Wall clock time and date at job start Tue Mar 31 2020 05:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99978 * 2 1 4 4 H 1.48501 * 109.46675 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46922 * 299.99462 * 3 2 1 6 6 H 1.48501 * 109.47002 * 59.99694 * 3 2 1 7 7 C 1.38812 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00123 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49235 * 179.97438 * 9 7 2 11 11 C 1.53947 * 86.11671 * 155.36316 * 10 9 7 12 12 N 1.46502 * 113.73947 * 137.95227 * 11 10 9 13 13 C 1.34770 * 120.00008 * 156.92220 * 12 11 10 14 14 O 1.21583 * 119.99934 * 0.02562 * 13 12 11 15 15 C 1.47572 * 120.00238 * 179.97438 * 13 12 11 16 16 C 1.39737 * 120.13811 * 359.73064 * 15 13 12 17 17 C 1.37733 * 119.90095 * 180.24893 * 16 15 13 18 18 C 1.38760 * 120.19719 * 0.04847 * 17 16 15 19 19 F 1.35100 * 119.86141 * 179.97438 * 18 17 16 20 20 C 1.38503 * 120.28010 * 359.94871 * 18 17 16 21 21 C 1.38186 * 120.09515 * 0.02945 * 20 18 17 22 22 F 1.35098 * 120.09638 * 179.97438 * 21 20 18 23 23 C 1.47815 * 134.45928 * 359.87271 * 9 7 2 24 24 H 0.96998 * 119.99785 * 0.02562 * 1 2 3 25 25 H 1.08999 * 113.76932 * 41.06441 * 10 9 7 26 26 H 1.09003 * 113.77451 * 269.66889 * 10 9 7 27 27 H 1.08994 * 113.74148 * 269.15540 * 11 10 9 28 28 H 0.97000 * 120.00205 * 336.93360 * 12 11 10 29 29 H 1.07995 * 120.04588 * 0.24959 * 16 15 13 30 30 H 1.08003 * 119.90341 * 180.02562 * 17 16 15 31 31 H 1.08005 * 119.95198 * 180.02562 * 20 18 17 32 32 H 1.08998 * 113.76605 * 90.37292 * 23 9 7 33 33 H 1.08997 * 113.83133 * 318.91154 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3469 -4.0829 0.6408 12 7 -0.3334 -5.2613 0.0978 13 6 -1.2733 -5.8931 0.8284 14 8 -1.5569 -5.4848 1.9379 15 6 -1.9590 -7.0798 0.2813 16 6 -1.6400 -7.5475 -0.9963 17 6 -2.2867 -8.6524 -1.5042 18 6 -3.2547 -9.3019 -0.7514 19 9 -3.8852 -10.3848 -1.2565 20 6 -3.5770 -8.8450 0.5157 21 6 -2.9352 -7.7378 1.0371 22 9 -3.2499 -7.2918 2.2729 23 6 -0.1058 -2.7571 0.0024 24 1 -0.4850 0.8400 -0.0004 25 1 2.5623 -4.0324 0.6558 26 1 1.8320 -4.2351 -0.9970 27 1 0.3593 -4.0639 1.7305 28 1 -0.1072 -5.5869 -0.7875 29 1 -0.8876 -7.0434 -1.5845 30 1 -2.0400 -9.0143 -2.4914 31 1 -4.3310 -9.3548 1.0972 32 1 -0.5310 -2.8722 -0.9946 33 1 -0.7188 -2.1399 0.6592 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031337497.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:30 Heat of formation + Delta-G solvation = -36.927257 kcal Electronic energy + Delta-G solvation = -21067.080652 eV Core-core repulsion = 17345.058452 eV Total energy + Delta-G solvation = -3722.022200 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.42860 -49.08120 -40.07887 -38.53863 -37.37146 -33.73506 -32.08500 -31.22572 -30.76108 -27.47645 -24.88590 -24.50449 -23.58507 -22.67584 -20.64177 -19.77938 -18.54954 -17.74926 -17.28976 -16.81720 -16.32634 -16.02248 -15.72247 -15.58022 -15.03142 -14.99049 -14.69914 -14.39765 -14.03773 -13.83738 -13.26044 -12.76558 -12.64006 -12.23530 -11.94840 -11.89199 -11.50481 -11.47791 -10.91924 -10.83002 -10.48898 -10.07070 -9.74260 -9.57550 -9.52086 -9.11333 -8.85058 -8.52016 -6.96287 -5.80765 -3.15153 0.24473 0.63226 2.56204 3.22266 3.37927 3.42645 3.45266 3.45754 3.46459 4.00278 4.14392 4.39282 4.42648 4.55456 4.75549 5.08084 5.28282 5.36623 5.43937 5.51815 5.53033 5.59344 5.63031 5.95900 6.14393 6.30934 6.33825 6.49552 6.65228 7.19334 7.29348 7.51439 7.72783 7.92718 8.37576 8.99163 9.65621 10.51050 11.35931 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.038224 B = 0.003295 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.345066 B = 8494.732875 C = 8797.386268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.227 4.227 8 H 0.083 0.917 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.092 3.908 12 N -0.707 5.707 13 C 0.553 3.447 14 O -0.524 6.524 15 C -0.177 4.177 16 C -0.028 4.028 17 C -0.172 4.172 18 C 0.151 3.849 19 F -0.128 7.128 20 C -0.205 4.205 21 C 0.190 3.810 22 F -0.104 7.104 23 C 0.154 3.846 24 H 0.255 0.745 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.113 0.887 28 H 0.395 0.605 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.030 0.970 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.255 -20.135 -3.767 21.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.354 4.354 8 H 0.101 0.899 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.013 4.013 12 N -0.358 5.358 13 C 0.339 3.661 14 O -0.401 6.401 15 C -0.181 4.181 16 C -0.047 4.047 17 C -0.191 4.191 18 C 0.131 3.869 19 F -0.107 7.107 20 C -0.224 4.224 21 C 0.169 3.831 22 F -0.082 7.082 23 C 0.027 3.973 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.131 0.869 28 H 0.230 0.770 29 H 0.167 0.833 30 H 0.167 0.833 31 H 0.172 0.828 32 H 0.047 0.953 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.430 -19.463 -2.915 20.415 hybrid contribution 0.293 0.590 -0.549 0.858 sum -5.137 -18.872 -3.464 19.863 Atomic orbital electron populations 1.69838 1.05060 1.25446 1.56056 1.24831 0.95704 0.97689 1.02068 0.86014 0.78704 0.83502 0.77315 1.20387 1.21686 1.21577 1.19026 0.90284 0.81550 1.44536 0.89944 1.45716 1.02383 0.99161 1.86062 1.22870 0.94545 0.86911 0.97055 1.24005 0.93357 0.83814 1.00115 1.46047 1.39369 1.30820 1.19574 1.17855 0.80286 0.82539 0.85461 1.90862 1.63704 1.66115 1.19374 1.20350 1.01226 0.99971 0.96548 1.21113 0.96961 0.93805 0.92817 1.21130 0.98204 0.97861 1.01910 1.17496 0.92760 0.84819 0.91833 1.91552 1.80460 1.51691 1.86960 1.21018 1.05349 0.99323 0.96733 1.17286 0.93125 0.91905 0.80780 1.91647 1.90848 1.87928 1.37773 1.22730 0.88217 0.89048 0.97270 0.93531 0.93097 0.94695 0.86912 0.77017 0.83315 0.83322 0.82808 0.95270 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.30 11.39 55.49 0.63 -26.67 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.23 -6.29 10.70 -15.06 -0.16 -6.46 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.61 -15.31 3.70 -177.86 -0.66 -15.97 16 10 C 0.11 2.18 8.69 -2.96 -0.03 2.15 16 11 C 0.09 1.74 4.40 -70.13 -0.31 1.43 16 12 N -0.71 -10.44 5.32 -56.37 -0.30 -10.74 16 13 C 0.55 8.79 7.76 -12.46 -0.10 8.69 16 14 O -0.52 -10.62 14.96 5.29 0.08 -10.54 16 15 C -0.18 -2.14 5.88 -104.91 -0.62 -2.76 16 16 C -0.03 -0.24 9.53 -39.21 -0.37 -0.61 16 17 C -0.17 -1.26 10.00 -39.57 -0.40 -1.65 16 18 C 0.15 1.29 7.30 -39.29 -0.29 1.00 16 19 F -0.13 -1.11 17.26 2.25 0.04 -1.08 16 20 C -0.20 -1.91 9.99 -39.50 -0.39 -2.31 16 21 C 0.19 2.31 7.28 -38.98 -0.28 2.03 16 22 F -0.10 -1.54 15.55 2.25 0.04 -1.51 16 23 C 0.15 3.62 7.33 -2.83 -0.02 3.60 16 24 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.60 8.11 -51.93 -0.42 0.18 16 27 H 0.11 2.35 7.51 -51.93 -0.39 1.96 16 28 H 0.39 4.40 6.74 -40.82 -0.28 4.12 16 29 H 0.15 0.87 6.40 -52.49 -0.34 0.53 16 30 H 0.15 0.71 8.06 -52.48 -0.42 0.29 16 31 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 2.12 7.16 -51.93 -0.37 1.74 16 LS Contribution 297.89 15.07 4.49 4.49 Total: -1.00 -33.56 297.89 -6.80 -40.36 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -3.03 Total: -0.18 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -3.06 Total: 4.85 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.33 Total: -53.38 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.07 Total: -2.58 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.56 -6.80 -40.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031337497.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.430 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds