Wall clock time and date at job start Tue Mar 31 2020 05:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48497 * 109.47359 * 355.35744 * 3 2 1 5 5 H 1.48503 * 109.47030 * 115.35999 * 3 2 1 6 6 H 1.48505 * 109.46945 * 235.35849 * 3 2 1 7 7 C 1.38816 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99662 * 352.25981 * 7 2 1 9 9 N 1.36935 * 119.99877 * 172.25761 * 7 2 1 10 10 C 1.47070 * 136.05569 * 6.39398 * 9 7 2 11 11 C 1.53757 * 87.88788 * 152.96246 * 10 9 7 12 12 N 1.46499 * 114.26765 * 139.78933 * 11 10 9 13 13 C 1.34775 * 120.00123 * 111.47706 * 12 11 10 14 14 O 1.21558 * 119.99627 * 359.97438 * 13 12 11 15 15 C 1.47856 * 120.00220 * 180.02562 * 13 12 11 16 16 C 1.39547 * 120.11903 * 359.71970 * 15 13 12 17 17 C 1.38201 * 119.87473 * 179.81049 * 16 15 13 18 18 F 1.35102 * 119.94003 * 180.23088 * 17 16 15 19 19 C 1.38531 * 120.12376 * 0.44825 * 17 16 15 20 20 C 1.38529 * 120.23942 * 359.78589 * 19 17 16 21 21 F 1.35111 * 119.93707 * 179.97438 * 20 19 17 22 22 C 1.38199 * 120.12464 * 359.97438 * 20 19 17 23 23 C 1.47066 * 136.05905 * 186.76278 * 9 7 2 24 24 H 0.97004 * 120.00412 * 184.87714 * 1 2 3 25 25 H 1.09004 * 113.46535 * 267.69639 * 10 9 7 26 26 H 1.08996 * 113.46991 * 38.13336 * 10 9 7 27 27 H 1.08993 * 114.39362 * 272.67803 * 11 10 9 28 28 H 0.97001 * 120.00057 * 291.47548 * 12 11 10 29 29 H 1.07996 * 120.06198 * 0.02840 * 16 15 13 30 30 H 1.08000 * 119.88272 * 179.76060 * 19 17 16 31 31 H 1.08003 * 120.06177 * 179.97438 * 22 20 19 32 32 H 1.09001 * 113.46790 * 321.86691 * 23 9 7 33 33 H 1.09000 * 113.46631 * 92.30253 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2892 2.7442 -0.1133 5 1 3.0170 1.7466 1.2652 6 1 3.1869 1.6484 -1.1519 7 6 2.0102 -1.2022 0.0005 8 1 1.4776 -2.1331 0.1269 9 7 3.3702 -1.2077 -0.1592 10 6 4.4312 -0.1923 -0.2389 11 6 5.4059 -1.2502 0.3041 12 7 6.7259 -1.2352 -0.3312 13 6 7.8078 -0.8461 0.3720 14 8 7.6882 -0.5073 1.5332 15 6 9.1400 -0.8304 -0.2693 16 6 9.2808 -1.2234 -1.6009 17 6 10.5277 -1.2031 -2.1965 18 9 10.6648 -1.5788 -3.4869 19 6 11.6380 -0.8023 -1.4714 20 6 11.5047 -0.4158 -0.1479 21 9 12.5918 -0.0265 0.5537 22 6 10.2618 -0.4276 0.4563 23 6 4.4119 -2.2311 -0.3331 24 1 -0.4851 -0.8370 0.0714 25 1 4.6554 0.1221 -1.2583 26 1 4.2793 0.6483 0.4381 27 1 5.4518 -1.3039 1.3917 28 1 6.8212 -1.5052 -1.2580 29 1 8.4164 -1.5396 -2.1659 30 1 12.6112 -0.7915 -1.9396 31 1 10.1590 -0.1264 1.4884 32 1 4.2436 -3.1276 0.2637 33 1 4.6311 -2.4543 -1.3773 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031356368.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:32 Heat of formation + Delta-G solvation = -29.941766 kcal Electronic energy + Delta-G solvation = -20993.460633 eV Core-core repulsion = 17271.741346 eV Total energy + Delta-G solvation = -3721.719287 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.45222 -49.42233 -40.48074 -38.89396 -37.77430 -34.07719 -32.36959 -31.49695 -30.76355 -27.87669 -25.48501 -25.00923 -23.32998 -22.51696 -20.83350 -20.06561 -18.76445 -17.68737 -17.52500 -16.95164 -16.60811 -16.45481 -16.31347 -15.79964 -15.73403 -15.44860 -14.88741 -14.79755 -14.28390 -13.85497 -13.22811 -13.16108 -12.55251 -12.41656 -12.34888 -12.22199 -12.07814 -11.69107 -11.50818 -10.64884 -10.44371 -10.15483 -9.69510 -9.60351 -9.28014 -9.27210 -8.93528 -8.70457 -7.25663 -6.39342 -3.31860 0.10784 0.46338 2.34668 2.87280 3.24552 3.38729 3.39486 3.42998 3.62501 3.82581 4.09803 4.25635 4.49101 4.52308 4.54390 4.71512 4.95534 5.03125 5.25032 5.34411 5.37340 5.46994 5.59259 5.65985 5.77060 6.05600 6.17657 6.18067 6.21828 6.24436 6.82435 6.97736 7.41221 8.05731 8.16721 8.89832 9.41479 10.24667 11.13372 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.003660 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.157268 B = 7647.958378 C = 7971.828713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.021 4.021 3 Si 1.070 2.930 4 H -0.293 1.293 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.309 4.309 8 H 0.086 0.914 9 N -0.620 5.620 10 C 0.087 3.913 11 C 0.099 3.901 12 N -0.705 5.705 13 C 0.557 3.443 14 O -0.525 6.525 15 C -0.069 4.069 16 C -0.133 4.133 17 C 0.127 3.873 18 F -0.127 7.127 19 C -0.172 4.172 20 C 0.126 3.874 21 F -0.126 7.126 22 C -0.106 4.106 23 C 0.117 3.883 24 H 0.262 0.738 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.126 0.874 28 H 0.400 0.600 29 H 0.149 0.851 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.054 0.946 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.901 -2.916 -4.419 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.220 4.220 3 Si 0.902 3.098 4 H -0.221 1.221 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.435 4.435 8 H 0.103 0.897 9 N -0.349 5.349 10 C -0.040 4.040 11 C -0.006 4.006 12 N -0.355 5.355 13 C 0.342 3.658 14 O -0.402 6.402 15 C -0.072 4.072 16 C -0.153 4.153 17 C 0.107 3.893 18 F -0.105 7.105 19 C -0.192 4.192 20 C 0.106 3.894 21 F -0.105 7.105 22 C -0.126 4.126 23 C -0.011 4.011 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.143 0.857 28 H 0.235 0.765 29 H 0.167 0.833 30 H 0.171 0.829 31 H 0.176 0.824 32 H 0.072 0.928 33 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 24.321 -1.044 -3.628 24.612 hybrid contribution 0.499 -1.844 -0.702 2.036 sum 24.820 -2.888 -4.330 25.360 Atomic orbital electron populations 1.70928 1.05310 1.29548 1.51370 1.25761 0.96411 1.01034 0.98797 0.83706 0.73798 0.75925 0.76376 1.22065 1.21892 1.21413 1.20109 0.78030 0.96002 1.49318 0.89673 1.45681 1.02145 1.01725 1.85307 1.23250 0.87544 0.94452 0.98757 1.23651 0.78143 0.99410 0.99440 1.45959 1.07556 1.66530 1.15501 1.17985 0.83599 0.77958 0.86223 1.90822 1.85852 1.47276 1.16291 1.19681 0.94272 1.00143 0.93116 1.21405 0.97173 1.01671 0.95010 1.17059 0.93330 0.99461 0.79402 1.91572 1.96514 1.88663 1.33746 1.21216 1.00321 1.03792 0.93835 1.17098 0.83411 0.99404 0.89453 1.91570 1.52395 1.88274 1.78238 1.21334 0.89645 0.99324 1.02315 1.22645 0.87026 0.93794 0.97631 0.92787 0.93413 0.92560 0.85670 0.76479 0.83314 0.82927 0.82417 0.92817 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.15 13.70 55.49 0.76 -28.38 16 2 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 3 Si 1.07 26.77 25.13 -169.99 -4.27 22.50 16 4 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.29 -7.02 6.65 56.52 0.38 -6.64 16 6 H -0.29 -6.64 6.13 56.52 0.35 -6.30 16 7 C -0.31 -8.78 11.08 -15.06 -0.17 -8.94 16 8 H 0.09 2.53 8.05 -52.49 -0.42 2.11 16 9 N -0.62 -14.84 3.70 -184.60 -0.68 -15.52 16 10 C 0.09 1.79 5.53 -8.37 -0.05 1.74 16 11 C 0.10 1.67 4.62 -67.67 -0.31 1.35 16 12 N -0.70 -9.04 5.34 -54.43 -0.29 -9.33 16 13 C 0.56 7.45 7.77 -12.33 -0.10 7.36 16 14 O -0.53 -8.98 15.94 5.31 0.08 -8.90 16 15 C -0.07 -0.70 5.87 -104.99 -0.62 -1.32 16 16 C -0.13 -1.09 9.52 -39.11 -0.37 -1.46 16 17 C 0.13 1.02 7.29 -39.49 -0.29 0.73 16 18 F -0.13 -1.08 17.26 2.25 0.04 -1.04 16 19 C -0.17 -1.28 10.00 -39.37 -0.39 -1.68 16 20 C 0.13 1.09 7.29 -39.49 -0.29 0.80 16 21 F -0.13 -1.15 17.26 2.25 0.04 -1.11 16 22 C -0.11 -1.04 9.57 -39.11 -0.37 -1.41 16 23 C 0.12 2.11 8.44 -8.50 -0.07 2.04 16 24 H 0.26 8.08 8.73 -40.82 -0.36 7.72 16 25 H 0.05 0.94 7.73 -51.93 -0.40 0.54 16 26 H 0.06 1.25 4.65 -51.93 -0.24 1.01 16 27 H 0.13 2.28 7.45 -51.93 -0.39 1.90 16 28 H 0.40 3.85 6.79 -40.82 -0.28 3.58 16 29 H 0.15 0.93 6.40 -52.49 -0.34 0.59 16 30 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.16 1.57 7.65 -52.48 -0.40 1.16 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.66 8.13 -51.93 -0.42 0.23 16 LS Contribution 292.49 15.07 4.41 4.41 Total: -1.00 -33.09 292.49 -6.00 -39.09 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -2.97 Total: -0.22 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -3.12 Total: -1.49 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.21 Total: -53.23 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.08 Total: -8.90 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.08 Total: -2.15 kcal Atomic # 14 Polarization: 26.77 SS G_CDS: -4.27 Total: 22.50 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.09 -6.00 -39.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031356368.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.148 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds