Wall clock time and date at job start Tue Mar 31 2020 05:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99964 * 2 1 4 4 H 1.48508 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47068 * 299.99064 * 3 2 1 6 6 H 1.48493 * 109.47426 * 59.99473 * 3 2 1 7 7 C 1.38817 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99880 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.47577 * 134.49180 * 179.97438 * 9 7 2 11 11 C 1.53950 * 86.11982 * 155.35595 * 10 9 7 12 12 N 1.46499 * 113.74283 * 137.95241 * 11 10 9 13 13 C 1.34777 * 119.99665 * 157.20690 * 12 11 10 14 14 O 1.21563 * 120.00283 * 359.72077 * 13 12 11 15 15 C 1.47730 * 119.99572 * 179.72382 * 13 12 11 16 16 C 1.39659 * 120.10523 * 179.97438 * 15 13 12 17 17 C 1.37844 * 119.92166 * 180.02562 * 16 15 13 18 18 C 1.38606 * 120.15260 * 0.02562 * 17 16 15 19 19 F 1.35103 * 119.89559 * 179.97438 * 18 17 16 20 20 C 1.38841 * 120.21789 * 359.97427 * 18 17 16 21 21 F 1.35098 * 119.96324 * 180.02562 * 20 18 17 22 22 C 1.38064 * 120.07158 * 359.72725 * 20 18 17 23 23 C 1.47814 * 134.45715 * 359.86085 * 9 7 2 24 24 H 0.97003 * 119.99806 * 0.02562 * 1 2 3 25 25 H 1.09005 * 113.76936 * 41.05826 * 10 9 7 26 26 H 1.08997 * 113.77659 * 269.65640 * 10 9 7 27 27 H 1.09000 * 113.74304 * 269.16191 * 11 10 9 28 28 H 0.97001 * 119.99790 * 336.92403 * 12 11 10 29 29 H 1.07995 * 120.03869 * 0.02562 * 16 15 13 30 30 H 1.08004 * 119.92682 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.07450 * 180.27652 * 22 20 18 32 32 H 1.09000 * 113.76874 * 90.37935 * 23 9 7 33 33 H 1.09000 * 113.83941 * 318.92025 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2123 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3470 -4.0830 0.6410 12 7 -0.3333 -5.2614 0.0982 13 6 -1.2772 -5.8897 0.8267 14 8 -1.5604 -5.4817 1.9363 15 6 -1.9676 -7.0744 0.2768 16 6 -2.9456 -7.7275 1.0300 17 6 -3.5870 -8.8329 0.5134 18 6 -3.2632 -9.2979 -0.7515 19 9 -3.8948 -10.3821 -1.2525 20 6 -2.2918 -8.6532 -1.5055 21 9 -1.9806 -9.1105 -2.7380 22 6 -1.6480 -7.5416 -0.9995 23 6 -0.1058 -2.7570 0.0026 24 1 -0.4850 0.8401 -0.0004 25 1 2.5624 -4.0323 0.6558 26 1 1.8319 -4.2351 -0.9969 27 1 0.3595 -4.0638 1.7308 28 1 -0.1074 -5.5869 -0.7872 29 1 -3.1991 -7.3670 2.0160 30 1 -4.3437 -9.3378 1.0957 31 1 -0.8956 -7.0374 -1.5878 32 1 -0.5312 -2.8721 -0.9943 33 1 -0.7189 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030441335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:44 Heat of formation + Delta-G solvation = -38.314267 kcal Electronic energy + Delta-G solvation = -20913.401817 eV Core-core repulsion = 17191.319471 eV Total energy + Delta-G solvation = -3722.082346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.81262 -48.88203 -40.27845 -38.55921 -37.36766 -33.83388 -32.11214 -31.16739 -30.75716 -27.51511 -24.91235 -24.63657 -23.65059 -22.67005 -20.68201 -19.82465 -18.53694 -17.69697 -17.41241 -16.83105 -16.65692 -16.50682 -15.72372 -15.29156 -15.07014 -14.83545 -14.64346 -14.57791 -14.06188 -13.88831 -13.41754 -12.79667 -12.76595 -12.32062 -11.99388 -11.79246 -11.52969 -11.49926 -10.93514 -10.84966 -10.51708 -10.10668 -9.83549 -9.59845 -9.55067 -9.12228 -8.86688 -8.57545 -6.98089 -5.82429 -3.16736 0.20628 0.59719 2.49620 3.18428 3.35165 3.37177 3.42082 3.44381 3.44831 3.92580 4.12051 4.35280 4.44578 4.59689 4.77787 5.06580 5.23922 5.29283 5.40608 5.42013 5.48761 5.63387 5.79279 5.94095 6.11847 6.27926 6.31687 6.46813 6.61183 7.16972 7.26199 7.48720 7.68169 7.91006 8.29791 8.97650 9.64081 10.49210 11.34313 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.037907 B = 0.003183 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.469257 B = 8795.249256 C = 9098.783939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.227 4.227 8 H 0.083 0.917 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.090 3.910 12 N -0.707 5.707 13 C 0.555 3.445 14 O -0.530 6.530 15 C -0.107 4.107 16 C -0.042 4.042 17 C -0.132 4.132 18 C 0.086 3.914 19 F -0.126 7.126 20 C 0.062 3.938 21 F -0.126 7.126 22 C -0.095 4.095 23 C 0.154 3.846 24 H 0.255 0.745 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.114 0.886 28 H 0.396 0.604 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.030 0.970 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 -19.223 -1.344 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.354 4.354 8 H 0.101 0.899 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.014 4.014 12 N -0.357 5.357 13 C 0.341 3.659 14 O -0.408 6.408 15 C -0.111 4.111 16 C -0.061 4.061 17 C -0.151 4.151 18 C 0.065 3.935 19 F -0.104 7.104 20 C 0.042 3.958 21 F -0.104 7.104 22 C -0.114 4.114 23 C 0.027 3.973 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.132 0.868 28 H 0.231 0.769 29 H 0.174 0.826 30 H 0.171 0.829 31 H 0.169 0.831 32 H 0.047 0.953 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.036 -18.590 -0.610 19.555 hybrid contribution 0.466 0.438 -1.093 1.267 sum -5.570 -18.152 -1.703 19.064 Atomic orbital electron populations 1.69831 1.05068 1.25463 1.56055 1.24827 0.95707 0.97694 1.02040 0.86013 0.78717 0.83476 0.77321 1.20381 1.21676 1.21569 1.19028 0.90297 0.81538 1.44550 0.89931 1.45716 1.02363 0.99166 1.86059 1.22873 0.94526 0.86925 0.97101 1.24037 0.93446 0.83799 1.00122 1.46121 1.39010 1.30847 1.19729 1.17975 0.80082 0.82510 0.85357 1.90807 1.64252 1.66184 1.19553 1.20082 0.99135 0.97693 0.94140 1.21272 0.92103 0.92236 1.00494 1.21093 1.02250 0.98178 0.93593 1.17939 0.94686 0.86915 0.93930 1.91549 1.80226 1.51338 1.87319 1.17472 0.99070 0.96893 0.82361 1.91559 1.91918 1.88194 1.38741 1.21291 0.99835 0.94545 0.95746 1.22734 0.88258 0.88982 0.97298 0.93523 0.93048 0.94679 0.86817 0.76909 0.82640 0.82919 0.83073 0.95265 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.07 11.39 55.49 0.63 -26.44 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.23 -6.26 10.70 -15.06 -0.16 -6.42 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.61 -15.17 3.70 -177.84 -0.66 -15.83 16 10 C 0.11 2.15 8.69 -2.97 -0.03 2.12 16 11 C 0.09 1.67 4.40 -70.12 -0.31 1.36 16 12 N -0.71 -10.11 5.32 -56.30 -0.30 -10.41 16 13 C 0.56 8.09 7.77 -12.38 -0.10 7.99 16 14 O -0.53 -9.67 15.97 5.31 0.08 -9.58 16 15 C -0.11 -1.18 5.87 -104.97 -0.62 -1.80 16 16 C -0.04 -0.40 9.59 -39.20 -0.38 -0.77 16 17 C -0.13 -1.06 10.01 -39.59 -0.40 -1.46 16 18 C 0.09 0.82 7.31 -39.22 -0.29 0.53 16 19 F -0.13 -1.29 17.18 2.25 0.04 -1.26 16 20 C 0.06 0.63 7.30 -39.42 -0.29 0.34 16 21 F -0.13 -1.38 17.18 2.25 0.04 -1.34 16 22 C -0.09 -0.90 9.51 -39.13 -0.37 -1.28 16 23 C 0.15 3.56 7.33 -2.83 -0.02 3.54 16 24 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 27 H 0.11 2.27 7.51 -51.93 -0.39 1.88 16 28 H 0.40 4.47 6.74 -40.82 -0.28 4.19 16 29 H 0.16 1.41 7.65 -52.49 -0.40 1.00 16 30 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 31 H 0.15 1.16 6.40 -52.49 -0.34 0.82 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 2.08 7.16 -51.93 -0.37 1.71 16 LS Contribution 299.63 15.07 4.52 4.52 Total: -1.00 -32.32 299.63 -6.73 -39.05 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -3.01 Total: 0.52 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -3.04 Total: 3.91 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.33 Total: -52.68 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.08 Total: -2.60 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.32 -6.73 -39.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030441335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.735 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds