Wall clock time and date at job start Tue Mar 31 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34637 * 117.00232 * 2 1 4 4 O 1.21516 * 120.00092 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00067 * 180.02562 * 3 2 1 6 6 N 1.40100 * 120.00112 * 359.97438 * 5 3 2 7 7 C 1.34773 * 119.99993 * 180.02562 * 6 5 3 8 8 O 1.21612 * 119.99954 * 359.97438 * 7 6 5 9 9 C 1.47430 * 119.99987 * 179.97438 * 7 6 5 10 10 C 1.41283 * 126.41544 * 0.04549 * 9 7 6 11 11 N 1.30450 * 108.02431 * 179.68178 * 10 9 7 12 12 N 1.39939 * 108.89458 * 0.43924 * 11 10 9 13 13 C 1.46491 * 125.75158 * 179.81322 * 12 11 10 14 14 C 1.50702 * 109.46957 * 269.69119 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.34263 * 108.48917 * 359.54930 * 12 11 10 23 23 C 1.50694 * 126.28514 * 180.26201 * 22 12 11 24 24 H 1.09007 * 109.46880 * 60.00166 * 1 2 3 25 25 H 1.08999 * 109.47233 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47164 * 300.00284 * 1 2 3 27 27 H 0.97009 * 119.99874 * 180.02562 * 5 3 2 28 28 H 0.96999 * 119.99571 * 0.02562 * 6 5 3 29 29 H 1.08004 * 125.98627 * 359.95855 * 10 9 7 30 30 H 1.09004 * 109.47166 * 149.69385 * 13 12 11 31 31 H 1.08994 * 109.47507 * 29.69092 * 13 12 11 32 32 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 33 33 H 1.09004 * 109.47316 * 90.00399 * 23 22 12 34 34 H 1.09005 * 109.47060 * 210.00231 * 23 22 12 35 35 H 1.08998 * 109.47841 * 329.99761 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2701 -0.0005 6 7 4.1722 0.0951 -0.0005 7 6 5.5181 0.1656 -0.0005 8 8 6.0702 1.2492 -0.0010 9 6 6.3210 -1.0708 0.0000 10 6 5.8243 -2.3934 -0.0003 11 7 6.8436 -3.2075 -0.0065 12 7 8.0239 -2.4557 -0.0002 13 6 9.3845 -2.9986 -0.0002 14 6 9.8510 -3.1850 1.4206 15 1 9.1990 -2.9255 2.2415 16 6 11.1079 -3.6929 1.6725 17 7 11.9017 -4.0093 0.6729 18 14 11.6832 -3.9311 3.4336 19 1 11.3121 -5.2927 3.8957 20 1 13.1582 -3.7713 3.4985 21 1 11.0368 -2.9188 4.3069 22 6 7.6990 -1.1530 0.0001 23 6 8.6618 0.0063 0.0003 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.8496 2.1345 -0.0001 28 1 3.7318 -0.7691 -0.0005 29 1 4.7830 -2.6803 -0.0004 30 1 10.0519 -2.3065 -0.5139 31 1 9.3922 -3.9597 -0.5142 32 1 12.7861 -4.3662 0.8501 33 1 8.8940 0.2861 -1.0273 34 1 8.2092 0.8543 0.5144 35 1 9.5786 -0.2828 0.5142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160416813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:23 Heat of formation + Delta-G solvation = -14.376356 kcal Electronic energy + Delta-G solvation = -21431.702988 eV Core-core repulsion = 17854.038935 eV Total energy + Delta-G solvation = -3577.664053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.06298 -40.69851 -39.02138 -36.79530 -35.80106 -33.99502 -32.29641 -31.63420 -30.74392 -27.94243 -27.26975 -26.69228 -23.61323 -22.52495 -22.38648 -20.43548 -19.63561 -18.70676 -17.82661 -16.92382 -16.88727 -16.66665 -16.38328 -15.17704 -15.11528 -14.57083 -14.47917 -14.27709 -14.16659 -13.67043 -13.35578 -12.70050 -12.56438 -12.44435 -12.15676 -11.88609 -11.58928 -11.52833 -11.17390 -11.14645 -11.13745 -10.93963 -10.44382 -10.32772 -10.00584 -9.74120 -8.75904 -8.71170 -8.61218 -8.04339 -6.38627 -4.47017 1.51744 1.93511 2.42314 2.51770 2.67156 3.15582 3.21307 3.22727 3.31395 3.68733 4.20328 4.58709 4.81941 4.90627 4.92091 4.98819 5.11132 5.21877 5.35336 5.63882 5.74883 5.85819 6.01273 6.20808 6.41623 6.48573 6.67998 6.82269 6.84413 7.04074 7.37123 7.49162 7.68094 7.71230 7.85289 8.24678 8.39647 8.58518 9.20489 10.69549 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.032300 B = 0.003294 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.674495 B = 8497.675071 C = 8705.280983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.372 6.372 3 C 0.655 3.345 4 O -0.563 6.563 5 N -0.488 5.488 6 N -0.530 5.530 7 C 0.610 3.390 8 O -0.550 6.550 9 C -0.328 4.328 10 C 0.060 3.940 11 N -0.291 5.291 12 N -0.311 5.311 13 C 0.250 3.750 14 C -0.543 4.543 15 H 0.066 0.934 16 C 0.068 3.932 17 N -0.889 5.889 18 Si 0.909 3.091 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.271 1.271 22 C 0.175 3.825 23 C -0.101 4.101 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.065 0.935 27 H 0.453 0.547 28 H 0.430 0.570 29 H 0.179 0.821 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.270 0.730 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.188 5.851 -2.307 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.286 6.286 3 C 0.407 3.593 4 O -0.449 6.449 5 N -0.247 5.247 6 N -0.283 5.283 7 C 0.401 3.599 8 O -0.427 6.427 9 C -0.345 4.345 10 C -0.128 4.128 11 N -0.110 5.110 12 N -0.087 5.087 13 C 0.133 3.867 14 C -0.581 4.581 15 H 0.084 0.916 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.735 3.265 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.195 1.195 22 C 0.037 3.963 23 C -0.159 4.159 24 H 0.084 0.916 25 H 0.124 0.876 26 H 0.084 0.916 27 H 0.301 0.699 28 H 0.272 0.728 29 H 0.196 0.804 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.475 5.352 -2.370 16.545 hybrid contribution -0.121 0.442 0.919 1.027 sum -15.595 5.794 -1.451 16.700 Atomic orbital electron populations 1.23265 0.73622 1.03890 1.02937 1.86188 1.24848 1.30550 1.86967 1.17768 0.81786 0.82794 0.76917 1.91103 1.61927 1.35025 1.56879 1.43716 0.99602 1.03365 1.78017 1.44833 1.03770 1.00373 1.79317 1.17424 0.78811 0.88950 0.74717 1.90738 1.70617 1.29428 1.51959 1.19239 0.92153 0.92163 1.30988 1.23782 0.98770 0.90168 1.00036 1.77182 0.90352 1.20375 1.23113 1.49429 1.08130 1.02705 1.48465 1.19904 0.70667 0.96544 0.99563 1.21250 1.00605 1.45338 0.90939 0.91561 1.24927 0.95966 0.94362 0.98354 1.69912 1.09266 1.42234 1.31172 0.86311 0.77858 0.78938 0.83366 1.20225 1.20775 1.19547 1.21442 0.93705 0.87609 0.93517 1.20660 0.97703 0.93996 1.03508 0.91620 0.87573 0.91605 0.69891 0.72835 0.80433 0.92401 0.92337 0.92040 0.90233 0.88530 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.56 101.05 1.07 1.44 16 2 O -0.37 -3.59 9.64 -40.32 -0.39 -3.97 16 3 C 0.66 7.79 8.81 54.06 0.48 8.27 16 4 O -0.56 -8.05 16.97 -19.28 -0.33 -8.37 16 5 N -0.49 -5.74 6.26 27.60 0.17 -5.57 16 6 N -0.53 -6.30 6.26 30.43 0.19 -6.11 16 7 C 0.61 9.21 7.93 -12.52 -0.10 9.11 16 8 O -0.55 -9.47 14.68 5.27 0.08 -9.39 16 9 C -0.33 -5.47 6.13 -105.07 -0.64 -6.12 16 10 C 0.06 0.95 11.50 -16.98 -0.20 0.75 16 11 N -0.29 -5.84 12.50 30.86 0.39 -5.46 16 12 N -0.31 -6.62 3.56 -57.78 -0.21 -6.82 16 13 C 0.25 5.95 5.78 -5.20 -0.03 5.92 16 14 C -0.54 -14.11 9.39 -34.44 -0.32 -14.43 16 15 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 16 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -23.95 13.29 55.43 0.74 -23.21 16 18 Si 0.91 20.28 29.54 -169.99 -5.02 15.26 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 C 0.18 3.32 7.01 -81.60 -0.57 2.75 16 23 C -0.10 -1.69 9.34 36.00 0.34 -1.35 16 24 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 25 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.45 5.30 8.10 -182.59 -1.48 3.83 16 28 H 0.43 4.15 6.91 -182.60 -1.26 2.89 16 29 H 0.18 1.91 7.50 -52.48 -0.39 1.51 16 30 H 0.06 1.36 7.62 -51.93 -0.40 0.97 16 31 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.10 1.58 6.50 -51.93 -0.34 1.24 16 35 H 0.08 1.50 7.70 -51.93 -0.40 1.10 16 LS Contribution 317.07 15.07 4.78 4.78 Total: -1.00 -31.20 317.07 -5.61 -36.80 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.93 Total: 4.05 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -0.08 Total: 8.02 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 1.28 Total: -47.17 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.64 Total: -21.74 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.20 -5.61 -36.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160416813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.427 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds