Wall clock time and date at job start Tue Mar 31 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37702 * 125.63503 * 2 1 4 4 C 1.46492 * 126.25710 * 359.97438 * 3 2 1 5 5 O 1.21629 * 119.99777 * 179.71534 * 4 3 2 6 6 O 1.34890 * 120.00400 * 359.71400 * 4 3 2 7 7 C 1.45206 * 117.00047 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47129 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.46965 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46857 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99963 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00204 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99565 * 0.02562 * 12 10 9 14 14 Si 1.86790 * 120.00144 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47266 * 90.00541 * 14 12 10 16 16 H 1.48500 * 109.47253 * 210.00408 * 14 12 10 17 17 H 1.48494 * 109.47535 * 330.00602 * 14 12 10 18 18 C 1.37991 * 107.47524 * 179.72040 * 3 2 1 19 19 C 1.39795 * 106.96802 * 0.23924 * 18 3 2 20 20 C 1.34964 * 125.64176 * 180.13713 * 2 1 3 21 21 N 1.48026 * 125.50467 * 0.03355 * 20 2 1 22 22 O 1.21799 * 120.00032 * 180.26244 * 21 20 2 23 23 O 1.21802 * 119.99628 * 0.26665 * 21 20 2 24 24 H 1.08999 * 109.47293 * 90.00645 * 1 2 3 25 25 H 1.09005 * 109.47090 * 210.00453 * 1 2 3 26 26 H 1.08993 * 109.47447 * 330.00100 * 1 2 3 27 27 H 1.09004 * 109.47122 * 300.00002 * 7 6 4 28 28 H 1.09000 * 109.47070 * 60.00027 * 7 6 4 29 29 H 1.09004 * 109.46930 * 299.99887 * 8 7 6 30 30 H 1.09004 * 109.47059 * 59.99488 * 8 7 6 31 31 H 1.09004 * 109.46976 * 299.99579 * 9 8 7 32 32 H 1.08992 * 109.47530 * 59.99431 * 9 8 7 33 33 H 0.97002 * 119.99803 * 179.97438 * 13 12 10 34 34 H 1.08005 * 126.51372 * 180.23556 * 18 3 2 35 35 H 1.08006 * 126.07756 * 179.97438 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2673 1.1192 0.0000 4 6 1.8119 2.5115 -0.0005 5 8 2.6241 3.4169 0.0048 6 8 0.4920 2.7896 -0.0069 7 6 0.1137 4.1915 -0.0076 8 6 -1.4119 4.3080 -0.0145 9 6 -1.8105 5.7851 -0.0159 10 6 -3.3131 5.8998 -0.0233 11 1 -3.9228 5.0083 -0.0263 12 6 -3.9097 7.1429 -0.0253 13 7 -3.1673 8.2285 -0.0211 14 14 -5.7721 7.2851 -0.0352 15 1 -6.2733 7.3215 1.3622 16 1 -6.1697 8.5325 -0.7362 17 1 -6.3543 6.1146 -0.7395 18 6 3.5784 0.6891 0.0064 19 6 3.5494 -0.7085 0.0047 20 6 2.2514 -1.0968 -0.0026 21 7 1.7731 -2.4977 -0.0067 22 8 2.5745 -3.4148 -0.0040 23 8 0.5780 -2.7330 -0.0128 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 0.5106 4.6754 0.8848 28 1 0.5195 4.6769 -0.8952 29 1 -1.8092 3.8240 -0.9067 30 1 -1.8174 3.8226 0.8732 31 1 -1.4132 6.2695 0.8761 32 1 -1.4050 6.2701 -0.9038 33 1 -3.5869 9.1031 -0.0229 34 1 4.4596 1.3136 0.0117 35 1 4.4089 -1.3626 0.0081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914625480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:24 Heat of formation + Delta-G solvation = -46.636292 kcal Electronic energy + Delta-G solvation = -21239.483868 eV Core-core repulsion = 17628.128168 eV Total energy + Delta-G solvation = -3611.355700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.01743 -41.76370 -40.12760 -37.06417 -36.82682 -34.21454 -33.66462 -31.93735 -31.20382 -27.79517 -27.26758 -26.57719 -24.05059 -22.72673 -21.79093 -20.79438 -20.32714 -19.12993 -18.88489 -18.16113 -18.14327 -16.96843 -16.82904 -16.16841 -15.75519 -14.82335 -14.55745 -14.34916 -14.22760 -14.03291 -13.44713 -13.06617 -12.82321 -12.37536 -12.29047 -12.09436 -11.95286 -11.59670 -11.52835 -11.09270 -11.07877 -10.82214 -10.66443 -10.63913 -9.91972 -9.71314 -9.66007 -9.48256 -9.28362 -8.48271 -6.12996 -4.16743 -0.44782 0.56361 0.82222 1.81186 1.95929 2.36871 2.56102 3.24615 3.31422 3.34189 4.00602 4.10314 4.34046 4.44764 4.72009 4.82127 4.97656 5.23152 5.23395 5.28640 5.34519 5.35539 5.50649 5.64396 5.77845 5.91205 6.07833 6.19141 6.33661 6.55922 6.79361 7.22740 7.43089 7.47667 7.57085 7.84196 8.24025 8.89252 9.48287 10.98342 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.003008 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.851281 B = 9305.964922 C =10256.757508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.383 5.383 3 C 0.042 3.958 4 C 0.531 3.469 5 O -0.480 6.480 6 O -0.357 6.357 7 C 0.068 3.932 8 C -0.109 4.109 9 C 0.025 3.975 10 C -0.524 4.524 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.110 4.110 19 C -0.101 4.101 20 C 0.073 3.927 21 N 0.057 4.943 22 O -0.133 6.133 23 O -0.168 6.168 24 H 0.096 0.904 25 H 0.110 0.890 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.263 0.737 34 H 0.178 0.822 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.455 -17.678 0.150 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.060 5.060 3 C -0.075 4.075 4 C 0.374 3.626 5 O -0.366 6.366 6 O -0.273 6.273 7 C -0.004 4.004 8 C -0.147 4.147 9 C -0.012 4.012 10 C -0.563 4.563 11 H 0.076 0.924 12 C -0.144 4.144 13 N -0.532 5.532 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.135 4.135 19 C -0.130 4.130 20 C -0.125 4.125 21 N 0.576 4.424 22 O -0.350 6.350 23 O -0.378 6.378 24 H 0.114 0.886 25 H 0.128 0.872 26 H 0.136 0.864 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.196 0.804 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 12.397 -16.507 0.149 20.645 hybrid contribution -1.205 -0.031 -0.029 1.206 sum 11.192 -16.538 0.119 19.970 Atomic orbital electron populations 1.22940 0.72947 1.07563 1.06224 1.43914 1.08764 1.03107 1.50180 1.20108 0.90461 0.84179 1.12796 1.19466 0.82267 0.86660 0.74249 1.90962 1.55155 1.45547 1.44936 1.86592 1.23606 1.33943 1.83206 1.23705 0.98851 0.75074 1.02801 1.21811 0.88614 1.02222 1.02039 1.19049 0.96748 0.87648 0.97803 1.21138 0.91356 0.92345 1.51425 0.92420 1.25029 0.98470 0.95852 0.95052 1.69958 1.35292 0.97734 1.50239 0.86535 0.85319 0.77624 0.78197 1.20562 1.21128 1.19784 1.21500 0.95171 0.93456 1.03373 1.20860 0.93517 0.95714 1.02870 1.20789 0.90934 0.78502 1.22258 1.42546 1.00820 1.01125 0.97928 1.94592 1.52453 1.34892 1.53087 1.94559 0.99050 1.89912 1.54311 0.88577 0.87187 0.86439 0.90901 0.90884 0.92012 0.92040 0.96152 0.96138 0.92785 0.80440 0.80632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 9.96 59.85 0.60 0.98 16 2 N -0.38 -4.04 3.15 -116.78 -0.37 -4.41 16 3 C 0.04 0.46 6.88 -81.99 -0.56 -0.10 16 4 C 0.53 7.16 7.92 34.06 0.27 7.42 16 5 O -0.48 -7.51 16.68 -19.36 -0.32 -7.83 16 6 O -0.36 -5.00 7.66 -41.01 -0.31 -5.31 16 7 C 0.07 1.09 5.48 37.16 0.20 1.30 16 8 C -0.11 -2.03 5.53 -26.73 -0.15 -2.18 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 10 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 11 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 14 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 C -0.11 -0.97 10.66 -39.09 -0.42 -1.39 16 19 C -0.10 -0.84 10.46 -39.99 -0.42 -1.26 16 20 C 0.07 0.76 7.85 -144.54 -1.14 -0.38 16 21 N 0.06 0.66 4.45 32.90 0.15 0.80 16 22 O -0.13 -1.53 19.00 -29.46 -0.56 -2.09 16 23 O -0.17 -2.01 16.64 -29.46 -0.49 -2.50 16 24 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.11 0.94 6.20 -51.93 -0.32 0.62 16 26 H 0.12 1.11 6.16 -51.93 -0.32 0.79 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.18 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 317.52 15.07 4.78 4.78 Total: -1.00 -30.41 317.52 -7.56 -37.97 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -3.99 Total: -3.93 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.16 Total: -8.11 kcal Atomic # 7 Polarization: -29.41 SS G_CDS: 0.52 Total: -28.90 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -1.69 Total: -17.74 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.41 -7.56 -37.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914625480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.665 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds