Wall clock time and date at job start Tue Mar 31 2020 05:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34789 * 116.99487 * 2 1 4 4 O 1.21538 * 120.00146 * 359.97438 * 3 2 1 5 5 C 1.47156 * 119.99338 * 180.02562 * 3 2 1 6 6 C 1.40257 * 120.50784 * 359.97438 * 5 3 2 7 7 C 1.38685 * 118.32923 * 180.02562 * 6 5 3 8 8 N 1.39560 * 120.37469 * 179.97438 * 7 6 5 9 9 C 1.36790 * 120.00158 * 0.02562 * 8 7 6 10 10 H 1.07994 * 119.99840 * 359.97438 * 9 8 7 11 11 C 1.38744 * 120.00048 * 180.02562 * 9 8 7 12 12 N 1.31639 * 119.99900 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00170 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.46991 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.46972 * 119.99663 * 13 11 9 16 16 H 1.48497 * 109.47432 * 239.99489 * 13 11 9 17 17 C 1.40005 * 119.24534 * 359.97438 * 7 6 5 18 18 O 1.35495 * 119.52162 * 180.02562 * 17 7 6 19 19 C 1.42902 * 117.00109 * 179.97438 * 18 17 7 20 20 N 1.32232 * 120.95461 * 0.02562 * 17 7 6 21 21 C 1.32224 * 121.83360 * 359.97438 * 20 17 7 22 22 O 1.35450 * 119.67689 * 180.02562 * 21 20 17 23 23 C 1.42903 * 116.99900 * 0.02562 * 22 21 20 24 24 H 1.08994 * 109.47571 * 60.00463 * 1 2 3 25 25 H 1.09010 * 109.47158 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47214 * 299.99926 * 1 2 3 27 27 H 1.08004 * 120.83748 * 0.27393 * 6 5 3 28 28 H 0.97001 * 119.99359 * 179.97438 * 8 7 6 29 29 H 0.96997 * 120.00467 * 180.02562 * 12 11 9 30 30 H 1.09000 * 109.46810 * 60.00303 * 19 18 17 31 31 H 1.08997 * 109.46829 * 179.97438 * 19 18 17 32 32 H 1.08995 * 109.47291 * 300.00609 * 19 18 17 33 33 H 1.09001 * 109.47293 * 179.97438 * 23 22 21 34 34 H 1.09000 * 109.46954 * 299.99714 * 23 22 21 35 35 H 1.08997 * 109.46924 * 60.00261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2010 0.0000 4 8 1.4018 2.2203 -0.0005 5 6 3.5334 1.2780 -0.0006 6 6 4.3076 0.1085 -0.0006 7 6 5.6888 0.2337 -0.0006 8 7 6.5003 -0.9018 0.0000 9 6 5.9342 -2.1471 0.0000 10 1 4.8593 -2.2515 0.0000 11 6 6.7409 -3.2758 0.0010 12 7 8.0511 -3.1484 0.0015 13 14 5.9679 -4.9763 0.0017 14 1 4.4885 -4.8476 0.0004 15 1 6.4008 -5.7174 -1.2102 16 1 6.3998 -5.7160 1.2148 17 6 6.2598 1.5120 -0.0011 18 8 7.6086 1.6408 -0.0017 19 6 8.1334 2.9699 -0.0028 20 7 5.5018 2.5955 -0.0011 21 6 4.1815 2.5230 -0.0011 22 8 3.4474 3.6612 -0.0016 23 6 4.1658 4.8966 -0.0028 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3634 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.8400 -0.8650 -0.0046 28 1 7.4657 -0.8078 -0.0004 29 1 8.6152 -3.9375 0.0019 30 1 7.7893 3.4971 0.8870 31 1 9.2227 2.9304 -0.0026 32 1 7.7886 3.4960 -0.8929 33 1 3.4601 5.7273 -0.0035 34 1 4.7929 4.9529 0.8870 35 1 4.7922 4.9517 -0.8930 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186497.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:33 Heat of formation + Delta-G solvation = -110.075813 kcal Electronic energy + Delta-G solvation = -22383.949339 eV Core-core repulsion = 18769.842694 eV Total energy + Delta-G solvation = -3614.106644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38808 -39.43411 -38.19125 -36.76561 -35.80659 -35.12427 -32.22252 -31.33627 -28.55801 -27.52086 -27.36920 -26.01167 -24.68039 -23.44439 -21.78866 -20.48943 -18.56467 -18.00457 -17.37328 -16.81380 -16.39145 -16.01636 -15.93318 -15.57978 -14.93157 -14.86059 -14.39363 -13.99518 -13.77643 -13.08100 -13.02797 -12.74290 -12.66547 -12.60769 -11.76301 -11.71196 -11.61775 -11.52907 -11.19644 -11.12635 -10.75975 -10.50124 -10.39521 -10.38889 -10.05721 -9.84896 -9.30475 -9.08399 -8.51421 -6.67996 -6.65832 -3.78774 1.34393 2.20362 3.07008 3.13283 3.16498 3.17547 3.23062 3.63978 3.79282 3.96528 4.44608 4.86045 5.03898 5.09575 5.34161 5.38054 5.40499 5.57043 5.61233 5.63552 5.67586 5.71331 5.85194 5.88067 5.95438 6.06092 6.38440 6.62990 6.81959 7.08688 7.18404 7.51257 7.59460 8.08457 8.32003 8.46316 8.62611 9.16438 9.39168 10.47344 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.006784 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.180967 B = 4126.568288 C = 6195.001826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.356 6.356 3 C 0.519 3.481 4 O -0.503 6.503 5 C -0.158 4.158 6 C -0.113 4.113 7 C 0.123 3.877 8 N -0.539 5.539 9 C -0.297 4.297 10 H 0.106 0.894 11 C 0.022 3.978 12 N -0.881 5.881 13 Si 0.934 3.066 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.280 3.720 18 O -0.306 6.306 19 C 0.048 3.952 20 N -0.551 5.551 21 C 0.276 3.724 22 O -0.288 6.288 23 C 0.045 3.955 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.058 0.942 27 H 0.152 0.848 28 H 0.409 0.591 29 H 0.277 0.723 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.314 7.081 -0.009 8.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.273 6.273 3 C 0.365 3.635 4 O -0.392 6.392 5 C -0.163 4.163 6 C -0.146 4.146 7 C 0.001 3.999 8 N -0.144 5.144 9 C -0.428 4.428 10 H 0.124 0.876 11 C -0.183 4.183 12 N -0.517 5.517 13 Si 0.760 3.240 14 H -0.188 1.188 15 H -0.205 1.205 16 H -0.205 1.205 17 C 0.092 3.908 18 O -0.213 6.213 19 C -0.048 4.048 20 N -0.288 5.288 21 C 0.098 3.902 22 O -0.195 6.195 23 C -0.052 4.052 24 H 0.077 0.923 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.170 0.830 28 H 0.245 0.755 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.049 7.592 -0.009 9.117 hybrid contribution -0.098 -1.064 0.000 1.069 sum -5.147 6.528 -0.008 8.312 Atomic orbital electron populations 1.23150 0.77210 1.03102 1.02071 1.86624 1.22512 1.33225 1.84906 1.20859 0.88824 0.81055 0.72809 1.90818 1.66553 1.35698 1.46155 1.18454 0.89100 0.91667 1.17058 1.20612 0.90264 0.97471 1.06211 1.17549 0.90987 0.85207 1.06173 1.40812 1.07754 1.01660 1.64153 1.19825 0.94075 0.81658 1.47197 0.87617 1.25347 0.95307 1.00535 0.97067 1.69725 1.03187 1.31640 1.47194 0.85724 0.79425 0.80791 0.78079 1.18843 1.20456 1.20450 1.18889 0.83043 0.87887 1.00993 1.86141 1.16517 1.30029 1.88584 1.22675 0.98058 0.82395 1.01683 1.66491 1.05925 1.31998 1.24349 1.18443 0.84925 0.85235 1.01641 1.86367 1.32433 1.11886 1.88833 1.22641 0.96978 0.84182 1.01349 0.92301 0.88510 0.92308 0.83006 0.75494 0.91325 0.92980 0.89352 0.92972 0.89717 0.93307 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.57 101.05 1.07 1.56 16 2 O -0.36 -6.18 9.88 -40.73 -0.40 -6.58 16 3 C 0.52 10.27 7.89 34.35 0.27 10.54 16 4 O -0.50 -10.58 14.96 -26.63 -0.40 -10.98 16 5 C -0.16 -3.28 5.90 -104.72 -0.62 -3.90 16 6 C -0.11 -2.39 8.95 -38.66 -0.35 -2.74 16 7 C 0.12 2.75 6.65 -83.51 -0.56 2.19 16 8 N -0.54 -12.91 5.43 -9.44 -0.05 -12.96 16 9 C -0.30 -7.28 9.56 -15.15 -0.14 -7.43 16 10 H 0.11 2.46 5.73 -52.49 -0.30 2.16 16 11 C 0.02 0.54 5.50 -17.45 -0.10 0.44 16 12 N -0.88 -22.71 13.05 55.49 0.72 -21.98 16 13 Si 0.93 19.00 29.55 -169.99 -5.02 13.98 16 14 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 15 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 17 C 0.28 5.86 7.52 -16.72 -0.13 5.74 16 18 O -0.31 -5.93 9.71 -18.18 -0.18 -6.11 16 19 C 0.05 0.69 10.37 101.05 1.05 1.74 16 20 N -0.55 -11.03 8.01 -12.83 -0.10 -11.13 16 21 C 0.28 5.70 7.51 -16.59 -0.12 5.58 16 22 O -0.29 -5.62 8.55 -39.94 -0.34 -5.96 16 23 C 0.04 0.66 10.38 101.05 1.05 1.71 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.15 3.14 5.69 -52.48 -0.30 2.84 16 28 H 0.41 10.15 7.25 -40.82 -0.30 9.85 16 29 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -28.82 311.34 -3.48 -32.30 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -3.83 Total: 9.30 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 1.42 Total: 15.44 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.57 Total: -46.08 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -1.32 Total: -29.63 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.82 -3.48 -32.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186497.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.775 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds