Wall clock time and date at job start Tue Mar 31 2020 05:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00215 * 2 1 4 4 H 1.48500 * 109.47160 * 239.99958 * 3 2 1 5 5 H 1.48507 * 109.47065 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47132 * 120.00036 * 3 2 1 7 7 C 1.37876 * 120.00094 * 180.02562 * 2 1 3 8 8 C 1.51274 * 120.84766 * 0.02562 * 7 2 1 9 9 C 1.53237 * 108.53501 * 231.32564 * 8 7 2 10 10 C 1.52958 * 109.40281 * 305.36824 * 9 8 7 11 11 H 1.09004 * 109.41484 * 303.56819 * 10 9 8 12 12 N 1.46499 * 109.41227 * 183.70603 * 10 9 8 13 13 C 1.38547 * 119.99684 * 155.27810 * 12 10 9 14 14 C 1.39580 * 120.47787 * 359.44889 * 13 12 10 15 15 C 1.38293 * 118.47868 * 179.73470 * 14 13 12 16 16 Cl 1.73595 * 120.37386 * 180.23873 * 15 14 13 17 17 N 1.32635 * 119.25596 * 0.53455 * 15 14 13 18 18 C 1.32459 * 120.90741 * 359.72832 * 17 15 14 19 19 N 1.38400 * 119.16993 * 179.97438 * 18 17 15 20 20 N 1.32463 * 121.66586 * 359.97438 * 18 17 15 21 21 C 1.52966 * 109.81284 * 63.60053 * 10 9 8 22 22 C 1.51268 * 120.85342 * 179.97438 * 7 2 1 23 23 H 0.97001 * 119.99523 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.62744 * 111.61154 * 8 7 2 25 25 H 1.08999 * 109.78119 * 351.12653 * 8 7 2 26 26 H 1.09000 * 109.47716 * 185.38924 * 9 8 7 27 27 H 1.08999 * 109.49174 * 65.35711 * 9 8 7 28 28 H 0.97001 * 119.99790 * 334.99740 * 12 10 9 29 29 H 1.08000 * 120.76659 * 359.97438 * 14 13 12 30 30 H 0.96998 * 120.00095 * 180.02562 * 19 18 17 31 31 H 0.97003 * 119.99808 * 0.02562 * 19 18 17 32 32 H 1.08991 * 109.48424 * 56.38178 * 21 10 9 33 33 H 1.09001 * 109.47760 * 176.42336 * 21 10 9 34 34 H 1.09002 * 109.62401 * 248.38943 * 22 7 2 35 35 H 1.08999 * 109.62327 * 8.76854 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 6 1.2676 -2.5152 -0.0017 9 6 1.8228 -3.3836 1.1322 10 6 3.3398 -3.5079 0.9809 11 1 3.5738 -3.9112 -0.0044 12 7 3.8597 -4.4094 2.0121 13 6 5.0525 -5.0833 1.8057 14 6 5.7611 -4.9196 0.6143 15 6 6.9498 -5.6080 0.4542 16 17 7.8741 -5.4358 -1.0051 17 7 7.3728 -6.4057 1.4257 18 6 6.6758 -6.5453 2.5434 19 7 7.1505 -7.3877 3.5336 20 7 5.5360 -5.8991 2.7374 21 6 3.9906 -2.1320 1.1333 22 6 3.5170 -1.2165 -0.0011 23 1 -0.4849 0.8401 0.0004 24 1 1.4199 -3.0184 -0.9564 25 1 0.2029 -2.3438 0.1562 26 1 1.3704 -4.3742 1.0862 27 1 1.5897 -2.9217 2.0916 28 1 3.3709 -4.5313 2.8410 29 1 5.3916 -4.2673 -0.1631 30 1 6.6496 -7.4993 4.3568 31 1 7.9841 -7.8667 3.4044 32 1 3.7063 -1.6996 2.0925 33 1 5.0747 -2.2357 1.0880 34 1 3.8771 -1.5999 -0.9559 35 1 3.8982 -0.2074 0.1555 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050562.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:07 Heat of formation + Delta-G solvation = 32.663190 kcal Electronic energy + Delta-G solvation = -19716.350264 eV Core-core repulsion = 16581.435163 eV Total energy + Delta-G solvation = -3134.915101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.79813 -37.97945 -36.81255 -35.35357 -34.09796 -32.73245 -31.24352 -29.99604 -29.36421 -27.19934 -23.81852 -23.33817 -21.68151 -21.49750 -19.69103 -18.37570 -18.01329 -16.41133 -15.83678 -15.63446 -15.25520 -15.04791 -14.79584 -14.51329 -14.14289 -13.47043 -12.99366 -12.65663 -12.43674 -12.21971 -11.91239 -11.51221 -11.36728 -11.11390 -10.84076 -10.77543 -10.70602 -10.26338 -10.23001 -10.07626 -9.79074 -9.18989 -9.08339 -8.89087 -8.58276 -8.54681 -7.80073 -6.18746 -4.10688 1.19409 1.55712 1.69502 2.99378 3.24362 3.31782 3.32626 3.50861 4.00639 4.31920 4.74789 4.92618 5.09044 5.37266 5.46782 5.56612 5.67166 5.91298 6.00768 6.33482 6.40663 6.57273 6.61252 6.71791 6.80390 6.91132 6.97599 7.08807 7.24704 7.29000 7.43653 7.54411 7.60030 7.72441 7.85980 8.27258 8.48993 8.86545 9.45761 10.90736 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023470 B = 0.004429 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.733049 B = 6320.404752 C = 6940.939075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.079 3.921 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.494 4.494 8 C 0.014 3.986 9 C -0.114 4.114 10 C 0.156 3.844 11 H 0.078 0.922 12 N -0.692 5.692 13 C 0.493 3.507 14 C -0.323 4.323 15 C 0.287 3.713 16 Cl -0.026 7.026 17 N -0.616 5.616 18 C 0.618 3.382 19 N -0.822 5.822 20 N -0.631 5.631 21 C -0.120 4.120 22 C -0.008 4.008 23 H 0.266 0.734 24 H 0.007 0.993 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.405 0.595 29 H 0.153 0.847 30 H 0.414 0.586 31 H 0.413 0.587 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.021 0.979 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.174 -11.036 3.962 16.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.513 4.513 8 C -0.024 4.024 9 C -0.152 4.152 10 C 0.053 3.947 11 H 0.096 0.904 12 N -0.320 5.320 13 C 0.244 3.756 14 C -0.355 4.355 15 C 0.117 3.883 16 Cl 0.002 6.998 17 N -0.347 5.347 18 C 0.257 3.743 19 N -0.372 5.372 20 N -0.367 5.367 21 C -0.159 4.159 22 C -0.047 4.047 23 H 0.076 0.924 24 H 0.026 0.974 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.241 0.759 29 H 0.171 0.829 30 H 0.245 0.755 31 H 0.244 0.756 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 11.306 -11.323 4.320 16.575 hybrid contribution 0.244 1.205 -0.042 1.230 sum 11.550 -10.118 4.279 15.940 Atomic orbital electron populations 1.69812 1.06176 1.27229 1.49274 1.24831 0.94720 0.98596 0.94307 0.86665 0.79439 0.82971 0.79067 1.19895 1.21811 1.19984 1.19992 0.89227 0.91486 1.50548 1.19336 0.98845 0.92669 0.91507 1.21942 0.91558 0.98991 1.02738 1.21290 0.95389 0.88576 0.89396 0.90435 1.45243 1.19788 1.45094 1.21911 1.18059 0.85743 0.84813 0.86944 1.21618 0.99134 1.12750 1.01997 1.21080 0.88798 0.90316 0.88058 1.98406 1.73953 1.95847 1.31557 1.67054 1.37649 1.27262 1.02781 1.18533 0.84192 0.86238 0.85310 1.41632 1.28544 1.48868 1.18115 1.67321 1.16666 1.18163 1.34509 1.22049 0.97168 0.95171 1.01541 1.19604 0.96722 0.94698 0.93633 0.92402 0.97436 0.91941 0.94271 0.92416 0.75938 0.82932 0.75545 0.75606 0.92472 0.94352 0.96062 0.95395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.50 12.73 55.43 0.71 -23.79 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 20.52 26.80 -169.99 -4.56 15.97 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.49 -12.16 5.51 -98.92 -0.55 -12.71 16 8 C 0.01 0.33 5.96 -27.48 -0.16 0.16 16 9 C -0.11 -2.15 5.40 -26.63 -0.14 -2.29 16 10 C 0.16 2.70 2.05 -67.97 -0.14 2.56 16 11 H 0.08 1.35 6.50 -51.93 -0.34 1.01 16 12 N -0.69 -10.67 5.23 -53.84 -0.28 -10.96 16 13 C 0.49 7.82 7.68 -154.83 -1.19 6.63 16 14 C -0.32 -5.02 8.68 -39.06 -0.34 -5.36 16 15 C 0.29 4.35 7.32 -17.18 -0.13 4.22 16 16 Cl -0.03 -0.34 29.15 -51.86 -1.51 -1.86 16 17 N -0.62 -9.31 10.45 -11.12 -0.12 -9.42 16 18 C 0.62 8.79 8.67 -322.90 -2.80 5.99 16 19 N -0.82 -7.93 9.07 29.75 0.27 -7.66 16 20 N -0.63 -9.68 10.49 -13.18 -0.14 -9.82 16 21 C -0.12 -2.26 5.46 -26.61 -0.15 -2.41 16 22 C -0.01 -0.18 5.60 -27.47 -0.15 -0.34 16 23 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 25 H 0.06 1.59 7.08 -51.93 -0.37 1.22 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.40 5.80 8.72 -40.82 -0.36 5.44 16 29 H 0.15 2.33 6.33 -52.49 -0.33 2.00 16 30 H 0.41 3.20 8.94 -40.82 -0.37 2.83 16 31 H 0.41 3.14 8.94 -40.82 -0.37 2.77 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.04 0.67 7.76 -51.93 -0.40 0.27 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.03 0.61 5.17 -51.93 -0.27 0.34 16 LS Contribution 301.51 15.07 4.54 4.54 Total: -1.00 -27.62 301.51 -10.97 -38.59 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.04 Total: 5.98 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -5.84 Total: -1.57 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.44 Total: -61.66 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.56 Total: 15.97 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.51 Total: -1.86 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.62 -10.97 -38.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050562.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.255 kcal (2) G-P(sol) polarization free energy of solvation -27.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds