Wall clock time and date at job start Tue Mar 31 2020 05:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00397 * 2 1 4 4 H 1.48492 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46922 * 300.00129 * 3 2 1 6 6 H 1.48498 * 109.46595 * 60.00048 * 3 2 1 7 7 C 1.37879 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00021 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00094 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47176 * 180.02562 * 9 7 2 11 11 O 1.45208 * 109.47057 * 180.02562 * 10 9 7 12 12 C 1.34227 * 116.99893 * 180.02562 * 11 10 9 13 13 O 1.20828 * 119.99865 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99858 * 179.97438 * 12 11 10 15 15 C 1.53008 * 109.47139 * 179.97438 * 14 12 11 16 16 O 1.42895 * 109.47006 * 179.97438 * 15 14 12 17 17 C 1.35951 * 116.99758 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.03040 * 0.28885 * 17 16 15 19 19 C 1.38147 * 119.96935 * 180.25012 * 18 17 16 20 20 C 1.38455 * 120.02958 * 359.46222 * 19 18 17 21 21 F 1.35101 * 119.97206 * 180.29906 * 20 19 18 22 22 C 1.38452 * 120.06193 * 0.28172 * 20 19 18 23 23 C 1.38156 * 120.03063 * 359.97438 * 22 20 19 24 24 H 0.97005 * 120.00040 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.47025 * 60.00315 * 9 7 2 26 26 H 1.09000 * 109.47474 * 300.00579 * 9 7 2 27 27 H 1.08995 * 109.47420 * 60.00540 * 10 9 7 28 28 H 1.08995 * 109.47519 * 299.99879 * 10 9 7 29 29 H 1.08997 * 109.47470 * 60.00250 * 14 12 11 30 30 H 1.09003 * 109.47335 * 299.99476 * 14 12 11 31 31 H 1.09005 * 109.46539 * 60.00110 * 15 14 12 32 32 H 1.08995 * 109.46786 * 300.00247 * 15 14 12 33 33 H 1.07998 * 120.01328 * 0.02562 * 18 17 16 34 34 H 1.08002 * 119.98838 * 179.74746 * 19 18 17 35 35 H 1.07997 * 119.98751 * 179.97438 * 22 20 19 36 36 H 1.07999 * 120.02057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 8 1.5190 -4.9196 -0.0011 12 6 2.2500 -6.0454 -0.0007 13 8 3.4567 -5.9821 0.0007 14 6 1.5658 -7.3880 -0.0007 15 6 2.6195 -8.4975 -0.0008 16 8 1.9707 -9.7706 -0.0002 17 6 2.7698 -10.8705 -0.0007 18 6 4.1493 -10.7263 0.0043 19 6 4.9601 -11.8448 -0.0015 20 6 4.3963 -13.1093 -0.0010 21 9 5.1903 -14.2024 -0.0005 22 6 3.0194 -13.2548 -0.0006 23 6 2.2062 -12.1379 -0.0002 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 2.8717 -3.6045 0.8894 28 1 2.8718 -3.6045 -0.8905 29 1 0.9434 -7.4787 -0.8909 30 1 0.9428 -7.4784 0.8891 31 1 3.2423 -8.4070 0.8893 32 1 3.2422 -8.4069 -0.8907 33 1 4.5894 -9.7401 0.0090 34 1 6.0343 -11.7329 -0.0017 35 1 2.5809 -14.2417 -0.0006 36 1 1.1322 -12.2516 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914653921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:50 Heat of formation + Delta-G solvation = -159.926394 kcal Electronic energy + Delta-G solvation = -20207.200831 eV Core-core repulsion = 16571.012542 eV Total energy + Delta-G solvation = -3636.188289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.13087 -40.58938 -39.99377 -37.67066 -36.30694 -33.42039 -32.55129 -31.56320 -30.32791 -29.44857 -25.85461 -24.61476 -23.24154 -22.33256 -21.10138 -20.40692 -18.84732 -17.82549 -17.26366 -16.88507 -16.87578 -16.15707 -15.98443 -15.73469 -15.69311 -14.98562 -14.60597 -14.51045 -14.01051 -13.94856 -13.35920 -13.04544 -12.96340 -12.73560 -12.41410 -12.06390 -12.02269 -11.30605 -11.17648 -11.09025 -11.00665 -10.83214 -10.75072 -10.37928 -9.73964 -9.69929 -9.58691 -9.33745 -8.49353 -8.46988 -6.14981 -4.19614 0.76295 0.83953 2.38656 2.40317 3.19008 3.24472 3.31393 3.35095 3.44624 3.95538 4.25552 4.35262 4.38691 4.48257 4.64047 4.72273 4.88985 4.99464 5.11946 5.21775 5.27787 5.41947 5.46979 5.51566 5.74733 5.75385 5.85249 5.99878 6.00799 6.31396 6.55755 6.86016 6.96071 7.49548 7.55994 7.80499 8.04372 8.18612 8.86121 9.45144 10.96487 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.060619 B = 0.002120 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.787355 B =13201.539531 C =13632.274801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.023 3.977 10 C 0.075 3.925 11 O -0.353 6.353 12 C 0.463 3.537 13 O -0.521 6.521 14 C -0.116 4.116 15 C 0.070 3.930 16 O -0.311 6.311 17 C 0.127 3.873 18 C -0.180 4.180 19 C -0.111 4.111 20 C 0.055 3.945 21 F -0.143 7.143 22 C -0.114 4.114 23 C -0.124 4.124 24 H 0.263 0.737 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.587 -25.119 0.001 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.014 4.014 10 C 0.003 3.997 11 O -0.269 6.269 12 C 0.306 3.694 13 O -0.411 6.411 14 C -0.154 4.154 15 C -0.005 4.005 16 O -0.224 6.224 17 C 0.081 3.919 18 C -0.199 4.199 19 C -0.130 4.130 20 C 0.036 3.964 21 F -0.121 7.121 22 C -0.133 4.133 23 C -0.143 4.143 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.603 -24.933 0.002 25.354 hybrid contribution 0.912 0.930 0.000 1.302 sum 5.515 -24.003 0.001 24.628 Atomic orbital electron populations 1.69980 1.06095 1.26946 1.49723 1.24992 0.94936 0.99446 0.94829 0.86406 0.80031 0.83092 0.77734 1.19592 1.20806 1.20803 1.21004 0.93212 0.90062 1.52246 0.92185 1.19191 0.94202 0.89002 0.98973 1.23705 0.96423 0.78498 1.01090 1.86523 1.42329 1.15772 1.82262 1.23028 0.86299 0.87210 0.72868 1.90652 1.15755 1.88470 1.46232 1.21062 0.99022 0.87684 1.07606 1.22533 0.94775 0.79732 1.03462 1.85996 1.35081 1.12967 1.88389 1.18998 0.89314 0.87208 0.96377 1.21262 0.92374 1.00072 1.06146 1.20975 1.01087 0.90525 1.00418 1.17598 0.88546 0.83054 1.07214 1.91491 1.73770 1.52526 1.94359 1.20955 0.91427 0.99817 1.01090 1.20302 1.00964 0.88648 1.04356 0.92713 0.95273 0.95284 0.92144 0.92153 0.86530 0.86521 0.90609 0.90600 0.83998 0.84377 0.84047 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.58 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.60 5.35 -27.88 -0.15 0.45 16 10 C 0.08 1.61 5.41 37.16 0.20 1.81 16 11 O -0.35 -6.62 10.22 -39.25 -0.40 -7.03 16 12 C 0.46 7.23 7.96 36.00 0.29 7.51 16 13 O -0.52 -9.29 15.73 -18.75 -0.29 -9.59 16 14 C -0.12 -1.23 6.18 -27.88 -0.17 -1.40 16 15 C 0.07 0.70 4.03 37.16 0.15 0.85 16 16 O -0.31 -3.11 10.14 -19.58 -0.20 -3.31 16 17 C 0.13 1.20 6.69 -39.23 -0.26 0.94 16 18 C -0.18 -1.60 9.04 -39.44 -0.36 -1.96 16 19 C -0.11 -0.95 10.02 -39.53 -0.40 -1.34 16 20 C 0.06 0.50 7.30 -39.42 -0.29 0.21 16 21 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 22 C -0.11 -0.88 10.02 -39.53 -0.40 -1.28 16 23 C -0.12 -1.00 9.99 -39.44 -0.39 -1.40 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 28 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 29 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.75 7.61 -51.93 -0.40 0.35 16 32 H 0.08 0.75 7.63 -51.93 -0.40 0.35 16 33 H 0.14 1.15 6.30 -52.49 -0.33 0.82 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -31.04 324.63 -6.90 -37.95 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -4.47 Total: -3.47 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -2.19 Total: -8.92 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.74 Total: -25.27 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.89 Total: -19.93 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.04 -6.90 -37.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914653921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.979 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds