Wall clock time and date at job start Tue Mar 31 2020 05:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99964 * 2 1 4 4 H 1.48508 * 109.47134 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47068 * 299.99064 * 3 2 1 6 6 H 1.48493 * 109.47426 * 59.99473 * 3 2 1 7 7 C 1.38817 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99880 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99793 * 0.02562 * 7 2 1 10 10 C 1.47577 * 134.49180 * 179.97438 * 9 7 2 11 11 C 1.53950 * 86.11982 * 155.35595 * 10 9 7 12 12 N 1.46499 * 113.74283 * 137.95241 * 11 10 9 13 13 C 1.34777 * 119.99665 * 157.20690 * 12 11 10 14 14 O 1.21563 * 120.00283 * 359.72077 * 13 12 11 15 15 C 1.47730 * 119.99572 * 179.72382 * 13 12 11 16 16 C 1.39659 * 120.10523 * 179.97438 * 15 13 12 17 17 C 1.37844 * 119.92166 * 180.02562 * 16 15 13 18 18 C 1.38606 * 120.15260 * 0.02562 * 17 16 15 19 19 F 1.35103 * 119.89559 * 179.97438 * 18 17 16 20 20 C 1.38841 * 120.21789 * 359.97427 * 18 17 16 21 21 F 1.35098 * 119.96324 * 180.02562 * 20 18 17 22 22 C 1.38064 * 120.07158 * 359.72725 * 20 18 17 23 23 C 1.47814 * 134.45715 * 359.86085 * 9 7 2 24 24 H 0.97003 * 119.99806 * 0.02562 * 1 2 3 25 25 H 1.09005 * 113.76936 * 41.05826 * 10 9 7 26 26 H 1.08997 * 113.77659 * 269.65640 * 10 9 7 27 27 H 1.09000 * 113.74304 * 269.16191 * 11 10 9 28 28 H 0.97001 * 119.99790 * 336.92403 * 12 11 10 29 29 H 1.07995 * 120.03869 * 0.02562 * 16 15 13 30 30 H 1.08004 * 119.92682 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.07450 * 180.27652 * 22 20 18 32 32 H 1.09000 * 113.76874 * 90.37935 * 23 9 7 33 33 H 1.09000 * 113.83941 * 318.92025 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2123 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3470 -4.0830 0.6410 12 7 -0.3333 -5.2614 0.0982 13 6 -1.2772 -5.8897 0.8267 14 8 -1.5604 -5.4817 1.9363 15 6 -1.9676 -7.0744 0.2768 16 6 -2.9456 -7.7275 1.0300 17 6 -3.5870 -8.8329 0.5134 18 6 -3.2632 -9.2979 -0.7515 19 9 -3.8948 -10.3821 -1.2525 20 6 -2.2918 -8.6532 -1.5055 21 9 -1.9806 -9.1105 -2.7380 22 6 -1.6480 -7.5416 -0.9995 23 6 -0.1058 -2.7570 0.0026 24 1 -0.4850 0.8401 -0.0004 25 1 2.5624 -4.0323 0.6558 26 1 1.8319 -4.2351 -0.9969 27 1 0.3595 -4.0638 1.7308 28 1 -0.1074 -5.5869 -0.7872 29 1 -3.1991 -7.3670 2.0160 30 1 -4.3437 -9.3378 1.0957 31 1 -0.8956 -7.0374 -1.5878 32 1 -0.5312 -2.8721 -0.9943 33 1 -0.7189 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030441335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:43 Heat of formation + Delta-G solvation = -59.553304 kcal Electronic energy + Delta-G solvation = -20914.322811 eV Core-core repulsion = 17191.319471 eV Total energy + Delta-G solvation = -3723.003339 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.60127 -49.67648 -41.41277 -39.80491 -38.71575 -35.29842 -33.90969 -32.11471 -31.61194 -29.37107 -26.62360 -25.87929 -24.67235 -23.92896 -21.82903 -21.40744 -19.49990 -18.79616 -18.56605 -18.28272 -17.46221 -17.44179 -17.07820 -16.95322 -16.09580 -15.95860 -15.72185 -15.62883 -15.52398 -15.03458 -14.61489 -14.24149 -13.69796 -13.58086 -13.37398 -13.22593 -13.10413 -12.83458 -12.65958 -12.51026 -12.27587 -11.91475 -11.53948 -11.12822 -10.90126 -10.29603 -10.08449 -9.84211 -8.97305 -7.92220 -5.27275 -0.62085 -0.12678 1.46650 1.48012 1.54264 1.58283 2.00292 2.48324 2.49081 2.59777 3.14033 3.25012 3.34780 3.41877 3.56893 3.82071 3.85463 3.99136 4.31091 4.45322 4.48676 4.58518 4.72676 4.75566 4.89004 4.91253 5.05450 5.12682 5.23676 5.49140 5.53521 5.66835 5.89521 6.49109 6.88496 7.14132 7.58304 8.50489 9.24669 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.037907 B = 0.003183 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.469257 B = 8795.249256 C = 9098.783939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.234 4.234 8 H 0.091 0.909 9 N -0.639 5.639 10 C 0.121 3.879 11 C 0.121 3.879 12 N -0.696 5.696 13 C 0.558 3.442 14 O -0.571 6.571 15 C -0.119 4.119 16 C -0.039 4.039 17 C -0.117 4.117 18 C 0.086 3.914 19 F -0.129 7.129 20 C 0.052 3.948 21 F -0.132 7.132 22 C -0.083 4.083 23 C 0.150 3.850 24 H 0.248 0.752 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.414 0.586 29 H 0.159 0.841 30 H 0.184 0.816 31 H 0.169 0.831 32 H 0.027 0.973 33 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 -20.969 -1.830 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.362 4.362 8 H 0.109 0.891 9 N -0.366 5.366 10 C -0.004 4.004 11 C 0.015 3.985 12 N -0.348 5.348 13 C 0.346 3.654 14 O -0.451 6.451 15 C -0.123 4.123 16 C -0.058 4.058 17 C -0.135 4.135 18 C 0.065 3.935 19 F -0.108 7.108 20 C 0.032 3.968 21 F -0.111 7.111 22 C -0.103 4.103 23 C 0.023 3.977 24 H 0.057 0.943 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.116 0.884 28 H 0.252 0.748 29 H 0.177 0.823 30 H 0.201 0.799 31 H 0.187 0.813 32 H 0.045 0.955 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.431 -20.405 -1.129 21.145 hybrid contribution 0.240 0.851 -0.947 1.296 sum -5.191 -19.554 -2.076 20.337 Atomic orbital electron populations 1.70033 1.06619 1.25629 1.58023 1.25695 0.96552 1.01148 1.02784 0.84966 0.78328 0.79139 0.76608 1.18555 1.21956 1.22092 1.19462 0.90992 0.82872 1.42851 0.89147 1.46050 1.03362 1.00867 1.86361 1.23034 0.94977 0.83516 0.98853 1.23252 0.93083 0.83286 0.98888 1.45824 1.38863 1.29514 1.20592 1.18423 0.79366 0.82929 0.84664 1.90793 1.65387 1.67533 1.21434 1.19749 1.00285 0.97057 0.95166 1.21388 0.91532 0.92329 1.00531 1.21304 1.02011 0.97214 0.92964 1.18140 0.94358 0.86637 0.94330 1.91546 1.80256 1.51540 1.87438 1.17559 0.99627 0.97300 0.82326 1.91545 1.92050 1.88296 1.39178 1.21334 0.99718 0.94146 0.95056 1.22634 0.87373 0.91049 0.96624 0.94285 0.91476 0.91502 0.88391 0.74788 0.82299 0.79864 0.81326 0.95496 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.09 11.39 21.65 0.25 -57.85 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 3 Si 0.98 45.48 29.55 68.60 2.03 47.51 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.23 -12.89 10.70 84.04 0.90 -11.99 16 8 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 9 N -0.64 -31.95 3.70 -716.56 -2.65 -34.60 16 10 C 0.12 4.40 8.69 86.49 0.75 5.15 16 11 C 0.12 4.41 4.40 46.75 0.21 4.61 16 12 N -0.70 -18.91 5.32 -450.32 -2.40 -21.31 16 13 C 0.56 15.72 7.77 86.75 0.67 16.39 16 14 O -0.57 -20.84 15.97 -3.91 -0.06 -20.90 16 15 C -0.12 -2.42 5.87 -20.09 -0.12 -2.53 16 16 C -0.04 -0.66 9.59 22.52 0.22 -0.44 16 17 C -0.12 -1.53 10.01 22.26 0.22 -1.31 16 18 C 0.09 1.43 7.31 22.50 0.16 1.59 16 19 F -0.13 -2.36 17.18 44.97 0.77 -1.59 16 20 C 0.05 0.93 7.30 22.37 0.16 1.10 16 21 F -0.13 -2.65 17.18 44.97 0.77 -1.88 16 22 C -0.08 -1.39 9.51 22.56 0.21 -1.18 16 23 C 0.15 7.10 7.33 86.45 0.63 7.73 16 24 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 25 H 0.07 2.25 8.14 -2.38 -0.02 2.24 16 26 H 0.07 2.07 8.11 -2.39 -0.02 2.05 16 27 H 0.10 3.95 7.51 -2.39 -0.02 3.93 16 28 H 0.41 8.29 6.74 -92.71 -0.62 7.67 16 29 H 0.16 2.61 7.65 -2.91 -0.02 2.59 16 30 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 31 H 0.17 2.11 6.40 -2.91 -0.02 2.09 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.03 1.95 7.16 -2.39 -0.02 1.93 16 Total: -1.00 -71.45 299.63 3.74 -67.70 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.54 Total: 7.23 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 4.49 Total: 15.69 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -4.80 Total: -113.76 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.06 Total: -20.90 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 1.54 Total: -3.47 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -71.45 3.74 -67.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030441335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.150 kcal (2) G-P(sol) polarization free energy of solvation -71.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds