Wall clock time and date at job start Tue Mar 31 2020 05:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00397 * 2 1 4 4 H 1.48492 * 109.47229 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46922 * 300.00129 * 3 2 1 6 6 H 1.48498 * 109.46595 * 60.00048 * 3 2 1 7 7 C 1.37879 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00021 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00094 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47176 * 180.02562 * 9 7 2 11 11 O 1.45208 * 109.47057 * 180.02562 * 10 9 7 12 12 C 1.34227 * 116.99893 * 180.02562 * 11 10 9 13 13 O 1.20828 * 119.99865 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99858 * 179.97438 * 12 11 10 15 15 C 1.53008 * 109.47139 * 179.97438 * 14 12 11 16 16 O 1.42895 * 109.47006 * 179.97438 * 15 14 12 17 17 C 1.35951 * 116.99758 * 179.97438 * 16 15 14 18 18 C 1.38708 * 120.03040 * 0.28885 * 17 16 15 19 19 C 1.38147 * 119.96935 * 180.25012 * 18 17 16 20 20 C 1.38455 * 120.02958 * 359.46222 * 19 18 17 21 21 F 1.35101 * 119.97206 * 180.29906 * 20 19 18 22 22 C 1.38452 * 120.06193 * 0.28172 * 20 19 18 23 23 C 1.38156 * 120.03063 * 359.97438 * 22 20 19 24 24 H 0.97005 * 120.00040 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.47025 * 60.00315 * 9 7 2 26 26 H 1.09000 * 109.47474 * 300.00579 * 9 7 2 27 27 H 1.08995 * 109.47420 * 60.00540 * 10 9 7 28 28 H 1.08995 * 109.47519 * 299.99879 * 10 9 7 29 29 H 1.08997 * 109.47470 * 60.00250 * 14 12 11 30 30 H 1.09003 * 109.47335 * 299.99476 * 14 12 11 31 31 H 1.09005 * 109.46539 * 60.00110 * 15 14 12 32 32 H 1.08995 * 109.46786 * 300.00247 * 15 14 12 33 33 H 1.07998 * 120.01328 * 0.02562 * 18 17 16 34 34 H 1.08002 * 119.98838 * 179.74746 * 19 18 17 35 35 H 1.07997 * 119.98751 * 179.97438 * 22 20 19 36 36 H 1.07999 * 120.02057 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 8 1.5190 -4.9196 -0.0011 12 6 2.2500 -6.0454 -0.0007 13 8 3.4567 -5.9821 0.0007 14 6 1.5658 -7.3880 -0.0007 15 6 2.6195 -8.4975 -0.0008 16 8 1.9707 -9.7706 -0.0002 17 6 2.7698 -10.8705 -0.0007 18 6 4.1493 -10.7263 0.0043 19 6 4.9601 -11.8448 -0.0015 20 6 4.3963 -13.1093 -0.0010 21 9 5.1903 -14.2024 -0.0005 22 6 3.0194 -13.2548 -0.0006 23 6 2.2062 -12.1379 -0.0002 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 2.8717 -3.6045 0.8894 28 1 2.8718 -3.6045 -0.8905 29 1 0.9434 -7.4787 -0.8909 30 1 0.9428 -7.4784 0.8891 31 1 3.2423 -8.4070 0.8893 32 1 3.2422 -8.4069 -0.8907 33 1 4.5894 -9.7401 0.0090 34 1 6.0343 -11.7329 -0.0017 35 1 2.5809 -14.2417 -0.0006 36 1 1.1322 -12.2516 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914653921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:50 Heat of formation + Delta-G solvation = -176.472456 kcal Electronic energy + Delta-G solvation = -20207.918322 eV Core-core repulsion = 16571.012542 eV Total energy + Delta-G solvation = -3636.905780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.83744 -41.63052 -41.01700 -38.42150 -37.73432 -35.45926 -33.51061 -32.32941 -32.09341 -30.17980 -27.38983 -25.93686 -23.99651 -23.22254 -22.79446 -21.64502 -19.64884 -18.89670 -18.42852 -18.01764 -17.97197 -17.56446 -17.07757 -17.02013 -16.50016 -16.44036 -15.65782 -15.32935 -15.28813 -14.60714 -14.42386 -14.34602 -14.09271 -13.94859 -13.71324 -13.15991 -13.04037 -12.80770 -12.79713 -12.61003 -12.55619 -11.90740 -11.80767 -11.76014 -11.54773 -11.47867 -11.35238 -10.62394 -10.20518 -9.15937 -8.27850 -6.40807 0.14035 0.16900 1.12073 1.35434 1.41409 1.43340 1.55730 2.31300 2.46263 2.54308 3.06808 3.30509 3.47121 3.70528 3.78371 3.86014 3.91948 4.09605 4.22428 4.24486 4.28177 4.33616 4.54205 4.62743 4.69875 4.74452 4.90175 5.11059 5.13140 5.20336 5.26699 5.46554 5.53862 5.66634 5.74122 6.05806 6.25036 6.66172 6.73876 7.29105 8.84831 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.060619 B = 0.002120 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.787355 B =13201.539531 C =13632.274801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.005 3.995 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.549 4.549 8 H 0.065 0.935 9 C 0.028 3.972 10 C 0.090 3.910 11 O -0.363 6.363 12 C 0.463 3.537 13 O -0.543 6.543 14 C -0.104 4.104 15 C 0.074 3.926 16 O -0.313 6.313 17 C 0.110 3.890 18 C -0.187 4.187 19 C -0.117 4.117 20 C 0.040 3.960 21 F -0.150 7.150 22 C -0.110 4.110 23 C -0.124 4.124 24 H 0.268 0.732 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.165 0.835 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.968 -25.820 0.001 26.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.194 4.194 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.587 4.587 8 H 0.083 0.917 9 C -0.009 4.009 10 C 0.017 3.983 11 O -0.279 6.279 12 C 0.308 3.692 13 O -0.434 6.434 14 C -0.141 4.141 15 C -0.001 4.001 16 O -0.227 6.227 17 C 0.065 3.935 18 C -0.206 4.206 19 C -0.135 4.135 20 C 0.021 3.979 21 F -0.128 7.128 22 C -0.128 4.128 23 C -0.143 4.143 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.182 0.818 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.991 -25.665 0.002 26.145 hybrid contribution 0.778 1.028 -0.001 1.289 sum 5.768 -24.637 0.001 25.303 Atomic orbital electron populations 1.70095 1.07778 1.28208 1.50450 1.25964 0.95855 1.03424 0.94156 0.85276 0.78911 0.78138 0.77980 1.18614 1.20124 1.20114 1.21407 0.93716 0.91252 1.52331 0.91669 1.19003 0.94424 0.90663 0.96804 1.23179 0.94988 0.78914 1.01176 1.86505 1.42603 1.15843 1.82980 1.23934 0.86177 0.87624 0.71494 1.90644 1.16922 1.88651 1.47199 1.21097 0.99037 0.84447 1.09544 1.22437 0.94423 0.79774 1.03504 1.85962 1.35167 1.12920 1.88672 1.19244 0.89586 0.87482 0.97203 1.21351 0.92442 1.00394 1.06404 1.21149 1.01856 0.90390 1.00142 1.17843 0.89182 0.83005 1.07911 1.91473 1.74053 1.52827 1.94495 1.21219 0.90891 1.00859 0.99881 1.20551 1.01997 0.88101 1.03612 0.92342 0.97419 0.97429 0.92003 0.92012 0.84469 0.84460 0.90677 0.90669 0.83659 0.83192 0.81789 0.82165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.79 13.29 21.45 0.28 -54.50 16 2 C 0.01 0.28 5.46 84.66 0.46 0.74 16 3 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -30.64 9.11 25.60 0.23 -30.40 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.48 5.35 29.85 0.16 1.64 16 10 C 0.09 3.90 5.41 71.98 0.39 4.29 16 11 O -0.36 -13.49 10.22 -51.39 -0.53 -14.01 16 12 C 0.46 13.95 7.96 71.24 0.57 14.52 16 13 O -0.54 -18.97 15.73 21.96 0.35 -18.62 16 14 C -0.10 -1.99 6.18 29.85 0.18 -1.81 16 15 C 0.07 1.35 4.03 71.98 0.29 1.64 16 16 O -0.31 -5.69 10.14 -92.99 -0.94 -6.63 16 17 C 0.11 1.92 6.69 22.50 0.15 2.07 16 18 C -0.19 -3.16 9.04 22.36 0.20 -2.95 16 19 C -0.12 -1.88 10.02 22.30 0.22 -1.66 16 20 C 0.04 0.67 7.30 22.37 0.16 0.83 16 21 F -0.15 -2.78 17.27 44.97 0.78 -2.00 16 22 C -0.11 -1.49 10.02 22.30 0.22 -1.27 16 23 C -0.12 -1.76 9.99 22.36 0.22 -1.54 16 24 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 25 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 26 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 28 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 29 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 1.38 7.61 -2.38 -0.02 1.36 16 32 H 0.08 1.38 7.63 -2.39 -0.02 1.37 16 33 H 0.15 2.26 6.30 -2.91 -0.02 2.24 16 34 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 35 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -66.31 324.63 6.52 -59.79 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 1.09 Total: 4.78 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 3.47 Total: -13.90 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.28 Total: -54.50 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -1.12 Total: -39.27 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -66.31 6.52 -59.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914653921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.684 kcal (2) G-P(sol) polarization free energy of solvation -66.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds