Wall clock time and date at job start Tue Mar 31 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99701 * 2 1 4 4 H 1.48504 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46750 * 299.99495 * 3 2 1 6 6 H 1.48498 * 109.47076 * 59.99575 * 3 2 1 7 7 C 1.38804 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 162.55095 * 7 2 1 9 9 N 1.36933 * 120.00274 * 342.82344 * 7 2 1 10 10 C 1.46964 * 120.59941 * 151.29483 * 9 7 2 11 11 C 1.53807 * 108.39953 * 124.75704 * 10 9 7 12 12 N 1.46965 * 108.57986 * 49.64157 * 11 10 9 13 13 C 1.34777 * 120.59893 * 124.62428 * 12 11 10 14 14 O 1.21275 * 120.00207 * 180.02562 * 13 12 11 15 15 C 1.50707 * 119.99596 * 0.02562 * 13 12 11 16 16 O 1.42896 * 109.46991 * 180.02562 * 15 13 12 17 17 C 1.42897 * 114.00042 * 179.97438 * 16 15 13 18 18 F 1.39899 * 109.47123 * 59.99830 * 17 16 15 19 19 F 1.39899 * 109.47513 * 180.02562 * 17 16 15 20 20 F 1.39899 * 109.47272 * 300.00317 * 17 16 15 21 21 C 1.46969 * 118.80923 * 304.64744 * 12 11 10 22 22 C 1.46971 * 120.58954 * 331.57456 * 9 7 2 23 23 H 0.97004 * 120.00510 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.60931 * 244.54512 * 10 9 7 25 25 H 1.09004 * 109.60392 * 5.05580 * 10 9 7 26 26 H 1.09002 * 109.74746 * 289.85471 * 11 10 9 27 27 H 1.09000 * 109.67655 * 169.39066 * 11 10 9 28 28 H 1.09008 * 109.46880 * 300.00291 * 15 13 12 29 29 H 1.08996 * 109.47269 * 59.99699 * 15 13 12 30 30 H 1.09001 * 109.60759 * 295.47709 * 21 12 11 31 31 H 1.08998 * 109.74755 * 175.05508 * 21 12 11 32 32 H 1.08993 * 109.60915 * 354.94812 * 22 9 7 33 33 H 1.09004 * 109.60752 * 115.28520 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2236 -0.2799 9 7 1.3715 -2.3614 0.3513 10 6 1.8066 -3.6519 -0.2012 11 6 2.1104 -4.6031 0.9687 12 7 0.9734 -4.5785 1.8996 13 6 0.3440 -5.7194 2.2442 14 8 -0.5933 -5.6865 3.0129 15 6 0.8053 -7.0360 1.6741 16 8 -0.0138 -8.0895 2.1854 17 6 0.3410 -9.3873 1.7040 18 9 1.6602 -9.6757 2.0694 19 9 -0.5169 -10.3419 2.2608 20 9 0.2267 -9.4150 0.3100 21 6 0.5346 -3.2873 2.4477 22 6 0.2345 -2.3367 1.2822 23 1 -0.4851 0.8400 -0.0004 24 1 1.0135 -4.0708 -0.8204 25 1 2.7054 -3.5085 -0.8010 26 1 3.0128 -4.2756 1.4848 27 1 2.2521 -5.6157 0.5910 28 1 0.7257 -7.0092 0.5872 29 1 1.8428 -7.2115 1.9581 30 1 1.3249 -2.8662 3.0691 31 1 -0.3654 -3.4280 3.0461 32 1 0.0947 -1.3247 1.6622 33 1 -0.6687 -2.6613 0.7653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933237744.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:03 Heat of formation + Delta-G solvation = -207.386938 kcal Electronic energy + Delta-G solvation = -22783.275230 eV Core-core repulsion = 18623.092119 eV Total energy + Delta-G solvation = -4160.183111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.098 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.41388 -48.15359 -48.10273 -40.01536 -38.10205 -36.76815 -34.07270 -31.32006 -30.89912 -28.83847 -26.84410 -25.16734 -23.75283 -22.87486 -20.92141 -19.72903 -19.35768 -19.21606 -18.51349 -17.18626 -16.32416 -16.13034 -15.92552 -14.95932 -14.91239 -14.85515 -14.64203 -14.52551 -14.30016 -14.23347 -14.12769 -13.83184 -13.68784 -13.49117 -13.37414 -12.69381 -12.50283 -11.88708 -11.32354 -11.24418 -10.92296 -10.84533 -10.64407 -10.35115 -10.06555 -9.94902 -9.59367 -8.69615 -8.42671 -6.81720 -5.92619 -3.38729 1.52179 2.64218 2.68360 3.29582 3.35518 3.38447 3.39898 3.81647 3.89031 4.34657 4.40985 4.62835 4.75931 5.06492 5.25053 5.54772 5.59631 5.62018 5.72370 6.00725 6.19849 6.25157 6.36666 6.56048 6.69516 7.13472 7.44902 7.62241 7.66698 8.26907 8.27899 9.03598 9.66135 10.22100 11.14968 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.043750 B = 0.003671 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.839909 B = 7626.321849 C = 7865.114602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.261 4.261 8 H 0.069 0.931 9 N -0.591 5.591 10 C 0.130 3.870 11 C 0.084 3.916 12 N -0.590 5.590 13 C 0.515 3.485 14 O -0.529 6.529 15 C 0.037 3.963 16 O -0.348 6.348 17 C 0.596 3.404 18 F -0.176 7.176 19 F -0.140 7.140 20 F -0.175 7.175 21 C 0.089 3.911 22 C 0.157 3.843 23 H 0.256 0.744 24 H 0.025 0.975 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.088 -15.850 2.104 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.390 4.390 8 H 0.087 0.913 9 N -0.314 5.314 10 C 0.002 3.998 11 C -0.041 4.041 12 N -0.324 5.324 13 C 0.301 3.699 14 O -0.406 6.406 15 C -0.041 4.041 16 O -0.270 6.270 17 C 0.503 3.497 18 F -0.159 7.159 19 F -0.121 7.121 20 F -0.157 7.157 21 C -0.033 4.033 22 C 0.031 3.969 23 H 0.066 0.934 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.346 -15.656 2.612 16.221 hybrid contribution 0.631 0.581 -0.327 0.918 sum 3.977 -15.075 2.285 15.757 Atomic orbital electron populations 1.70020 1.05372 1.25810 1.53115 1.25099 0.95287 0.98663 1.00318 0.86201 0.79349 0.83650 0.77393 1.20155 1.21624 1.21405 1.19225 0.92786 0.84569 1.42433 0.91313 1.44026 1.36538 1.01606 1.49183 1.21368 0.98699 0.87459 0.92244 1.22589 0.88546 1.00285 0.92672 1.47997 1.32557 1.06453 1.45412 1.19594 0.83681 0.84287 0.82384 1.90729 1.28009 1.86256 1.35584 1.22704 0.95163 0.85708 1.00548 1.88410 1.57155 1.12673 1.68785 1.19532 0.74180 0.81376 0.74565 1.93261 1.37268 1.93779 1.91545 1.93275 1.70734 1.62411 1.85686 1.93272 1.95717 1.96320 1.30397 1.22594 1.00162 0.81936 0.98646 1.21224 0.89107 0.98667 0.87943 0.93384 0.95672 0.91151 0.90838 0.91254 0.87819 0.88029 0.91687 0.89842 0.87997 0.95643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.99 11.20 55.49 0.62 -24.37 16 2 C 0.01 0.15 4.91 -17.44 -0.09 0.06 16 3 Si 0.90 20.60 29.59 -169.99 -5.03 15.57 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.26 -6.66 9.57 -15.06 -0.14 -6.80 16 8 H 0.07 1.71 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -13.66 2.96 -171.77 -0.51 -14.17 16 10 C 0.13 2.36 6.70 -3.37 -0.02 2.34 16 11 C 0.08 1.20 6.52 -3.37 -0.02 1.18 16 12 N -0.59 -9.90 2.95 -172.21 -0.51 -10.41 16 13 C 0.52 8.55 7.77 -10.98 -0.09 8.46 16 14 O -0.53 -10.82 15.91 -14.35 -0.23 -11.05 16 15 C 0.04 0.45 4.48 36.01 0.16 0.61 16 16 O -0.35 -4.72 10.11 -55.14 -0.56 -5.28 16 17 C 0.60 6.56 3.75 101.05 0.38 6.94 16 18 F -0.18 -1.78 16.86 2.25 0.04 -1.74 16 19 F -0.14 -1.57 17.53 2.25 0.04 -1.54 16 20 F -0.17 -1.84 16.86 2.25 0.04 -1.80 16 21 C 0.09 1.69 6.59 -3.60 -0.02 1.67 16 22 C 0.16 3.56 5.51 -3.60 -0.02 3.54 16 23 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 24 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.07 0.72 5.91 -51.93 -0.31 0.41 16 28 H 0.10 1.05 7.31 -51.92 -0.38 0.67 16 29 H 0.10 0.94 7.50 -51.93 -0.39 0.55 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.60 7.00 -51.93 -0.36 1.24 16 32 H 0.10 2.57 6.00 -51.93 -0.31 2.26 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 291.51 15.07 4.39 4.39 Total: -1.00 -30.26 291.51 -4.97 -35.22 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -3.40 Total: -2.84 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 0.14 Total: 18.00 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.39 Total: -48.94 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.79 Total: -16.32 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.12 Total: -5.08 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.26 -4.97 -35.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933237744.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.164 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds