Wall clock time and date at job start Tue Mar 31 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.45732 * 2 1 4 4 N 1.48563 * 110.41287 * 122.40546 * 2 1 3 5 5 C 1.48562 * 104.22050 * 158.26561 * 4 2 1 6 6 C 1.54373 * 104.59404 * 320.51832 * 5 4 2 7 7 C 1.54259 * 105.06207 * 23.85345 * 6 5 4 8 8 H 1.09010 * 110.32285 * 118.99556 * 7 6 5 9 9 N 1.46502 * 110.32678 * 241.09938 * 7 6 5 10 10 C 1.38532 * 120.00422 * 273.55018 * 9 7 6 11 11 C 1.40044 * 120.44868 * 359.97438 * 10 9 7 12 12 C 1.38800 * 118.59738 * 180.02562 * 11 10 9 13 13 Cl 1.73595 * 120.34143 * 180.02562 * 12 11 10 14 14 N 1.32209 * 119.31959 * 359.97438 * 12 11 10 15 15 C 1.33420 * 120.86452 * 0.02562 * 14 12 11 16 16 C 1.41575 * 119.23989 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99760 * 179.97438 * 16 15 14 18 18 C 1.40055 * 119.99999 * 0.27932 * 16 15 14 19 19 N 1.30694 * 119.99791 * 359.71976 * 18 16 15 20 20 Si 1.86801 * 120.00049 * 179.72049 * 18 16 15 21 21 H 1.48496 * 109.46852 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.46780 * 120.00042 * 20 18 16 23 23 H 1.48503 * 109.46797 * 239.99850 * 20 18 16 24 24 N 1.32564 * 120.45207 * 180.29318 * 10 9 7 25 25 H 1.08998 * 109.46608 * 182.41704 * 1 2 3 26 26 H 1.09000 * 109.47499 * 302.41506 * 1 2 3 27 27 H 1.09007 * 109.47183 * 62.42233 * 1 2 3 28 28 H 1.00897 * 110.99619 * 38.70607 * 4 2 1 29 29 H 1.08995 * 110.41093 * 201.73839 * 5 4 2 30 30 H 1.09000 * 110.50934 * 79.34854 * 5 4 2 31 31 H 1.08996 * 110.32597 * 264.95873 * 6 5 4 32 32 H 1.09001 * 110.41081 * 142.79652 * 6 5 4 33 33 H 0.97002 * 119.99618 * 93.54535 * 9 7 6 34 34 H 1.08004 * 120.70553 * 0.02562 * 11 10 9 35 35 H 0.96995 * 119.99819 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 7 2.0482 -0.7462 1.1755 5 6 3.4292 -1.1297 0.7846 6 6 3.3178 -1.5188 -0.7052 7 6 2.0685 -0.7756 -1.2213 8 1 2.3414 -0.0854 -2.0197 9 7 1.0674 -1.7332 -1.6978 10 6 1.1187 -2.1978 -3.0019 11 6 2.1231 -1.7579 -3.8730 12 6 2.1378 -2.2479 -5.1715 13 17 3.3627 -1.7336 -6.2890 14 7 1.2100 -3.1110 -5.5483 15 6 0.2640 -3.5138 -4.6980 16 6 -0.7131 -4.4388 -5.1382 17 1 -1.4842 -4.7734 -4.4600 18 6 -0.6761 -4.9250 -6.4511 19 7 0.2573 -4.5204 -7.2716 20 14 -1.9608 -6.1515 -7.0296 21 1 -2.8995 -6.4466 -5.9174 22 1 -2.7132 -5.5775 -8.1740 23 1 -1.2905 -7.4058 -7.4570 24 7 0.2139 -3.0599 -3.4440 25 1 -0.3632 -1.0268 0.0433 26 1 -0.3634 0.5509 0.8675 27 1 -0.3634 0.4758 -0.9110 28 1 1.4853 -1.5625 1.3624 29 1 3.7691 -1.9802 1.3753 30 1 4.1089 -0.2865 0.9075 31 1 3.1862 -2.5960 -0.8063 32 1 4.2040 -1.1935 -1.2502 33 1 0.3686 -2.0420 -1.1000 34 1 2.8706 -1.0523 -3.5414 35 1 0.2832 -4.8574 -8.1808 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162666480.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:22 Heat of formation + Delta-G solvation = 48.848071 kcal Electronic energy + Delta-G solvation = -19831.236781 eV Core-core repulsion = 16697.023509 eV Total energy + Delta-G solvation = -3134.213272 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.71682 -38.60422 -35.63665 -34.77929 -33.34032 -31.50570 -31.25764 -29.71388 -27.97181 -26.42507 -25.34867 -22.16628 -21.97337 -21.51638 -19.68721 -18.13058 -16.63077 -16.40133 -15.87349 -15.22070 -14.67002 -14.52854 -14.42350 -13.88083 -13.58585 -13.37588 -12.98554 -12.74986 -12.49867 -12.18173 -11.67016 -11.44823 -11.41889 -11.20006 -11.13412 -10.86154 -10.82392 -10.80871 -10.37624 -10.21010 -10.00906 -9.16722 -9.04879 -8.80556 -8.29138 -7.51311 -7.18793 -6.59424 -4.82690 2.49784 2.94198 2.95474 3.04285 3.10067 3.10532 3.75479 3.88516 4.08033 4.58252 4.80086 4.84733 4.89485 5.18612 5.30570 5.38498 5.60382 5.68966 5.81991 5.85754 5.93105 5.97912 6.08118 6.12611 6.17604 6.35877 6.40411 6.62683 6.80813 6.91688 7.11237 7.20109 7.69218 8.08851 8.16501 8.50198 8.57015 9.02767 10.06422 10.21205 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019557 B = 0.005049 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.380470 B = 5544.202731 C = 6596.236791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 H 0.097 0.903 4 N -0.665 5.665 5 C 0.040 3.960 6 C -0.173 4.173 7 C 0.130 3.870 8 H 0.088 0.912 9 N -0.721 5.721 10 C 0.456 3.544 11 C -0.404 4.404 12 C 0.269 3.731 13 Cl -0.083 7.083 14 N -0.528 5.528 15 C 0.434 3.566 16 C -0.394 4.394 17 H 0.096 0.904 18 C 0.065 3.935 19 N -0.701 5.701 20 Si 0.919 3.081 21 H -0.258 1.258 22 H -0.271 1.271 23 H -0.271 1.271 24 N -0.642 5.642 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.336 0.664 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.396 0.604 34 H 0.110 0.890 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.189 5.526 9.372 11.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.050 4.050 3 H 0.115 0.885 4 N -0.293 5.293 5 C -0.089 4.089 6 C -0.213 4.213 7 C 0.021 3.979 8 H 0.106 0.894 9 N -0.359 5.359 10 C 0.209 3.791 11 C -0.437 4.437 12 C 0.088 3.912 13 Cl -0.055 7.055 14 N -0.249 5.249 15 C 0.198 3.802 16 C -0.429 4.429 17 H 0.114 0.886 18 C -0.163 4.163 19 N -0.322 5.322 20 Si 0.742 3.258 21 H -0.181 1.181 22 H -0.196 1.196 23 H -0.197 1.197 24 N -0.372 5.372 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.152 0.848 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.233 0.767 34 H 0.128 0.872 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.932 5.542 9.141 11.085 hybrid contribution 0.096 -0.689 -0.762 1.031 sum 3.029 4.853 8.380 10.146 Atomic orbital electron populations 1.21798 0.93876 1.02257 1.02531 1.22887 0.95734 0.98600 0.87787 0.88472 1.63470 1.03503 1.26034 1.36264 1.22971 0.91634 1.00387 0.93956 1.23460 0.98947 1.01957 0.96986 1.22141 0.87980 0.90728 0.97004 0.89433 1.44296 1.32950 1.48837 1.09826 1.18150 0.88584 0.87933 0.84479 1.20921 1.09332 1.18144 0.95329 1.21452 0.90364 0.92842 0.86580 1.98294 1.53226 1.89008 1.64991 1.68594 1.04973 1.15267 1.36048 1.19478 0.89223 0.89986 0.81488 1.19392 1.08863 1.18503 0.96182 0.88604 1.26133 0.96523 0.97072 0.96555 1.70158 1.25910 1.31161 1.04996 0.86081 0.80474 0.79725 0.79494 1.18134 1.19632 1.19655 1.68231 1.29482 1.20385 1.19062 0.92322 0.91921 0.91334 0.84778 0.90997 0.90358 0.90679 0.90714 0.76683 0.87207 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.64 37.16 0.32 -1.26 16 2 C 0.06 0.67 3.82 -66.07 -0.25 0.42 16 3 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 4 N -0.67 -7.07 7.42 -102.75 -0.76 -7.83 16 5 C 0.04 0.41 7.47 -2.18 -0.02 0.40 16 6 C -0.17 -2.15 6.79 -25.35 -0.17 -2.32 16 7 C 0.13 1.75 2.89 -66.55 -0.19 1.56 16 8 H 0.09 1.26 6.59 -51.92 -0.34 0.92 16 9 N -0.72 -12.12 4.60 -52.43 -0.24 -12.36 16 10 C 0.46 10.12 7.71 -154.99 -1.19 8.92 16 11 C -0.40 -9.03 9.12 -38.70 -0.35 -9.38 16 12 C 0.27 6.64 7.33 -17.18 -0.13 6.52 16 13 Cl -0.08 -1.76 29.15 -51.86 -1.51 -3.28 16 14 N -0.53 -14.65 7.86 -9.84 -0.08 -14.72 16 15 C 0.43 12.09 7.37 -158.34 -1.17 10.93 16 16 C -0.39 -10.57 9.37 -37.63 -0.35 -10.93 16 17 H 0.10 2.46 7.85 -52.49 -0.41 2.05 16 18 C 0.07 1.62 5.50 -17.35 -0.10 1.53 16 19 N -0.70 -18.38 11.42 55.55 0.63 -17.75 16 20 Si 0.92 18.22 29.56 -169.99 -5.02 13.20 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 24 N -0.64 -16.46 10.39 -11.89 -0.12 -16.58 16 25 H 0.06 0.65 6.18 -51.93 -0.32 0.33 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.34 3.49 8.61 -39.29 -0.34 3.15 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.10 7.95 -51.93 -0.41 0.68 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.40 6.33 6.50 -40.82 -0.27 6.06 16 34 H 0.11 2.17 6.38 -52.48 -0.34 1.84 16 35 H 0.28 6.52 8.29 -40.82 -0.34 6.19 16 LS Contribution 304.93 15.07 4.60 4.60 Total: -1.00 -29.10 304.93 -10.21 -39.31 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -4.10 Total: 9.04 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -3.60 Total: 6.38 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -0.57 Total: -69.25 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.20 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -1.51 Total: -3.28 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.10 -10.21 -39.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162666480.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.158 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds