Wall clock time and date at job start Tue Mar 31 2020 05:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00085 * 2 1 4 4 H 1.48497 * 109.46966 * 269.99437 * 3 2 1 5 5 H 1.48491 * 109.47382 * 29.99533 * 3 2 1 6 6 H 1.48502 * 109.47307 * 149.99722 * 3 2 1 7 7 C 1.37875 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00109 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00375 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.53594 * 59.90371 * 9 7 2 11 11 C 1.53116 * 109.50568 * 180.02562 * 9 7 2 12 12 C 1.53119 * 109.16307 * 177.59872 * 11 9 7 13 13 C 1.53041 * 109.27486 * 302.34492 * 12 11 9 14 14 N 1.46841 * 109.52407 * 59.18024 * 13 12 11 15 15 C 1.39356 * 111.00214 * 174.16063 * 14 13 12 16 16 C 1.38997 * 119.99198 * 56.04236 * 15 14 13 17 17 N 1.32144 * 120.02978 * 179.97438 * 16 15 14 18 18 C 1.32644 * 120.01353 * 359.97438 * 17 16 15 19 19 N 1.39414 * 120.00984 * 179.97438 * 18 17 16 20 20 C 1.39184 * 119.98824 * 0.02562 * 18 17 16 21 21 Cl 1.73598 * 120.01882 * 180.02562 * 20 18 17 22 22 N 1.32195 * 119.96819 * 359.97438 * 20 18 17 23 23 C 1.46853 * 111.19951 * 298.25820 * 14 13 12 24 24 H 0.96996 * 119.99663 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.52276 * 57.69107 * 11 9 7 26 26 H 1.09006 * 109.52678 * 297.50083 * 11 9 7 27 27 H 1.08995 * 109.50542 * 182.40304 * 12 11 9 28 28 H 1.08997 * 109.50844 * 62.28234 * 12 11 9 29 29 H 1.08995 * 109.46089 * 299.16358 * 13 12 11 30 30 H 1.08999 * 109.45276 * 179.19177 * 13 12 11 31 31 H 1.08003 * 119.98565 * 0.26102 * 16 15 14 32 32 H 0.97000 * 119.99864 * 359.97438 * 19 18 17 33 33 H 0.96995 * 120.00302 * 180.02562 * 19 18 17 34 34 H 1.08994 * 109.46263 * 181.76355 * 23 14 13 35 35 H 1.09005 * 109.45665 * 301.73082 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8757 -0.6788 0.8899 11 6 4.0227 -2.6374 0.0010 12 6 5.5527 -2.6288 -0.0590 13 6 6.0050 -1.8699 -1.3087 14 7 5.4913 -0.4951 -1.2607 15 6 5.9926 0.2625 -2.3175 16 6 5.8090 -0.1649 -3.6273 17 7 6.2836 0.5532 -4.6300 18 6 6.9351 1.6827 -4.3870 19 7 7.4363 2.4400 -5.4449 20 6 7.1194 2.1113 -3.0757 21 17 7.9715 3.5898 -2.7569 22 7 6.6444 1.3925 -2.0731 23 6 4.0230 -0.4768 -1.2502 24 1 -0.4849 0.8400 -0.0004 25 1 3.6271 -3.1639 -0.8675 26 1 3.6968 -3.1395 0.9120 27 1 5.9210 -3.6537 -0.1024 28 1 5.9490 -2.1364 0.8290 29 1 5.6198 -2.3707 -2.1969 30 1 7.0941 -1.8496 -1.3467 31 1 5.2741 -1.0820 -3.8258 32 1 7.3088 2.1406 -6.3587 33 1 7.9130 3.2657 -5.2671 34 1 3.6726 0.5553 -1.2461 35 1 3.6472 -0.9843 -2.1388 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894487385.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:15 Heat of formation + Delta-G solvation = 58.964039 kcal Electronic energy + Delta-G solvation = -20228.629020 eV Core-core repulsion = 17094.854410 eV Total energy + Delta-G solvation = -3133.774610 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.30505 -38.64140 -36.86316 -35.60598 -33.63363 -33.46884 -32.25410 -30.38520 -28.32843 -25.11031 -24.78809 -24.37085 -22.39148 -21.40236 -19.19542 -18.37165 -17.79098 -17.26506 -16.65726 -15.81501 -15.48887 -15.38837 -14.59974 -14.29952 -14.03762 -13.70291 -13.06650 -13.00734 -12.56302 -12.41629 -12.29457 -11.70266 -11.51052 -11.41587 -11.23315 -11.10528 -10.52322 -10.43392 -10.28667 -9.99763 -9.74136 -9.64700 -9.19140 -9.06863 -8.58559 -8.10169 -7.93141 -6.11374 -4.11580 0.65356 1.10642 1.58602 3.03640 3.26717 3.40390 3.50879 3.51994 3.65848 4.10704 4.39716 4.54297 4.91596 4.97750 5.21799 5.28871 5.40151 5.57408 5.73510 5.82908 6.10142 6.16498 6.21875 6.33730 6.52424 6.60426 6.67876 6.73619 6.92977 7.14833 7.20254 7.23319 7.56308 7.66460 7.74999 7.85567 8.49366 8.93482 9.51046 11.01173 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.006081 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.059068 B = 4603.223089 C = 5313.918612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.874 3.126 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.252 1.252 7 C -0.514 4.514 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.040 0.960 11 C -0.103 4.103 12 C -0.117 4.117 13 C 0.070 3.930 14 N -0.494 5.494 15 C 0.229 3.771 16 C 0.085 3.915 17 N -0.477 5.477 18 C 0.365 3.635 19 N -0.838 5.838 20 C 0.075 3.925 21 Cl -0.029 7.029 22 N -0.382 5.382 23 C 0.063 3.937 24 H 0.264 0.736 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.177 0.823 32 H 0.409 0.591 33 H 0.412 0.588 34 H 0.061 0.939 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.523 2.106 -9.606 19.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.177 1.177 7 C -0.552 4.552 8 H 0.095 0.905 9 C 0.001 3.999 10 H 0.058 0.942 11 C -0.140 4.140 12 C -0.155 4.155 13 C -0.057 4.057 14 N -0.218 5.218 15 C -0.004 4.004 16 C -0.080 4.080 17 N -0.201 5.201 18 C 0.123 3.877 19 N -0.385 5.385 20 C -0.101 4.101 21 Cl -0.001 7.001 22 N -0.098 5.098 23 C -0.062 4.062 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.194 0.806 32 H 0.239 0.761 33 H 0.244 0.756 34 H 0.079 0.921 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 16.579 2.545 -9.084 19.075 hybrid contribution 0.247 1.157 -1.044 1.577 sum 16.826 3.702 -10.127 19.984 Atomic orbital electron populations 1.69889 1.06258 1.27035 1.50297 1.25024 0.94684 0.98942 0.94283 0.87040 0.80804 0.83752 0.78064 1.21150 1.22183 1.17651 1.21030 0.88470 0.94547 1.51163 0.90458 1.19216 0.96068 0.91937 0.92701 0.94214 1.21518 0.92389 0.98760 1.01359 1.21655 0.98153 0.98354 0.97323 1.22114 0.98827 0.86211 0.98568 1.58786 1.11066 1.11609 1.40290 1.20266 0.98012 0.92225 0.89937 1.24213 0.95194 0.99514 0.89104 1.67999 1.12328 1.04663 1.35067 1.18781 0.92074 0.90023 0.86794 1.42238 1.62908 1.26811 1.06495 1.21783 1.05412 0.94410 0.88528 1.98377 1.74755 1.30799 1.96142 1.67172 1.04659 1.04257 1.33752 1.23001 0.80464 1.01180 1.01511 0.92579 0.92804 0.92148 0.92009 0.91266 0.94438 0.91489 0.80624 0.76099 0.75625 0.92082 0.94145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 2 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 3 Si 0.87 22.48 24.37 -169.99 -4.14 18.34 16 4 H -0.28 -7.29 6.88 56.52 0.39 -6.90 16 5 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 6 H -0.25 -6.43 6.53 56.52 0.37 -6.06 16 7 C -0.51 -14.03 9.14 -34.44 -0.31 -14.35 16 8 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.02 0.46 1.85 -91.70 -0.17 0.29 16 10 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 11 C -0.10 -1.91 5.22 -26.61 -0.14 -2.05 16 12 C -0.12 -1.79 6.09 -26.65 -0.16 -1.95 16 13 C 0.07 1.06 5.05 -3.84 -0.02 1.04 16 14 N -0.49 -9.32 4.71 -173.08 -0.82 -10.13 16 15 C 0.23 4.10 5.70 -154.45 -0.88 3.22 16 16 C 0.08 1.31 9.90 -17.14 -0.17 1.14 16 17 N -0.48 -7.02 10.52 -11.99 -0.13 -7.15 16 18 C 0.36 4.98 7.77 -154.39 -1.20 3.78 16 19 N -0.84 -7.71 9.05 31.26 0.28 -7.43 16 20 C 0.08 1.16 7.31 -17.04 -0.12 1.03 16 21 Cl -0.03 -0.36 27.76 -51.86 -1.44 -1.80 16 22 N -0.38 -7.01 10.51 -9.16 -0.10 -7.11 16 23 C 0.06 1.37 3.97 -3.83 -0.02 1.35 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.04 0.52 7.14 -51.93 -0.37 0.15 16 30 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 31 H 0.18 2.35 7.11 -52.48 -0.37 1.98 16 32 H 0.41 2.98 8.96 -40.82 -0.37 2.61 16 33 H 0.41 3.04 7.49 -40.82 -0.31 2.73 16 34 H 0.06 1.48 3.28 -51.93 -0.17 1.31 16 35 H 0.04 0.84 7.77 -51.93 -0.40 0.43 16 LS Contribution 294.76 15.07 4.44 4.44 Total: -1.00 -31.76 294.76 -8.49 -40.25 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.07 Total: 1.53 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -3.29 Total: -4.50 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.02 Total: -58.28 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.14 Total: 18.34 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.44 Total: -1.80 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.76 -8.49 -40.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894487385.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.215 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds