Wall clock time and date at job start Tue Mar 31 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34637 * 117.00232 * 2 1 4 4 O 1.21516 * 120.00092 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00067 * 180.02562 * 3 2 1 6 6 N 1.40100 * 120.00112 * 359.97438 * 5 3 2 7 7 C 1.34773 * 119.99993 * 180.02562 * 6 5 3 8 8 O 1.21612 * 119.99954 * 359.97438 * 7 6 5 9 9 C 1.47430 * 119.99987 * 179.97438 * 7 6 5 10 10 C 1.41283 * 126.41544 * 0.04549 * 9 7 6 11 11 N 1.30450 * 108.02431 * 179.68178 * 10 9 7 12 12 N 1.39939 * 108.89458 * 0.43924 * 11 10 9 13 13 C 1.46491 * 125.75158 * 179.81322 * 12 11 10 14 14 C 1.50702 * 109.46957 * 269.69119 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.34263 * 108.48917 * 359.54930 * 12 11 10 23 23 C 1.50694 * 126.28514 * 180.26201 * 22 12 11 24 24 H 1.09007 * 109.46880 * 60.00166 * 1 2 3 25 25 H 1.08999 * 109.47233 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47164 * 300.00284 * 1 2 3 27 27 H 0.97009 * 119.99874 * 180.02562 * 5 3 2 28 28 H 0.96999 * 119.99571 * 0.02562 * 6 5 3 29 29 H 1.08004 * 125.98627 * 359.95855 * 10 9 7 30 30 H 1.09004 * 109.47166 * 149.69385 * 13 12 11 31 31 H 1.08994 * 109.47507 * 29.69092 * 13 12 11 32 32 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 33 33 H 1.09004 * 109.47316 * 90.00399 * 23 22 12 34 34 H 1.09005 * 109.47060 * 210.00231 * 23 22 12 35 35 H 1.08998 * 109.47841 * 329.99761 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4092 1.2701 -0.0005 6 7 4.1722 0.0951 -0.0005 7 6 5.5181 0.1656 -0.0005 8 8 6.0702 1.2492 -0.0010 9 6 6.3210 -1.0708 0.0000 10 6 5.8243 -2.3934 -0.0003 11 7 6.8436 -3.2075 -0.0065 12 7 8.0239 -2.4557 -0.0002 13 6 9.3845 -2.9986 -0.0002 14 6 9.8510 -3.1850 1.4206 15 1 9.1990 -2.9255 2.2415 16 6 11.1079 -3.6929 1.6725 17 7 11.9017 -4.0093 0.6729 18 14 11.6832 -3.9311 3.4336 19 1 11.3121 -5.2927 3.8957 20 1 13.1582 -3.7713 3.4985 21 1 11.0368 -2.9188 4.3069 22 6 7.6990 -1.1530 0.0001 23 6 8.6618 0.0063 0.0003 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 3.8496 2.1345 -0.0001 28 1 3.7318 -0.7691 -0.0005 29 1 4.7830 -2.6803 -0.0004 30 1 10.0519 -2.3065 -0.5139 31 1 9.3922 -3.9597 -0.5142 32 1 12.7861 -4.3662 0.8501 33 1 8.8940 0.2861 -1.0273 34 1 8.2092 0.8543 0.5144 35 1 9.5786 -0.2828 0.5142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160416813.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:22 Heat of formation + Delta-G solvation = -37.930447 kcal Electronic energy + Delta-G solvation = -21432.724370 eV Core-core repulsion = 17854.038935 eV Total energy + Delta-G solvation = -3578.685435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.39082 -41.69856 -40.19956 -37.65520 -36.89856 -35.80596 -33.92975 -32.95555 -32.06141 -29.11132 -28.44987 -28.04243 -25.39305 -23.80695 -23.29066 -21.75925 -20.81389 -19.91096 -19.01534 -18.78345 -17.83826 -17.76077 -17.35639 -16.76602 -16.45540 -16.11182 -15.67997 -15.55176 -15.12053 -14.79588 -14.56482 -14.28311 -14.07117 -13.62861 -13.57269 -13.09264 -13.02551 -12.95947 -12.70355 -12.60427 -12.29692 -12.10329 -11.86259 -11.84270 -11.76323 -11.06075 -10.74664 -10.26511 -9.79137 -9.35145 -8.36551 -6.52564 0.53855 0.58925 1.26578 1.39208 1.40713 1.50180 1.52532 1.59489 1.84148 2.34109 2.42778 2.96169 3.47583 3.73385 3.89045 4.07329 4.21415 4.36042 4.41840 4.51520 4.69767 4.75134 4.81552 4.90391 5.01705 5.13131 5.16509 5.33367 5.51003 5.66400 5.76475 5.80897 6.02935 6.35681 6.56675 6.83038 6.87410 7.18788 7.31097 8.71298 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.032300 B = 0.003294 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.674495 B = 8497.675071 C = 8705.280983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.369 6.369 3 C 0.660 3.340 4 O -0.588 6.588 5 N -0.487 5.487 6 N -0.510 5.510 7 C 0.615 3.385 8 O -0.571 6.571 9 C -0.323 4.323 10 C 0.084 3.916 11 N -0.333 5.333 12 N -0.336 5.336 13 C 0.267 3.733 14 C -0.556 4.556 15 H 0.054 0.946 16 C 0.025 3.975 17 N -0.917 5.917 18 Si 0.970 3.030 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.269 1.269 22 C 0.157 3.843 23 C -0.094 4.094 24 H 0.065 0.935 25 H 0.140 0.860 26 H 0.065 0.935 27 H 0.452 0.548 28 H 0.443 0.557 29 H 0.232 0.768 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.274 0.726 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.991 5.901 -1.715 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.282 6.282 3 C 0.412 3.588 4 O -0.476 6.476 5 N -0.246 5.246 6 N -0.263 5.263 7 C 0.406 3.594 8 O -0.450 6.450 9 C -0.340 4.340 10 C -0.104 4.104 11 N -0.152 5.152 12 N -0.113 5.113 13 C 0.148 3.852 14 C -0.594 4.594 15 H 0.072 0.928 16 C -0.177 4.177 17 N -0.555 5.555 18 Si 0.794 3.206 19 H -0.199 1.199 20 H -0.198 1.198 21 H -0.193 1.193 22 C 0.020 3.980 23 C -0.152 4.152 24 H 0.084 0.916 25 H 0.158 0.842 26 H 0.083 0.917 27 H 0.301 0.699 28 H 0.287 0.713 29 H 0.248 0.752 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.327 5.383 -1.784 18.231 hybrid contribution 0.250 0.463 0.691 0.869 sum -17.077 5.846 -1.093 18.083 Atomic orbital electron populations 1.23624 0.71774 1.06159 1.02972 1.86206 1.26569 1.28995 1.86441 1.17794 0.81552 0.83129 0.76276 1.91091 1.62356 1.36188 1.57988 1.43748 0.99689 1.03150 1.78022 1.44491 1.02886 1.01139 1.77794 1.17093 0.79622 0.87924 0.74805 1.90737 1.71364 1.29944 1.53001 1.19396 0.91485 0.93276 1.29842 1.24602 1.00127 0.89074 0.96569 1.77142 0.90789 1.21817 1.25455 1.49124 1.07630 1.03569 1.50965 1.19390 0.72459 0.95235 0.98112 1.21419 1.00792 1.45505 0.91661 0.92788 1.25706 0.95984 0.93909 1.02099 1.69993 1.09669 1.42798 1.33004 0.85368 0.77698 0.78773 0.78769 1.19894 1.19834 1.19333 1.21913 0.95305 0.87153 0.93596 1.20645 0.96756 0.93476 1.04340 0.91594 0.84197 0.91668 0.69950 0.71259 0.75230 0.92979 0.94878 0.91692 0.88733 0.88018 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.49 10.56 113.37 1.20 1.69 16 2 O -0.37 -6.03 9.64 -55.47 -0.53 -6.57 16 3 C 0.66 14.28 8.81 129.79 1.14 15.42 16 4 O -0.59 -15.94 16.97 19.79 0.34 -15.61 16 5 N -0.49 -10.40 6.26 -297.01 -1.86 -12.26 16 6 N -0.51 -10.66 6.26 -175.88 -1.10 -11.76 16 7 C 0.62 17.26 7.93 86.67 0.69 17.95 16 8 O -0.57 -18.79 14.68 -4.07 -0.06 -18.85 16 9 C -0.32 -10.21 6.13 -20.15 -0.12 -10.33 16 10 C 0.08 2.44 11.50 85.65 0.99 3.42 16 11 N -0.33 -13.18 12.50 -56.28 -0.70 -13.88 16 12 N -0.34 -14.51 3.56 -336.72 -1.20 -15.71 16 13 C 0.27 13.14 5.78 85.64 0.50 13.64 16 14 C -0.56 -29.51 9.39 25.60 0.24 -29.27 16 15 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 16 C 0.02 1.29 5.46 84.66 0.46 1.75 16 17 N -0.92 -50.11 13.29 21.45 0.28 -49.83 16 18 Si 0.97 41.58 29.54 68.60 2.03 43.61 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 C 0.16 5.91 7.01 42.14 0.30 6.20 16 23 C -0.09 -3.16 9.34 71.23 0.67 -2.50 16 24 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.45 9.88 8.10 -213.31 -1.73 8.15 16 28 H 0.44 6.84 6.91 -213.32 -1.47 5.37 16 29 H 0.23 3.87 7.50 -2.91 -0.02 3.85 16 30 H 0.05 2.57 7.62 -2.38 -0.02 2.55 16 31 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.27 14.03 8.31 -92.70 -0.77 13.26 16 33 H 0.09 2.83 8.14 -2.38 -0.02 2.81 16 34 H 0.10 3.29 6.50 -2.38 -0.02 3.27 16 35 H 0.07 2.57 7.70 -2.39 -0.02 2.55 16 Total: -1.00 -67.82 317.07 1.19 -66.63 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -2.05 Total: 16.26 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 6.05 Total: 17.96 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -4.58 Total: -103.44 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.26 Total: -41.02 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -67.82 1.19 -66.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160416813.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.700 kcal (2) G-P(sol) polarization free energy of solvation -67.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds