Wall clock time and date at job start Tue Mar 31 2020 05:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99889 * 2 1 4 4 H 1.48495 * 109.47247 * 240.00239 * 3 2 1 5 5 H 1.48508 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47141 * 120.00098 * 3 2 1 7 7 C 1.37878 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00112 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99532 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46692 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47437 * 180.02562 * 11 10 9 13 13 C 1.34773 * 120.00170 * 180.02562 * 12 11 10 14 14 S 1.71197 * 120.00161 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99676 * 179.97438 * 13 12 11 16 16 C 1.39883 * 119.99531 * 185.53780 * 15 13 12 17 17 C 1.38914 * 120.06041 * 41.89545 * 16 15 13 18 18 C 1.38098 * 119.97908 * 180.02562 * 17 16 15 19 19 C 1.38268 * 120.09543 * 359.97438 * 18 17 16 20 20 C 1.38492 * 120.11765 * 0.02562 * 19 18 17 21 21 F 1.35108 * 119.99000 * 180.02562 * 20 19 18 22 22 C 1.38345 * 120.01975 * 359.97438 * 20 19 18 23 23 H 0.97004 * 120.00650 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.47208 * 60.00114 * 9 7 2 25 25 H 1.08998 * 109.47008 * 299.99517 * 9 7 2 26 26 H 1.09005 * 109.46943 * 60.00268 * 10 9 7 27 27 H 1.08994 * 109.47375 * 300.00433 * 10 9 7 28 28 H 1.08997 * 109.47076 * 60.00189 * 11 10 9 29 29 H 1.09003 * 109.47456 * 300.00202 * 11 10 9 30 30 H 0.97005 * 119.99271 * 0.02562 * 12 11 10 31 31 H 0.96992 * 119.99900 * 5.54100 * 15 13 12 32 32 H 1.07997 * 120.01188 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.95541 * 180.02562 * 18 17 16 34 34 H 1.08009 * 119.94308 * 179.97438 * 19 18 17 35 35 H 1.08005 * 120.04875 * 180.27508 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7466 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4804 -4.9870 -0.0012 12 7 2.4324 -6.1006 -0.0018 13 6 1.9832 -7.3712 -0.0019 14 16 0.3000 -7.6841 -0.0020 15 7 2.8591 -8.3956 -0.0030 16 6 2.3970 -9.7107 -0.1200 17 6 1.3832 -10.0146 -1.0198 18 6 0.9279 -11.3134 -1.1335 19 6 1.4801 -12.3125 -0.3534 20 6 2.4910 -12.0140 0.5449 21 9 3.0291 -12.9924 1.3056 22 6 2.9508 -10.7146 0.6628 23 1 -0.4851 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8727 -3.6046 0.8878 27 1 2.8713 -3.6038 -0.8922 28 1 0.8528 -5.0447 -0.8905 29 1 0.8547 -5.0450 0.8895 30 1 3.3861 -5.9232 -0.0021 31 1 3.8097 -8.2209 0.0774 32 1 0.9506 -9.2352 -1.6295 33 1 0.1399 -11.5492 -1.8335 34 1 1.1218 -13.3274 -0.4441 35 1 3.7422 -10.4821 1.3600 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899467134.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:01 Heat of formation + Delta-G solvation = -11.169433 kcal Electronic energy + Delta-G solvation = -18294.742875 eV Core-core repulsion = 15140.050794 eV Total energy + Delta-G solvation = -3154.692081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.10820 -40.30971 -38.32948 -35.86327 -33.68974 -31.70083 -30.93717 -29.66571 -26.96395 -24.52587 -23.53965 -22.85851 -22.35805 -20.63614 -18.88787 -18.41072 -16.79275 -16.54859 -16.48275 -16.19866 -15.79783 -15.41634 -15.29583 -14.77052 -14.45811 -14.10513 -14.00255 -13.23200 -12.70485 -12.41218 -12.19315 -11.98735 -11.79520 -11.57690 -11.17356 -10.97116 -10.93099 -10.68352 -10.18410 -9.79383 -9.62131 -9.24863 -9.14363 -8.69687 -8.44251 -7.83710 -7.14770 -6.08495 -4.12734 0.63734 0.98826 1.43093 1.84946 2.39134 3.26949 3.30932 3.32685 3.34444 3.38593 4.06659 4.37901 4.48644 4.69684 4.87951 5.01640 5.13233 5.27181 5.31982 5.55598 5.64492 5.77477 5.84547 5.92685 5.99077 6.17153 6.25394 6.37031 6.48403 6.62550 6.76250 6.84997 7.12890 7.53683 7.64497 7.88470 8.28017 8.93196 9.51919 11.02514 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.051238 B = 0.002576 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.335195 B =10867.806015 C =11209.748735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.027 3.973 10 C -0.123 4.123 11 C 0.116 3.884 12 N -0.663 5.663 13 C 0.551 3.449 14 S -0.617 6.617 15 N -0.644 5.644 16 C 0.167 3.833 17 C -0.081 4.081 18 C -0.083 4.083 19 C -0.152 4.152 20 C 0.100 3.900 21 F -0.140 7.140 22 C -0.165 4.165 23 H 0.263 0.737 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.398 0.602 31 H 0.407 0.593 32 H 0.151 0.849 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.046 -22.627 -1.692 24.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.161 4.161 11 C -0.006 4.006 12 N -0.287 5.287 13 C 0.192 3.808 14 S -0.488 6.488 15 N -0.271 5.271 16 C 0.073 3.927 17 C -0.104 4.104 18 C -0.103 4.103 19 C -0.172 4.172 20 C 0.080 3.920 21 F -0.119 7.119 22 C -0.187 4.187 23 H 0.073 0.927 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.234 0.766 31 H 0.245 0.755 32 H 0.169 0.831 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.652 -22.532 -1.656 23.552 hybrid contribution 2.357 1.182 0.378 2.664 sum 9.010 -21.350 -1.279 23.208 Atomic orbital electron populations 1.69944 1.06041 1.26972 1.49983 1.25017 0.94864 0.99309 0.95129 0.86639 0.79579 0.83085 0.78574 1.20238 1.21175 1.20251 1.21111 0.92876 0.90875 1.51681 0.92763 1.19006 0.93669 0.90388 0.98038 1.21983 1.00058 0.93089 1.00990 1.22270 0.91059 0.82521 1.04730 1.45569 1.11592 1.03814 1.67756 1.22430 0.95468 0.82119 0.80775 1.93509 0.92227 1.90346 1.72708 1.42132 1.08959 1.03608 1.72432 1.16998 0.98062 0.81404 0.96234 1.21503 0.94836 0.97275 0.96766 1.20845 0.99354 0.91308 0.98800 1.21192 0.97281 1.01182 0.97496 1.17212 0.96106 0.84834 0.93846 1.91502 1.85096 1.61170 1.74145 1.20736 1.04692 0.91670 1.01562 0.92724 0.95960 0.95967 0.92641 0.92597 0.89280 0.89370 0.76563 0.75508 0.83142 0.84397 0.84687 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.18 9.11 -34.44 -0.31 -14.49 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.12 -2.17 5.27 -26.73 -0.14 -2.31 16 11 C 0.12 1.79 5.13 -4.04 -0.02 1.77 16 12 N -0.66 -7.78 5.56 -62.03 -0.34 -8.12 16 13 C 0.55 6.96 7.75 -86.92 -0.67 6.28 16 14 S -0.62 -10.50 25.06 -107.50 -2.69 -13.19 16 15 N -0.64 -5.99 5.33 -11.41 -0.06 -6.05 16 16 C 0.17 1.71 5.91 -83.72 -0.49 1.22 16 17 C -0.08 -0.88 7.86 -39.38 -0.31 -1.19 16 18 C -0.08 -0.74 10.04 -39.62 -0.40 -1.14 16 19 C -0.15 -1.31 10.02 -39.48 -0.40 -1.71 16 20 C 0.10 0.98 7.30 -39.45 -0.29 0.69 16 21 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 22 C -0.16 -1.54 9.95 -39.33 -0.39 -1.93 16 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.09 1.49 7.99 -51.93 -0.41 1.07 16 29 H 0.09 1.50 7.99 -51.93 -0.42 1.09 16 30 H 0.40 3.42 8.49 -40.82 -0.35 3.07 16 31 H 0.41 2.36 8.84 -40.82 -0.36 1.99 16 32 H 0.15 1.84 6.26 -49.84 -0.31 1.53 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 35 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 318.48 15.07 4.80 4.80 Total: -1.00 -32.26 318.48 -10.56 -42.82 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -4.35 Total: 1.38 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -3.66 Total: -10.77 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.33 Total: -39.58 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -10.50 SS G_CDS: -2.69 Total: -13.19 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.26 -10.56 -42.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899467134.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.650 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds