Wall clock time and date at job start Tue Mar 31 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47311 * 2 1 4 4 C 1.50705 * 109.47093 * 120.00119 * 2 1 3 5 5 O 1.20819 * 119.99886 * 95.00019 * 4 2 1 6 6 O 1.34232 * 119.99568 * 274.99854 * 4 2 1 7 7 C 1.45204 * 116.99633 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.46953 * 180.02562 * 7 6 4 9 9 C 1.50699 * 109.46737 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00130 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99870 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99882 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00048 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47314 * 59.99908 * 13 11 9 15 15 H 1.48504 * 109.46893 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47083 * 299.99422 * 13 11 9 17 17 C 1.50699 * 109.46970 * 239.99668 * 2 1 3 18 18 C 1.38250 * 119.97575 * 330.32833 * 17 2 1 19 19 C 1.38194 * 120.02377 * 180.27953 * 18 17 2 20 20 C 1.38460 * 119.97497 * 359.41202 * 19 18 17 21 21 F 1.35105 * 120.02800 * 180.30394 * 20 19 18 22 22 C 1.38467 * 119.94896 * 0.28520 * 20 19 18 23 23 C 1.38197 * 119.97188 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.47468 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46781 * 300.00028 * 1 2 3 26 26 H 1.08998 * 109.47354 * 59.99590 * 1 2 3 27 27 H 0.96695 * 114.00458 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47265 * 300.00153 * 7 6 4 29 29 H 1.09001 * 109.47145 * 59.99932 * 7 6 4 30 30 H 1.08994 * 109.47076 * 299.99728 * 8 7 6 31 31 H 1.08996 * 109.47411 * 60.00430 * 8 7 6 32 32 H 0.97001 * 120.00423 * 180.02562 * 12 11 9 33 33 H 1.07998 * 119.98560 * 359.97438 * 18 17 2 34 34 H 1.08002 * 120.01531 * 179.69754 * 19 18 17 35 35 H 1.07998 * 120.01314 * 180.02562 * 22 20 19 36 36 H 1.07994 * 119.98607 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.3197 -1.8827 1.1762 6 8 2.1606 -0.0408 2.3867 7 6 2.6496 -0.7889 3.5311 8 6 2.7278 0.1345 4.7484 9 6 3.2360 -0.6419 5.9359 10 1 3.4784 -1.6892 5.8327 11 6 3.3904 -0.0153 7.1544 12 7 3.0947 1.2600 7.2801 13 14 4.0196 -0.9778 8.6265 14 1 5.3708 -1.5153 8.3257 15 1 4.0956 -0.0815 9.8081 16 1 3.0930 -2.1015 8.9159 17 6 2.0323 -0.7105 -1.2304 18 6 1.2815 -1.7230 -1.7983 19 6 1.7439 -2.3791 -2.9232 20 6 2.9538 -2.0138 -3.4887 21 9 3.4040 -2.6504 -4.5921 22 6 3.7020 -0.9954 -2.9228 23 6 3.2401 -0.3443 -1.7947 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 2.9703 1.4236 -0.0004 28 1 1.9690 -1.6134 3.7440 29 1 3.6411 -1.1841 3.3100 30 1 3.4082 0.9591 4.5358 31 1 1.7362 0.5293 4.9694 32 1 3.2036 1.7009 8.1372 33 1 0.3356 -2.0045 -1.3597 34 1 1.1595 -3.1733 -3.3639 35 1 4.6457 -0.7094 -3.3632 36 1 3.8233 0.4503 -1.3533 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909883632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:19 Heat of formation + Delta-G solvation = -180.914787 kcal Electronic energy + Delta-G solvation = -21537.843237 eV Core-core repulsion = 17900.744823 eV Total energy + Delta-G solvation = -3637.098414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.96465 -42.08330 -40.27836 -38.00535 -37.70121 -35.45097 -33.55626 -32.34399 -32.07591 -30.13195 -27.40662 -25.86663 -23.93630 -23.82944 -22.76802 -21.40808 -19.83361 -18.91742 -18.47653 -17.94926 -17.77682 -17.52603 -17.27082 -16.64483 -16.54425 -15.71469 -15.48403 -15.10171 -14.75114 -14.67407 -14.38430 -14.19776 -14.00377 -13.52958 -13.35458 -13.28546 -13.13349 -13.06896 -12.87588 -12.59460 -12.56427 -12.06965 -11.93332 -11.80145 -11.51281 -11.50783 -11.07013 -10.61713 -10.14660 -9.74688 -8.27532 -6.41319 -0.07846 0.19511 0.95896 1.40400 1.44294 1.51425 1.60600 2.38235 2.52890 2.96682 3.06742 3.16489 3.28846 3.56124 3.58036 3.85293 3.92431 4.18620 4.19703 4.21310 4.37715 4.60591 4.65288 4.68637 4.81636 4.88175 5.02438 5.05922 5.16432 5.22257 5.33732 5.45002 5.47815 5.71973 5.79199 6.04848 6.31853 6.66042 6.72662 7.28652 8.84755 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.031284 B = 0.003221 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.824469 B = 8691.910708 C = 9016.344595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.202 3.798 3 O -0.534 6.534 4 C 0.429 3.571 5 O -0.523 6.523 6 O -0.353 6.353 7 C 0.088 3.912 8 C 0.032 3.968 9 C -0.553 4.553 10 H 0.065 0.935 11 C 0.007 3.993 12 N -0.926 5.926 13 Si 0.973 3.027 14 H -0.266 1.266 15 H -0.280 1.280 16 H -0.266 1.266 17 C -0.129 4.129 18 C -0.068 4.068 19 C -0.153 4.153 20 C 0.089 3.911 21 F -0.144 7.144 22 C -0.153 4.153 23 C -0.083 4.083 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.394 0.606 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.007 0.993 31 H 0.005 0.995 32 H 0.268 0.732 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 -3.543 -21.713 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.159 3.841 3 O -0.342 6.342 4 C 0.271 3.729 5 O -0.412 6.412 6 O -0.269 6.269 7 C 0.015 3.985 8 C -0.005 4.005 9 C -0.590 4.590 10 H 0.083 0.917 11 C -0.192 4.192 12 N -0.565 5.565 13 Si 0.796 3.204 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.190 1.190 17 C -0.130 4.130 18 C -0.085 4.085 19 C -0.172 4.172 20 C 0.070 3.930 21 F -0.123 7.123 22 C -0.171 4.171 23 C -0.101 4.101 24 H 0.113 0.887 25 H 0.092 0.908 26 H 0.125 0.875 27 H 0.245 0.755 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.077 0.923 33 H 0.172 0.828 34 H 0.177 0.823 35 H 0.175 0.825 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.740 -3.629 -21.602 22.222 hybrid contribution 1.157 -0.625 0.850 1.566 sum -2.583 -4.255 -20.752 21.341 Atomic orbital electron populations 1.21997 0.87603 1.04784 1.05761 1.19787 0.98004 0.81690 0.84602 1.86655 1.28780 1.22537 1.96239 1.25314 0.74694 0.86663 0.86211 1.90639 1.46399 1.18305 1.85892 1.86603 1.76227 1.44816 1.19226 1.23212 0.97986 0.94740 0.82602 1.18956 0.96642 0.94730 0.90159 1.21349 1.45581 0.97114 0.95003 0.91699 1.25959 0.95133 0.95960 1.02148 1.70086 1.48589 1.11490 1.26340 0.85387 0.79220 0.78317 0.77457 1.19038 1.20476 1.19037 1.20079 0.97011 0.99216 0.96653 1.21147 1.00360 0.93012 0.94029 1.21376 0.95709 1.02456 0.97651 1.18017 0.95017 0.94497 0.85483 1.91495 1.89168 1.80807 1.50821 1.21303 1.01779 0.96518 0.97548 1.21023 0.94546 0.99454 0.95086 0.88677 0.90844 0.87497 0.75512 0.92173 0.92151 0.97472 0.97610 0.92290 0.82800 0.82324 0.82475 0.83076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.12 71.98 0.58 -2.25 16 2 C 0.20 4.89 1.22 -12.28 -0.01 4.87 16 3 O -0.53 -12.48 12.50 -135.70 -1.70 -14.18 16 4 C 0.43 14.22 6.79 71.24 0.48 14.71 16 5 O -0.52 -19.53 15.99 21.98 0.35 -19.18 16 6 O -0.35 -13.93 9.97 -46.49 -0.46 -14.40 16 7 C 0.09 3.90 5.40 71.98 0.39 4.29 16 8 C 0.03 1.73 5.35 29.85 0.16 1.89 16 9 C -0.55 -31.19 9.11 25.60 0.23 -30.95 16 10 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 11 C 0.01 0.41 5.46 84.66 0.46 0.87 16 12 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 13 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 14 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 15 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 16 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 17 C -0.13 -2.75 4.24 -19.86 -0.08 -2.84 16 18 C -0.07 -1.27 9.11 22.26 0.20 -1.07 16 19 C -0.15 -2.72 10.03 22.31 0.22 -2.49 16 20 C 0.09 1.74 7.30 22.38 0.16 1.90 16 21 F -0.14 -2.95 17.27 44.97 0.78 -2.18 16 22 C -0.15 -2.74 10.03 22.31 0.22 -2.52 16 23 C -0.08 -1.57 9.31 22.26 0.21 -1.36 16 24 H 0.09 1.56 6.51 -2.39 -0.02 1.54 16 25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.39 6.92 7.32 -74.06 -0.54 6.38 16 28 H 0.06 2.64 8.13 -2.38 -0.02 2.62 16 29 H 0.06 2.64 8.13 -2.39 -0.02 2.62 16 30 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.30 16 32 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 33 H 0.15 2.29 6.15 -2.91 -0.02 2.27 16 34 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.15 2.14 6.49 -2.91 -0.02 2.12 16 Total: -1.00 -69.16 318.82 5.08 -64.07 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.57 Total: 10.50 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 3.23 Total: -14.95 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.28 Total: -54.99 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -1.81 Total: -47.75 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -69.16 5.08 -64.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909883632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.843 kcal (2) G-P(sol) polarization free energy of solvation -69.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds