Wall clock time and date at job start Tue Mar 31 2020 05:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29514 * 1 3 3 Si 1.86799 * 120.00298 * 2 1 4 4 H 1.48505 * 109.46803 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47495 * 300.00746 * 3 2 1 6 6 H 1.48497 * 109.46717 * 60.01114 * 3 2 1 7 7 C 1.46522 * 119.99392 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00102 * 170.68727 * 7 2 1 9 9 C 1.40351 * 120.00196 * 350.68601 * 7 2 1 10 10 C 1.41335 * 120.25363 * 332.26067 * 9 7 2 11 11 C 1.36494 * 119.96373 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.50013 * 359.73147 * 11 10 9 13 13 N 1.48023 * 119.74202 * 180.29300 * 12 11 10 14 14 O 1.31698 * 119.99735 * 6.06433 * 13 12 11 15 15 O 1.31697 * 119.99761 * 186.06391 * 13 12 11 16 16 C 1.39493 * 120.51733 * 0.55107 * 12 11 10 17 17 N 1.39664 * 119.99014 * 179.71750 * 16 12 11 18 18 C 1.46502 * 120.00082 * 173.15835 * 17 16 12 19 19 C 1.52997 * 109.47708 * 180.27887 * 18 17 16 20 20 H 1.09001 * 109.46965 * 305.00551 * 19 18 17 21 21 O 1.42896 * 109.47134 * 64.99911 * 19 18 17 22 22 C 1.52997 * 109.47679 * 185.00153 * 19 18 17 23 23 O 1.42890 * 109.47349 * 174.99834 * 22 19 18 24 24 C 1.38172 * 120.01702 * 359.45222 * 16 12 11 25 25 H 0.97009 * 119.99481 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.02168 * 0.05424 * 10 9 7 27 27 H 1.08000 * 119.74818 * 180.02562 * 11 10 9 28 28 H 0.96998 * 120.00556 * 353.44068 * 17 16 12 29 29 H 1.09000 * 109.47136 * 300.28493 * 18 17 16 30 30 H 1.09002 * 109.47174 * 60.27837 * 18 17 16 31 31 H 0.96699 * 113.99890 * 60.00047 * 21 19 18 32 32 H 1.09005 * 109.47143 * 295.00296 * 22 19 18 33 33 H 1.09002 * 109.46743 * 54.99432 * 22 19 18 34 34 H 0.96708 * 114.00230 * 180.02562 * 23 22 19 35 35 H 1.07992 * 120.24471 * 180.25192 * 24 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2292 1.6177 0.0000 4 1 3.6892 1.3462 -0.0006 5 1 1.8704 2.3965 -1.2123 6 1 1.8707 2.3962 1.2126 7 6 2.0276 -1.2690 -0.0006 8 1 3.0970 -1.2752 -0.1519 9 6 1.3397 -2.4765 0.1956 10 6 0.1407 -2.4995 0.9436 11 6 -0.5233 -3.6773 1.1312 12 6 -0.0337 -4.8554 0.5880 13 7 -0.7708 -6.1220 0.7964 14 8 -1.9457 -6.1100 1.3914 15 8 -0.2517 -7.2610 0.3868 16 6 1.1508 -4.8572 -0.1488 17 7 1.6369 -6.0512 -0.6860 18 6 2.7952 -6.0329 -1.5829 19 6 3.1156 -7.4601 -2.0314 20 1 3.2542 -8.0938 -1.1555 21 8 2.0357 -7.9657 -2.8189 22 6 4.3976 -7.4567 -2.8664 23 8 4.7607 -8.8010 -3.1873 24 6 1.8403 -3.6772 -0.3519 25 1 -0.4850 0.8402 0.0004 26 1 -0.2502 -1.5858 1.3662 27 1 -1.4394 -3.6908 1.7030 28 1 1.2053 -6.8922 -0.4685 29 1 2.5694 -5.4198 -2.4554 30 1 3.6545 -5.6155 -1.0581 31 1 1.8553 -7.4496 -3.6165 32 1 4.2308 -6.8960 -3.7861 33 1 5.2009 -6.9894 -2.2967 34 1 5.5667 -8.8751 -3.7165 35 1 2.7555 -3.6737 -0.9251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163355563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:24 Heat of formation + Delta-G solvation = -68.890379 kcal Electronic energy + Delta-G solvation = -21845.859139 eV Core-core repulsion = 18233.538429 eV Total energy + Delta-G solvation = -3612.320710 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.12092 -38.19785 -36.78564 -36.11674 -35.02548 -33.88289 -32.79205 -30.93549 -30.41904 -28.14915 -26.88246 -25.12481 -23.56816 -22.08960 -20.98549 -20.61498 -18.24622 -17.60623 -17.12492 -16.78109 -16.57648 -16.21464 -15.90574 -15.37729 -14.73082 -14.54316 -14.14370 -13.90029 -13.49970 -13.21125 -12.96932 -12.83123 -12.60971 -12.46419 -11.99859 -11.70974 -11.46907 -11.16388 -10.89958 -10.70091 -10.32409 -10.12739 -10.05496 -10.00370 -9.80839 -9.52134 -9.48267 -9.28855 -8.28480 -7.65377 -6.87530 -5.19267 0.82362 2.35098 2.61646 2.69433 2.75531 2.83488 2.84752 3.30643 3.58061 3.87619 4.32628 4.41836 4.86844 4.96258 5.00097 5.07961 5.25558 5.37277 5.60639 5.75281 6.03180 6.05590 6.25919 6.33952 6.46069 6.54578 6.84670 7.09326 7.24644 7.33411 7.39195 7.50266 7.66605 7.69008 7.90930 8.04165 8.27945 8.32921 8.63444 9.19210 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.005142 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.369219 B = 5444.457517 C = 7235.673352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.061 3.939 3 Si 0.932 3.068 4 H -0.250 1.250 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.381 4.381 8 H 0.101 0.899 9 C 0.140 3.860 10 C -0.166 4.166 11 C -0.041 4.041 12 C -0.147 4.147 13 N 0.056 4.944 14 O -0.308 6.308 15 O -0.334 6.334 16 C 0.301 3.699 17 N -0.730 5.730 18 C 0.095 3.905 19 C 0.098 3.902 20 H 0.110 0.890 21 O -0.544 6.544 22 C 0.049 3.951 23 O -0.563 6.563 24 C -0.315 4.315 25 H 0.303 0.697 26 H 0.136 0.864 27 H 0.121 0.879 28 H 0.418 0.582 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.372 0.628 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.377 0.623 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.251 2.203 -5.682 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.337 5.337 2 C -0.170 4.170 3 Si 0.754 3.246 4 H -0.173 1.173 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.407 4.407 8 H 0.119 0.881 9 C 0.135 3.865 10 C -0.187 4.187 11 C -0.061 4.061 12 C -0.254 4.254 13 N 0.474 4.526 14 O -0.465 6.465 15 O -0.476 6.476 16 C 0.192 3.808 17 N -0.378 5.378 18 C -0.031 4.031 19 C 0.038 3.962 20 H 0.128 0.872 21 O -0.349 6.349 22 C -0.030 4.030 23 O -0.368 6.368 24 C -0.342 4.342 25 H 0.116 0.884 26 H 0.154 0.846 27 H 0.139 0.861 28 H 0.271 0.729 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.218 0.782 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.224 0.776 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.657 1.758 -4.996 11.014 hybrid contribution 0.440 0.744 -0.698 1.111 sum 10.098 2.502 -5.694 11.859 Atomic orbital electron populations 1.69096 1.09087 1.32223 1.23331 1.27849 0.94944 1.03029 0.91200 0.85828 0.81117 0.78073 0.79626 1.17291 1.18879 1.18644 1.21443 0.96245 0.89081 1.33899 0.88109 1.17668 0.90725 0.91990 0.86102 1.21228 0.97964 0.96180 1.03371 1.20042 0.98735 0.90091 0.97241 1.19618 0.99663 0.82478 1.23644 1.49957 1.01376 1.03198 0.98071 1.96110 1.05104 1.95849 1.49464 1.95699 1.71531 1.18093 1.62311 1.17268 0.88417 0.87137 0.87940 1.45970 1.32687 1.08987 1.50178 1.21810 0.90726 0.95905 0.94644 1.22104 0.84968 0.94689 0.94424 0.87220 1.86700 1.52406 1.56256 1.39500 1.22823 0.97408 0.84066 0.98729 1.86566 1.48057 1.26359 1.75822 1.20339 1.05890 0.90888 1.17120 0.88386 0.84644 0.86132 0.72923 0.91983 0.91397 0.78173 0.93020 0.92391 0.77617 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -14.13 10.84 55.98 0.61 -13.52 16 2 C 0.06 1.14 5.45 -15.19 -0.08 1.06 16 3 Si 0.93 13.65 29.65 -169.99 -5.04 8.61 16 4 H -0.25 -3.62 7.11 56.52 0.40 -3.22 16 5 H -0.26 -3.86 7.11 56.52 0.40 -3.45 16 6 H -0.26 -3.82 7.11 56.52 0.40 -3.42 16 7 C -0.38 -7.72 9.31 -35.45 -0.33 -8.05 16 8 H 0.10 1.88 7.95 -52.48 -0.42 1.46 16 9 C 0.14 3.08 5.60 -106.83 -0.60 2.49 16 10 C -0.17 -3.72 8.70 -39.03 -0.34 -4.06 16 11 C -0.04 -0.95 9.50 -40.05 -0.38 -1.33 16 12 C -0.15 -3.62 6.92 -79.32 -0.55 -4.17 16 13 N 0.06 1.49 4.98 34.27 0.17 1.66 16 14 O -0.31 -8.46 19.14 -31.57 -0.60 -9.07 16 15 O -0.33 -8.88 16.29 -31.57 -0.51 -9.39 16 16 C 0.30 6.73 6.63 -83.85 -0.56 6.18 16 17 N -0.73 -14.55 5.56 -58.68 -0.33 -14.88 16 18 C 0.10 1.40 4.60 -4.04 -0.02 1.38 16 19 C 0.10 1.33 3.28 -26.73 -0.09 1.24 16 20 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 21 O -0.54 -8.33 13.25 -40.09 -0.53 -8.86 16 22 C 0.05 0.49 6.68 37.16 0.25 0.73 16 23 O -0.56 -6.19 13.62 -40.09 -0.55 -6.74 16 24 C -0.32 -6.66 9.08 -38.51 -0.35 -7.01 16 25 H 0.30 5.17 8.27 -40.82 -0.34 4.83 16 26 H 0.14 2.97 6.12 -52.49 -0.32 2.65 16 27 H 0.12 2.70 7.56 -52.49 -0.40 2.30 16 28 H 0.42 9.15 4.67 -42.10 -0.20 8.95 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 31 H 0.37 4.28 9.05 45.56 0.41 4.69 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.38 2.17 9.12 45.56 0.42 2.59 16 35 H 0.11 2.13 6.72 -52.49 -0.35 1.78 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -30.43 310.14 -7.24 -37.66 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -2.08 Total: 21.39 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -3.04 Total: -11.54 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.45 Total: -26.74 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -2.20 Total: -34.06 kcal Atomic # 14 Polarization: 13.65 SS G_CDS: -5.04 Total: 8.61 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.43 -7.24 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163355563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.226 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds