Wall clock time and date at job start Tue Mar 31 2020 05:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47450 * 89.99951 * 3 2 1 5 5 H 1.48503 * 109.47360 * 209.99620 * 3 2 1 6 6 H 1.48498 * 109.47360 * 329.99798 * 3 2 1 7 7 C 1.38808 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99929 * 15.17030 * 7 2 1 9 9 N 1.36939 * 120.00203 * 195.17052 * 7 2 1 10 10 C 1.47059 * 136.05734 * 7.45960 * 9 7 2 11 11 C 1.53753 * 87.88943 * 152.96018 * 10 9 7 12 12 N 1.46499 * 114.39484 * 272.67492 * 11 10 9 13 13 C 1.34781 * 120.00166 * 248.58312 * 12 11 10 14 14 O 1.21571 * 119.99803 * 0.02562 * 13 12 11 15 15 C 1.47700 * 119.99974 * 179.97438 * 13 12 11 16 16 C 1.39676 * 120.15668 * 359.73393 * 15 13 12 17 17 C 1.37844 * 119.92569 * 179.69603 * 16 15 13 18 18 C 1.38453 * 120.23911 * 0.59464 * 17 16 15 19 19 C 1.38379 * 120.31240 * 359.68037 * 18 17 16 20 20 F 1.35101 * 119.96606 * 180.02562 * 19 18 17 21 21 C 1.38546 * 120.07425 * 0.02562 * 19 18 17 22 22 F 1.35100 * 120.12314 * 180.02562 * 21 19 18 23 23 C 1.47062 * 136.05593 * 187.82575 * 9 7 2 24 24 H 0.96995 * 120.00365 * 174.90835 * 1 2 3 25 25 H 1.08997 * 113.47135 * 267.69145 * 10 9 7 26 26 H 1.09007 * 113.47198 * 38.13451 * 10 9 7 27 27 H 1.09006 * 114.26898 * 139.79373 * 11 10 9 28 28 H 0.96996 * 120.00014 * 68.58989 * 12 11 10 29 29 H 1.07999 * 120.03683 * 359.97438 * 16 15 13 30 30 H 1.08000 * 119.88115 * 180.27370 * 17 16 15 31 31 H 1.08001 * 119.84332 * 179.69750 * 18 17 16 32 32 H 1.09008 * 113.47329 * 321.86486 * 23 9 7 33 33 H 1.09003 * 113.47086 * 92.30805 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4478 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4984 -2.1213 -0.2438 9 7 3.3438 -1.2227 0.3109 10 6 4.3298 -0.2528 0.8107 11 6 5.1048 -1.4365 1.4125 12 7 4.6736 -1.8202 2.7590 13 6 5.4900 -1.6162 3.8118 14 8 6.5841 -1.1134 3.6441 15 6 5.0550 -2.0026 5.1694 16 6 3.7961 -2.5745 5.3666 17 6 3.3975 -2.9390 6.6348 18 6 4.2358 -2.7291 7.7165 19 6 5.4828 -2.1581 7.5332 20 9 6.2954 -1.9569 8.5936 21 6 5.8991 -1.7923 6.2634 22 9 7.1166 -1.2351 6.0832 23 6 4.4217 -2.2228 0.2849 24 1 -0.4850 -0.8367 -0.0745 25 1 4.8718 0.2629 0.0181 26 1 3.9267 0.4295 1.5592 27 1 6.1875 -1.3606 1.3121 28 1 3.8006 -2.2212 2.8928 29 1 3.1375 -2.7350 4.5259 30 1 2.4256 -3.3853 6.7859 31 1 3.9150 -3.0127 8.7081 32 1 4.0970 -3.2190 0.5854 33 1 4.9881 -2.2265 -0.6465 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030866279.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:28 Heat of formation + Delta-G solvation = -28.604757 kcal Electronic energy + Delta-G solvation = -21587.274685 eV Core-core repulsion = 17865.613375 eV Total energy + Delta-G solvation = -3721.661310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.62923 -48.67295 -40.24883 -38.84414 -37.71426 -33.69427 -32.35537 -31.28017 -30.60680 -27.91268 -25.37091 -24.82208 -23.13965 -22.48934 -20.90792 -19.61799 -18.60697 -17.62569 -17.49082 -17.26081 -16.55101 -16.44450 -15.76065 -15.26690 -15.14024 -14.98519 -14.62863 -14.45888 -14.06845 -13.79203 -13.29892 -13.26488 -13.15532 -12.41393 -12.30812 -12.05182 -11.97436 -11.46561 -11.00253 -10.58332 -10.23627 -9.93508 -9.82572 -9.44704 -9.30847 -9.05197 -8.82722 -8.61044 -7.28352 -6.37750 -3.31769 0.27790 0.61905 2.57096 3.01229 3.38488 3.39873 3.45443 3.55116 3.59346 4.07377 4.27324 4.36806 4.53517 4.54963 4.68295 4.75549 5.07150 5.28001 5.32172 5.37950 5.57825 5.62809 5.78570 5.83652 5.84770 6.13828 6.17354 6.30381 6.35164 6.36419 6.87821 7.02398 7.64534 8.15617 8.25666 8.88945 9.42281 10.28200 11.11695 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.004575 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.193564 B = 6118.985787 C = 6514.057440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.020 4.020 3 Si 1.060 2.940 4 H -0.294 1.294 5 H -0.281 1.281 6 H -0.295 1.295 7 C -0.309 4.309 8 H 0.082 0.918 9 N -0.624 5.624 10 C 0.087 3.913 11 C 0.099 3.901 12 N -0.685 5.685 13 C 0.556 3.444 14 O -0.528 6.528 15 C -0.140 4.140 16 C -0.064 4.064 17 C -0.107 4.107 18 C -0.103 4.103 19 C 0.054 3.946 20 F -0.127 7.127 21 C 0.126 3.874 22 F -0.104 7.104 23 C 0.109 3.891 24 H 0.261 0.739 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.407 0.593 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.050 0.950 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.511 -7.620 14.161 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.219 4.219 3 Si 0.891 3.109 4 H -0.221 1.221 5 H -0.208 1.208 6 H -0.222 1.222 7 C -0.435 4.435 8 H 0.100 0.900 9 N -0.353 5.353 10 C -0.040 4.040 11 C -0.007 4.007 12 N -0.335 5.335 13 C 0.342 3.658 14 O -0.405 6.405 15 C -0.145 4.145 16 C -0.083 4.083 17 C -0.126 4.126 18 C -0.122 4.122 19 C 0.034 3.966 20 F -0.105 7.105 21 C 0.104 3.896 22 F -0.082 7.082 23 C -0.018 4.018 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.124 0.876 28 H 0.243 0.757 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.068 0.932 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.910 -5.590 14.032 17.536 hybrid contribution 0.018 -1.623 -0.039 1.623 sum 8.928 -7.213 13.993 18.098 Atomic orbital electron populations 1.70915 1.05446 1.29586 1.51193 1.25738 0.96440 1.00851 0.98898 0.83803 0.74592 0.75940 0.76548 1.22147 1.20773 1.22231 1.20134 0.80301 0.95933 1.47148 0.89983 1.46419 1.03531 1.07903 1.77411 1.23204 0.90468 0.94005 0.96296 1.22509 0.98564 0.98315 0.81334 1.45361 1.19796 1.62163 1.06169 1.17819 0.84899 0.79257 0.83797 1.90832 1.21034 1.43329 1.85341 1.20048 0.95787 1.05184 0.93443 1.21458 0.93706 0.94382 0.98740 1.21068 1.00427 0.99869 0.91190 1.21286 0.91406 0.97984 1.01509 1.17556 0.91246 1.05379 0.82425 1.91546 1.71866 1.93201 1.53908 1.17657 0.82529 0.97518 0.91858 1.91626 1.39186 1.81594 1.95770 1.22751 0.89515 0.94713 0.94778 0.92828 0.92541 0.92614 0.87602 0.75660 0.83417 0.83363 0.83231 0.93162 0.93118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.32 13.70 55.49 0.76 -27.56 16 2 C -0.02 -0.56 5.50 -17.43 -0.10 -0.66 16 3 Si 1.06 26.24 25.50 -169.99 -4.34 21.90 16 4 H -0.29 -7.10 6.97 56.52 0.39 -6.70 16 5 H -0.28 -6.50 5.66 56.52 0.32 -6.18 16 6 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 7 C -0.31 -8.39 11.03 -15.06 -0.17 -8.55 16 8 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 9 N -0.62 -14.29 3.62 -184.65 -0.67 -14.96 16 10 C 0.09 1.79 5.43 -8.39 -0.05 1.75 16 11 C 0.10 1.71 4.61 -67.68 -0.31 1.39 16 12 N -0.68 -10.81 5.35 -54.48 -0.29 -11.10 16 13 C 0.56 9.03 7.77 -12.39 -0.10 8.94 16 14 O -0.53 -10.26 14.93 5.30 0.08 -10.18 16 15 C -0.14 -1.87 5.88 -104.92 -0.62 -2.48 16 16 C -0.06 -0.64 9.54 -39.19 -0.37 -1.01 16 17 C -0.11 -0.83 10.03 -39.65 -0.40 -1.22 16 18 C -0.10 -0.83 10.01 -39.45 -0.40 -1.23 16 19 C 0.05 0.61 7.30 -39.42 -0.29 0.32 16 20 F -0.13 -1.51 17.18 2.25 0.04 -1.47 16 21 C 0.13 1.72 7.29 -38.90 -0.28 1.44 16 22 F -0.10 -1.68 15.46 2.25 0.03 -1.65 16 23 C 0.11 1.97 8.44 -8.52 -0.07 1.90 16 24 H 0.26 7.83 8.73 -40.82 -0.36 7.47 16 25 H 0.06 1.14 7.02 -51.93 -0.36 0.78 16 26 H 0.06 1.22 6.22 -51.93 -0.32 0.90 16 27 H 0.11 1.73 7.45 -51.93 -0.39 1.35 16 28 H 0.41 5.89 6.79 -40.82 -0.28 5.61 16 29 H 0.15 1.31 6.40 -52.49 -0.34 0.97 16 30 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 291.40 15.07 4.39 4.39 Total: -1.00 -33.27 291.40 -6.18 -39.45 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -3.04 Total: 0.60 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.14 Total: 0.58 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.20 Total: -53.62 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.07 Total: -3.12 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -4.34 Total: 21.90 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.27 -6.18 -39.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030866279.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.843 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds