0.77359 1.19174 1.20813 1.21112 1.21624 0.92885 0.92147 1.49879 0.92957 1.19458 0.93031 0.92011 0.93495 0.97404 1.22198 0.99040 0.93650 0.98158 1.22894 0.97327 0.96223 1.00649 1.21692 0.88609 0.98444 0.85487 0.87798 1.44822 1.42420 1.11777 1.34805 1.19112 0.92879 0.89316 0.90742 1.23280 0.99566 0.87877 1.01550 1.67988 1.21856 1.20503 1.07568 1.18640 0.92525 0.89109 0.92762 1.41994 1.46178 1.11712 1.38278 1.21769 0.97695 0.91645 0.96568 1.98372 1.64755 1.93276 1.42421 1.66918 1.25006 1.20118 1.09421 1.22426 0.99167 0.94825 0.98682 0.93289 0.95393 0.94600 0.90078 0.92204 0.76179 0.78992 0.75062 0.75315 0.92280 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.52 12.29 21.45 0.26 -52.26 16 2 C 0.01 0.67 5.35 84.65 0.45 1.12 16 3 Si 0.95 43.34 29.54 68.60 2.03 45.36 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.53 -27.98 8.47 25.60 0.22 -27.76 16 8 H 0.05 2.74 7.54 -2.91 -0.02 2.72 16 9 C 0.04 1.80 2.71 -10.46 -0.03 1.77 16 10 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 11 C -0.09 -4.06 5.75 31.88 0.18 -3.88 16 12 C -0.13 -4.29 6.54 31.67 0.21 -4.08 16 13 C 0.16 4.70 2.93 45.71 0.13 4.84 16 14 H 0.10 2.40 6.42 -2.39 -0.02 2.38 16 15 N -0.70 -20.42 5.22 -320.69 -1.67 -22.10 16 16 C 0.32 9.04 7.67 132.82 1.02 10.06 16 17 C 0.05 1.14 10.38 84.83 0.88 2.02 16 18 N -0.46 -11.30 10.52 -191.85 -2.02 -13.32 16 19 C 0.31 7.19 7.77 132.86 1.03 8.22 16 20 N -0.83 -12.54 9.05 -55.00 -0.50 -13.03 16 21 C 0.10 2.52 7.31 84.87 0.62 3.14 16 22 Cl -0.02 -0.34 27.76 -2.72 -0.08 -0.41 16 23 N -0.49 -14.61 10.51 -182.91 -1.92 -16.53 16 24 C -0.11 -4.02 6.13 31.32 0.19 -3.83 16 25 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 26 H 0.03 1.30 8.05 -2.39 -0.02 1.28 16 27 H 0.04 1.77 7.56 -2.39 -0.02 1.75 16 28 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.06 1.88 8.04 -2.39 -0.02 1.86 16 30 H 0.40 12.44 8.45 -92.70 -0.78 11.66 16 31 H 0.19 3.93 6.21 -2.91 -0.02 3.91 16 32 H 0.42 4.87 7.49 -92.71 -0.69 4.18 16 33 H 0.42 4.79 8.96 -92.71 -0.83 3.96 16 34 H 0.06 2.17 7.13 -2.39 -0.02 2.15 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -61.68 305.81 -0.13 -61.81 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -1.14 Total: 18.85 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 4.91 Total: -8.37 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -5.85 Total: -117.24 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.41 kcal Total: -61.68 -0.13 -61.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894041815.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.821 kcal (2) G-P(sol) polarization free energy of solvation -61.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds