Wall clock time and date at job start Tue Mar 31 2020 05:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34783 * 116.99673 * 2 1 4 4 O 1.21531 * 120.00277 * 0.02562 * 3 2 1 5 5 C 1.47273 * 119.99834 * 180.02562 * 3 2 1 6 6 N 1.36106 * 126.45953 * 0.02562 * 5 3 2 7 7 C 1.29924 * 108.47427 * 179.97438 * 6 5 3 8 8 O 1.34050 * 109.25924 * 0.02562 * 7 6 5 9 9 C 1.34227 * 108.24708 * 359.97438 * 8 7 6 10 10 C 1.50698 * 126.53317 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.47554 * 269.97901 * 10 9 8 12 12 C 1.50698 * 109.47554 * 179.97438 * 11 10 9 13 13 O 1.21285 * 119.99492 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00061 * 179.97438 * 12 11 10 15 15 C 1.46498 * 119.99622 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.46905 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99806 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99724 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99780 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00196 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47140 * 90.00170 * 20 18 16 22 22 H 1.48507 * 109.47159 * 210.00015 * 20 18 16 23 23 H 1.48494 * 109.47276 * 329.99755 * 20 18 16 24 24 H 1.08993 * 109.47692 * 59.99473 * 1 2 3 25 25 H 1.08996 * 109.47054 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46780 * 299.99204 * 1 2 3 27 27 H 1.07997 * 125.36643 * 180.02562 * 7 6 5 28 28 H 1.08999 * 109.47030 * 29.98235 * 10 9 8 29 29 H 1.09004 * 109.46858 * 149.97356 * 10 9 8 30 30 H 1.09007 * 109.47069 * 299.99936 * 11 10 9 31 31 H 1.08996 * 109.47632 * 59.99558 * 11 10 9 32 32 H 0.96993 * 119.99974 * 0.02562 * 14 12 11 33 33 H 1.08994 * 109.47478 * 299.99983 * 15 14 12 34 34 H 1.09003 * 109.47511 * 60.00344 * 15 14 12 35 35 H 0.96993 * 119.99921 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2010 0.0000 4 8 1.4019 2.2202 0.0005 5 6 3.5345 1.2781 -0.0006 6 7 4.3996 0.2273 -0.0016 7 6 5.6126 0.6926 -0.0024 8 8 5.5722 2.0325 -0.0013 9 6 4.2853 2.4142 -0.0004 10 6 3.7696 3.8301 0.0005 11 6 3.5954 4.3087 1.4431 12 6 3.0802 5.7249 1.4440 13 8 2.8724 6.2951 0.3939 14 7 2.8495 6.3574 2.6115 15 6 2.3492 7.7343 2.6122 16 6 2.1764 8.2052 4.0333 17 1 2.4149 7.5447 4.8538 18 6 1.7127 9.4789 4.2859 19 7 1.5623 9.8900 5.5261 20 14 1.2982 10.6205 2.8667 21 1 -0.1274 10.4443 2.4898 22 1 1.5307 12.0280 3.2794 23 1 2.1616 10.2970 1.7027 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 6.5117 0.0942 -0.0037 28 1 4.4813 4.4763 -0.5133 29 1 2.8089 3.8671 -0.5132 30 1 2.8836 3.6625 1.9569 31 1 4.5560 4.2716 1.9568 32 1 3.0154 5.9012 3.4513 33 1 3.0619 8.3801 2.0993 34 1 1.3889 7.7723 2.0980 35 1 1.2358 10.7859 5.7038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118700431.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:32 Heat of formation + Delta-G solvation = -103.640107 kcal Electronic energy + Delta-G solvation = -21355.630056 eV Core-core repulsion = 17741.802485 eV Total energy + Delta-G solvation = -3613.827571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.83723 -40.40375 -39.08240 -36.74957 -35.22571 -34.54248 -33.94227 -32.36505 -30.18158 -28.41707 -27.74252 -25.29745 -24.15675 -22.44919 -21.74768 -20.85089 -19.86025 -18.62853 -17.60006 -17.27153 -17.06862 -16.37223 -16.33920 -15.89869 -15.63259 -15.25651 -14.78350 -14.23149 -13.94487 -13.58472 -13.55339 -13.30661 -12.88644 -12.37067 -12.33547 -12.24220 -12.11550 -11.74864 -11.36120 -11.14204 -11.02200 -11.01149 -10.76985 -10.71947 -9.98051 -9.53272 -9.46818 -9.17213 -8.78780 -8.18012 -6.22199 -4.24614 0.62092 1.58372 2.06994 2.46296 2.76190 3.17639 3.26988 3.33286 3.41518 3.68556 3.88239 4.30325 4.33432 4.53737 4.81072 4.86260 4.89129 4.98618 5.04718 5.13012 5.25078 5.29696 5.42550 5.60440 5.66528 5.85420 5.89331 6.13380 6.79309 7.04068 7.06112 7.19099 7.37651 7.51492 8.10581 8.48902 8.73254 8.88747 9.37742 10.89758 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.023076 B = 0.003460 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.084943 B = 8089.966400 C = 8698.512245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.341 6.341 3 C 0.551 3.449 4 O -0.487 6.487 5 C -0.067 4.067 6 N -0.448 5.448 7 C 0.175 3.825 8 O -0.191 6.191 9 C 0.073 3.927 10 C -0.033 4.033 11 C -0.134 4.134 12 C 0.506 3.494 13 O -0.557 6.557 14 N -0.704 5.704 15 C 0.220 3.780 16 C -0.544 4.544 17 H 0.080 0.920 18 C 0.077 3.923 19 N -0.892 5.892 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.261 1.261 24 H 0.065 0.935 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.259 0.741 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.397 0.603 33 H 0.026 0.974 34 H 0.022 0.978 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.799 -21.060 -10.761 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.256 6.256 3 C 0.394 3.606 4 O -0.374 6.374 5 C -0.184 4.184 6 N -0.176 5.176 7 C -0.054 4.054 8 O -0.077 6.077 9 C 0.016 3.984 10 C -0.071 4.071 11 C -0.175 4.175 12 C 0.290 3.710 13 O -0.437 6.437 14 N -0.352 5.352 15 C 0.097 3.903 16 C -0.582 4.582 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.530 5.530 20 Si 0.704 3.296 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.185 1.185 24 H 0.084 0.916 25 H 0.122 0.878 26 H 0.086 0.914 27 H 0.274 0.726 28 H 0.119 0.881 29 H 0.144 0.856 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.231 0.769 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.178 -20.804 -11.367 24.265 hybrid contribution -0.036 0.895 -0.081 0.899 sum 5.142 -19.909 -11.448 23.535 Atomic orbital electron populations 1.23363 0.75585 1.03941 1.02997 1.86636 1.23555 1.31559 1.83876 1.19378 0.86101 0.82010 0.73115 1.90956 1.65338 1.35617 1.45488 1.20230 0.92486 0.89349 1.16352 1.70839 0.99929 1.31100 1.15780 1.28138 0.98453 0.77988 1.00792 1.84452 1.28077 1.26357 1.68846 1.23956 0.80114 0.97978 0.96343 1.20277 1.03909 0.84329 0.98563 1.21574 1.03511 0.95741 0.96640 1.20215 0.78660 0.87487 0.84604 1.90664 1.53464 1.68108 1.31436 1.46163 1.64908 1.16821 1.07304 1.19514 0.94386 0.78078 0.98282 1.21095 1.46357 1.00256 0.90510 0.90249 1.24803 0.94346 0.97667 0.95826 1.69883 1.45353 1.19016 1.18716 0.86808 0.79760 0.80085 0.82981 1.19819 1.20894 1.18492 0.91595 0.87822 0.91439 0.72589 0.88120 0.85629 0.88601 0.88748 0.76920 0.95613 0.96047 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.57 101.05 1.07 1.36 16 2 O -0.34 -4.11 10.58 -40.72 -0.43 -4.54 16 3 C 0.55 7.41 7.96 34.40 0.27 7.68 16 4 O -0.49 -7.39 14.60 -19.29 -0.28 -7.67 16 5 C -0.07 -0.84 7.04 -83.04 -0.58 -1.42 16 6 N -0.45 -5.07 11.36 -11.50 -0.13 -5.20 16 7 C 0.18 1.35 13.19 51.96 0.69 2.03 16 8 O -0.19 -1.85 10.72 6.59 0.07 -1.78 16 9 C 0.07 0.85 6.70 -35.05 -0.23 0.62 16 10 C -0.03 -0.43 4.50 -27.89 -0.13 -0.55 16 11 C -0.13 -1.80 5.68 -27.89 -0.16 -1.96 16 12 C 0.51 9.43 7.83 -10.99 -0.09 9.34 16 13 O -0.56 -12.35 15.98 5.55 0.09 -12.26 16 14 N -0.70 -14.18 5.55 -61.47 -0.34 -14.52 16 15 C 0.22 5.41 4.50 -5.19 -0.02 5.38 16 16 C -0.54 -14.95 9.83 -34.44 -0.34 -15.29 16 17 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 20 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.26 0.51 8.06 -52.49 -0.42 0.09 16 28 H 0.10 1.23 8.10 -51.93 -0.42 0.81 16 29 H 0.13 1.82 6.44 -51.93 -0.33 1.49 16 30 H 0.10 1.22 8.14 -51.92 -0.42 0.80 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.40 7.02 8.32 -40.82 -0.34 6.68 16 33 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 34 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 35 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 316.76 15.07 4.77 4.77 Total: -1.00 -35.34 316.76 -3.74 -39.09 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -3.98 Total: 1.77 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 0.38 Total: 9.29 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.30 Total: -45.48 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.55 Total: -26.25 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.34 -3.74 -39.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118700431.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.551 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds