Wall clock time and date at job start Tue Mar 31 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47365 * 2 1 4 4 C 1.46488 * 120.00235 * 270.00489 * 3 2 1 5 5 C 1.50702 * 109.47086 * 269.99519 * 4 3 2 6 6 H 1.07999 * 120.00051 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99968 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99800 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00020 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47221 * 90.00414 * 9 7 5 11 11 H 1.48510 * 109.46904 * 210.00239 * 9 7 5 12 12 H 1.48495 * 109.47132 * 329.99977 * 9 7 5 13 13 C 1.34782 * 119.99481 * 90.00073 * 3 2 1 14 14 S 1.71199 * 119.99740 * 179.97438 * 13 3 2 15 15 N 1.34777 * 120.00119 * 0.02562 * 13 3 2 16 16 C 1.40003 * 119.99889 * 185.51627 * 15 13 3 17 17 C 1.38854 * 120.04406 * 41.93262 * 16 15 13 18 18 C 1.38115 * 119.95684 * 180.22681 * 17 16 15 19 19 C 1.38483 * 120.04277 * 359.51652 * 18 17 16 20 20 F 1.35098 * 119.95293 * 180.25748 * 19 18 17 21 21 C 1.38469 * 120.08808 * 0.22616 * 19 18 17 22 22 C 1.38119 * 120.05067 * 0.02562 * 21 19 18 23 23 H 1.09004 * 109.47093 * 59.99193 * 1 2 3 24 24 H 1.08996 * 109.47251 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46907 * 299.99756 * 1 2 3 26 26 H 1.08998 * 109.47156 * 240.00701 * 2 1 3 27 27 H 1.09000 * 109.47345 * 120.00355 * 2 1 3 28 28 H 1.08993 * 109.47555 * 29.99602 * 4 3 2 29 29 H 1.09007 * 109.47344 * 150.00005 * 4 3 2 30 30 H 0.97006 * 120.00126 * 179.97438 * 8 7 5 31 31 H 0.97004 * 120.00125 * 5.52231 * 15 13 3 32 32 H 1.07997 * 120.02763 * 0.02562 * 17 16 15 33 33 H 1.07994 * 119.98097 * 179.78951 * 18 17 16 34 34 H 1.08003 * 119.97319 * 180.02562 * 21 19 18 35 35 H 1.07999 * 120.02432 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3907 -2.8774 8 7 5.3912 2.1837 -3.2573 9 14 3.0134 3.4374 -3.9278 10 1 3.1172 4.8573 -3.5056 11 1 3.4064 3.3153 -5.3547 12 1 1.6136 2.9717 -3.7584 13 6 2.2430 2.0165 1.1673 14 16 2.8144 3.6304 1.1674 15 7 2.0188 1.3809 2.3345 16 6 2.1407 2.0751 3.5442 17 6 1.6417 3.3658 3.6584 18 6 1.7670 4.0507 4.8512 19 6 2.3809 3.4472 5.9359 20 9 2.4979 4.1169 7.1034 21 6 2.8745 2.1581 5.8257 22 6 2.7558 1.4717 4.6331 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5817 1.6879 -2.0282 29 1 2.0955 3.1412 -1.1382 30 1 5.7173 2.5742 -4.0832 31 1 1.7731 0.4425 2.3363 32 1 1.1588 3.8352 2.8141 33 1 1.3821 5.0558 4.9394 34 1 3.3525 1.6891 6.6730 35 1 3.1405 0.4662 4.5477 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920992887.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:07 Heat of formation + Delta-G solvation = 12.710448 kcal Electronic energy + Delta-G solvation = -19487.148667 eV Core-core repulsion = 16333.492095 eV Total energy + Delta-G solvation = -3153.656572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.81923 -40.09035 -38.37702 -35.28579 -32.78283 -31.34818 -31.12286 -29.50755 -27.55486 -24.79255 -23.32521 -23.09085 -21.84699 -20.59300 -18.32960 -17.81054 -17.42170 -17.02717 -16.12700 -15.60176 -15.50564 -14.88700 -14.52682 -14.26838 -14.01479 -13.62794 -13.49813 -13.19901 -12.85343 -12.62916 -12.46800 -12.31609 -11.84973 -11.81162 -11.25352 -11.10237 -11.01161 -10.65434 -10.45874 -10.30185 -9.67432 -9.15828 -9.07670 -8.63967 -7.97248 -7.14277 -6.44583 -6.13988 -4.14187 1.01458 1.32345 1.94842 2.44467 3.05637 3.26722 3.31270 3.37637 3.52695 3.67267 4.33100 4.35323 4.74943 4.76646 4.88104 5.03463 5.16831 5.22250 5.25209 5.37563 5.51190 5.54765 5.74058 5.89489 6.00967 6.11153 6.13467 6.31696 6.36680 6.49485 6.66975 6.91905 7.02738 7.29668 7.44729 7.64047 8.36520 8.84905 9.43229 10.99020 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023629 B = 0.004736 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.679318 B = 5911.245307 C = 6443.511786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.086 3.914 3 N -0.527 5.527 4 C 0.208 3.792 5 C -0.525 4.525 6 H 0.074 0.926 7 C 0.081 3.919 8 N -0.892 5.892 9 Si 0.875 3.125 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.554 3.446 14 S -0.625 6.625 15 N -0.651 5.651 16 C 0.139 3.861 17 C -0.044 4.044 18 C -0.146 4.146 19 C 0.091 3.909 20 F -0.144 7.144 21 C -0.150 4.150 22 C -0.105 4.105 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.266 0.734 31 H 0.402 0.598 32 H 0.153 0.847 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.598 -5.631 13.796 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.041 4.041 3 N -0.230 5.230 4 C 0.088 3.912 5 C -0.563 4.563 6 H 0.092 0.908 7 C -0.122 4.122 8 N -0.530 5.530 9 Si 0.701 3.299 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.197 3.803 14 S -0.490 6.490 15 N -0.281 5.281 16 C 0.044 3.956 17 C -0.067 4.067 18 C -0.167 4.167 19 C 0.071 3.929 20 F -0.123 7.123 21 C -0.170 4.170 22 C -0.126 4.126 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.241 0.759 32 H 0.171 0.829 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.088 -4.559 13.430 18.002 hybrid contribution -0.532 -0.743 -0.516 1.049 sum -11.620 -5.302 12.914 18.163 Atomic orbital electron populations 1.22209 0.95049 1.02586 1.03008 1.21843 0.94717 0.83351 1.04141 1.47555 1.56869 1.12626 1.05913 1.20344 0.98572 0.95316 0.76962 1.20977 0.94441 1.33595 1.07326 0.90806 1.24723 0.94936 0.95400 0.97186 1.69873 1.15043 1.44581 1.23504 0.86881 0.81096 0.82212 0.79685 1.19367 1.21115 1.19244 1.22289 0.82346 0.94525 0.81186 1.93200 1.64126 0.98800 1.92890 1.42300 1.69728 1.13229 1.02837 1.17388 1.00027 0.93870 0.84291 1.21307 0.96064 0.92742 0.96606 1.20934 1.02731 1.01352 0.91725 1.17713 1.01853 0.91314 0.82061 1.91471 1.94325 1.80307 1.46216 1.20745 1.03702 0.93697 0.98901 1.20685 0.98743 1.00964 0.92215 0.91389 0.91007 0.92635 0.87830 0.91368 0.94501 0.91187 0.92392 0.75887 0.82944 0.84550 0.84727 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 10.24 37.15 0.38 -1.35 16 2 C 0.09 1.11 5.94 -4.04 -0.02 1.09 16 3 N -0.53 -9.59 2.46 -177.09 -0.43 -10.02 16 4 C 0.21 4.67 3.99 -5.20 -0.02 4.65 16 5 C -0.52 -14.26 9.94 -34.44 -0.34 -14.60 16 6 H 0.07 2.24 8.06 -52.49 -0.42 1.81 16 7 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 8 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 9 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 13 C 0.55 10.25 7.46 -86.91 -0.65 9.61 16 14 S -0.63 -14.40 24.47 -107.50 -2.63 -17.03 16 15 N -0.65 -9.11 5.20 -11.39 -0.06 -9.17 16 16 C 0.14 1.92 5.91 -83.67 -0.49 1.43 16 17 C -0.04 -0.64 7.86 -39.40 -0.31 -0.95 16 18 C -0.15 -1.92 10.02 -39.54 -0.40 -2.31 16 19 C 0.09 1.15 7.30 -39.41 -0.29 0.86 16 20 F -0.14 -1.87 17.26 2.25 0.04 -1.83 16 21 C -0.15 -1.71 10.02 -39.54 -0.40 -2.10 16 22 C -0.10 -1.22 9.97 -39.40 -0.39 -1.61 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.10 1.41 8.07 -51.93 -0.42 0.99 16 27 H 0.07 0.70 6.29 -51.93 -0.33 0.38 16 28 H 0.04 0.78 7.13 -51.93 -0.37 0.41 16 29 H 0.07 1.71 6.00 -51.93 -0.31 1.40 16 30 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.40 4.26 6.52 -40.82 -0.27 3.99 16 32 H 0.15 2.44 6.28 -50.12 -0.31 2.13 16 33 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 310.93 15.07 4.69 4.69 Total: -1.00 -33.36 310.93 -9.46 -42.81 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.13 Total: 3.54 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -3.03 Total: -3.12 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.28 Total: -45.34 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Atomic # 16 Polarization: -14.40 SS G_CDS: -2.63 Total: -17.03 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.36 -9.46 -42.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920992887.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.525 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds