Wall clock time and date at job start Tue Mar 31 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30865 * 126.07147 * 2 1 4 4 N 1.28450 * 110.93039 * 179.97438 * 3 2 1 5 5 C 1.46492 * 125.18800 * 180.02562 * 4 3 2 6 6 C 1.36603 * 109.61653 * 0.02562 * 4 3 2 7 7 C 1.47160 * 126.87946 * 180.26268 * 6 4 3 8 8 O 1.21625 * 120.00055 * 90.79367 * 7 6 4 9 9 N 1.34780 * 119.99950 * 270.79245 * 7 6 4 10 10 C 1.46495 * 119.99948 * 5.12800 * 9 7 6 11 11 C 1.46497 * 119.99838 * 185.13442 * 9 7 6 12 12 C 1.50702 * 109.47549 * 89.99478 * 11 9 7 13 13 H 1.08002 * 119.99621 * 0.02562 * 12 11 9 14 14 C 1.37871 * 120.00038 * 179.97438 * 12 11 9 15 15 N 1.31520 * 120.00334 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00014 * 180.02562 * 14 12 11 17 17 H 1.48489 * 109.47203 * 90.00023 * 16 14 12 18 18 H 1.48499 * 109.46872 * 210.00037 * 16 14 12 19 19 H 1.48498 * 109.46952 * 329.99562 * 16 14 12 20 20 C 1.38402 * 106.23287 * 359.97438 * 6 4 3 21 21 N 1.48013 * 127.32124 * 180.02562 * 20 6 4 22 22 O 1.21795 * 120.00007 * 89.99735 * 21 20 6 23 23 O 1.21802 * 119.99833 * 270.00761 * 21 20 6 24 24 H 1.09000 * 109.46933 * 269.99896 * 1 2 3 25 25 H 1.08996 * 109.47001 * 29.99973 * 1 2 3 26 26 H 1.08998 * 109.46858 * 149.99796 * 1 2 3 27 27 H 1.09001 * 109.47520 * 274.87921 * 5 4 3 28 28 H 1.08999 * 109.47953 * 34.88019 * 5 4 3 29 29 H 1.09004 * 109.47244 * 154.88057 * 5 4 3 30 30 H 1.08995 * 109.47476 * 84.58598 * 10 9 7 31 31 H 1.08999 * 109.46895 * 204.58323 * 10 9 7 32 32 H 1.09003 * 109.47363 * 324.58317 * 10 9 7 33 33 H 1.09003 * 109.47326 * 209.99793 * 11 9 7 34 34 H 1.09001 * 109.47166 * 329.99366 * 11 9 7 35 35 H 0.96998 * 120.00469 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2775 1.0578 0.0000 4 7 3.5174 0.7223 0.0005 5 6 4.6450 1.6574 0.0012 6 6 3.6240 -0.6396 0.0004 7 6 4.8664 -1.4282 0.0062 8 8 5.3668 -1.7670 1.0618 9 7 5.4499 -1.7751 -1.1582 10 6 4.9118 -1.2737 -2.4251 11 6 6.6223 -2.6536 -1.1568 12 6 6.1740 -4.0898 -1.2442 13 1 5.1211 -4.3246 -1.2961 14 6 7.1080 -5.1038 -1.2591 15 7 8.3903 -4.8178 -1.1974 16 14 6.5524 -6.8839 -1.3682 17 1 6.4581 -7.2865 -2.7943 18 1 7.5355 -7.7528 -0.6726 19 1 5.2221 -7.0276 -0.7241 20 6 2.3294 -1.1290 0.0003 21 7 1.9062 -2.5474 0.0006 22 8 1.7320 -3.1306 1.0555 23 8 1.7324 -3.1313 -1.0541 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 4.8694 1.9569 -1.0225 28 1 4.3863 2.5382 0.5889 29 1 5.5185 1.1731 0.4378 30 1 5.3214 -0.2842 -2.6277 31 1 5.1878 -1.9533 -3.2313 32 1 3.8256 -1.2107 -2.3589 33 1 7.2543 -2.4175 -2.0129 34 1 7.1869 -2.5046 -0.2364 35 1 9.0475 -5.5311 -1.2083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115926673.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:34 Heat of formation + Delta-G solvation = 50.787485 kcal Electronic energy + Delta-G solvation = -22951.784801 eV Core-core repulsion = 19376.946464 eV Total energy + Delta-G solvation = -3574.838337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.30531 -41.55421 -39.17052 -36.22229 -35.27321 -34.71534 -32.82877 -31.78246 -30.24094 -28.26773 -27.36802 -26.15074 -25.19528 -23.90132 -21.96174 -21.26097 -19.36201 -18.55475 -18.51180 -17.23758 -17.09779 -16.81977 -16.56998 -15.71404 -15.59244 -14.52399 -14.41983 -13.97023 -13.77982 -13.40647 -13.06773 -12.85752 -12.74133 -12.64282 -12.28425 -12.15087 -11.53784 -11.41477 -11.36343 -10.99582 -10.91726 -10.83950 -10.68965 -10.29856 -9.90612 -9.75850 -9.64242 -9.46208 -8.52337 -8.07593 -6.14940 -4.20935 0.74493 0.98903 1.25281 1.81155 2.03565 2.67393 3.28721 3.30734 3.37054 3.46708 3.92539 4.22841 4.41131 4.43182 4.69600 4.70951 4.81922 5.01872 5.20884 5.24125 5.26538 5.36638 5.40027 5.57569 5.70216 5.98698 6.10261 6.52456 6.67035 7.05707 7.21918 7.39938 7.79736 7.84318 7.87860 8.04418 8.33825 8.83617 9.45919 10.93260 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.020038 B = 0.006214 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.030406 B = 4504.668371 C = 5374.288805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.090 3.910 3 N -0.268 5.268 4 N -0.257 5.257 5 C 0.084 3.916 6 C 0.076 3.924 7 C 0.558 3.442 8 O -0.503 6.503 9 N -0.574 5.574 10 C 0.076 3.924 11 C 0.243 3.757 12 C -0.536 4.536 13 H 0.061 0.939 14 C 0.066 3.934 15 N -0.894 5.894 16 Si 0.900 3.100 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.269 1.269 20 C -0.126 4.126 21 N 0.051 4.949 22 O -0.129 6.129 23 O -0.126 6.126 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.769 14.467 -1.436 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 N -0.099 5.099 4 N -0.042 5.042 5 C -0.055 4.055 6 C -0.059 4.059 7 C 0.338 3.662 8 O -0.377 6.377 9 N -0.305 5.305 10 C -0.067 4.067 11 C 0.126 3.874 12 C -0.575 4.575 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.532 5.532 16 Si 0.727 3.273 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.219 4.219 21 N 0.584 4.416 22 O -0.352 6.352 23 O -0.350 6.350 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.910 16.241 -0.888 19.047 hybrid contribution -0.230 -2.123 -0.134 2.140 sum -10.141 14.118 -1.022 17.412 Atomic orbital electron populations 1.20304 0.84843 1.04360 1.04089 1.21758 0.97606 0.85187 1.02471 1.73280 0.89002 1.25444 1.22210 1.45564 1.05806 1.03393 1.49481 1.22465 0.84791 0.92673 1.05615 1.21696 0.95248 0.85446 1.03524 1.16952 0.82080 0.81274 0.85855 1.90902 1.61792 1.54628 1.30408 1.48270 1.31076 1.47121 1.03991 1.21787 0.98307 0.99184 0.87454 1.19563 0.80754 0.87813 0.99307 1.21385 0.93700 0.90419 1.51953 0.92069 1.24907 0.94668 0.99641 0.94487 1.69922 1.00264 1.33279 1.49733 0.86444 0.78948 0.83666 0.78275 1.20373 1.20967 1.19363 1.21011 0.93380 0.83625 1.23932 1.42270 0.98152 1.00724 1.00455 1.94577 1.53192 1.66596 1.20844 1.94571 1.53107 1.66554 1.20812 0.89412 0.89238 0.90252 0.88417 0.87341 0.87723 0.93259 0.89105 0.92537 0.93916 0.93260 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.45 36.00 0.38 -0.40 16 2 C 0.09 1.26 7.22 -82.47 -0.60 0.67 16 3 N -0.27 -3.61 11.90 33.64 0.40 -3.21 16 4 N -0.26 -3.51 3.75 -63.89 -0.24 -3.75 16 5 C 0.08 0.74 11.22 59.84 0.67 1.41 16 6 C 0.08 1.33 4.91 -82.06 -0.40 0.92 16 7 C 0.56 11.84 6.85 -12.64 -0.09 11.75 16 8 O -0.50 -12.71 16.66 5.26 0.09 -12.62 16 9 N -0.57 -11.96 2.86 -184.34 -0.53 -12.49 16 10 C 0.08 1.22 10.22 59.84 0.61 1.83 16 11 C 0.24 6.14 5.18 -5.19 -0.03 6.11 16 12 C -0.54 -15.14 9.39 -34.44 -0.32 -15.47 16 13 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 14 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 15 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 16 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 C -0.13 -2.21 6.78 -79.35 -0.54 -2.75 16 21 N 0.05 1.00 4.45 34.25 0.15 1.16 16 22 O -0.13 -2.65 19.25 -29.46 -0.57 -3.21 16 23 O -0.13 -2.51 19.26 -29.46 -0.57 -3.08 16 24 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.10 1.00 7.65 -51.93 -0.40 0.60 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 32 H 0.06 0.88 6.91 -51.93 -0.36 0.52 16 33 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 34 H 0.05 1.38 7.36 -51.93 -0.38 1.00 16 35 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 322.94 15.07 4.87 4.87 Total: -1.00 -34.72 322.94 -5.15 -39.87 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: -4.06 Total: -5.20 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -0.41 Total: 5.86 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.52 Total: -43.54 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -1.05 Total: -18.91 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.72 -5.15 -39.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115926673.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.656 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds