Wall clock time and date at job start Tue Mar 31 2020 05:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48498 * 109.46995 * 270.00022 * 3 2 1 5 5 H 1.48499 * 109.46999 * 30.00074 * 3 2 1 6 6 H 1.48501 * 109.46809 * 149.99758 * 3 2 1 7 7 C 1.37872 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08012 * 119.99817 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00328 * 180.02562 * 7 2 1 10 10 N 1.46896 * 109.47422 * 180.02562 * 9 7 2 11 11 C 1.46955 * 111.00029 * 293.79786 * 10 9 7 12 12 C 1.53054 * 109.36799 * 176.81095 * 11 10 9 13 13 N 1.46957 * 109.36274 * 58.40081 * 12 11 10 14 14 C 1.39815 * 111.00043 * 176.81154 * 13 12 11 15 15 C 1.39161 * 120.87589 * 10.50713 * 14 13 12 16 16 N 1.32319 * 119.02773 * 179.76341 * 15 14 13 17 17 C 1.31783 * 120.92441 * 0.51938 * 16 15 14 18 18 N 1.31797 * 121.94166 * 359.73219 * 17 16 15 19 19 C 1.32375 * 120.87312 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 120.50530 * 180.02562 * 19 18 17 21 21 C 1.46961 * 110.88278 * 300.68320 * 13 12 11 22 22 C 1.46957 * 111.00049 * 169.99850 * 10 9 7 23 23 H 0.97001 * 120.00267 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47169 * 59.99883 * 9 7 2 25 25 H 1.09009 * 109.47061 * 299.99930 * 9 7 2 26 26 H 1.08999 * 109.49138 * 296.78336 * 11 10 9 27 27 H 1.08999 * 109.48853 * 56.84551 * 11 10 9 28 28 H 1.09004 * 109.48871 * 298.44007 * 12 11 10 29 29 H 1.08997 * 109.50841 * 178.37994 * 12 11 10 30 30 H 1.08002 * 120.48467 * 359.97438 * 15 14 13 31 31 H 1.08001 * 119.02537 * 179.74614 * 17 16 15 32 32 H 1.09002 * 109.48516 * 299.35193 * 21 13 12 33 33 H 1.08999 * 109.49149 * 179.28621 * 21 13 12 34 34 H 1.08995 * 109.48950 * 303.15553 * 22 10 9 35 35 H 1.09002 * 109.48804 * 63.19991 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 4.0011 -2.5790 0.0010 11 6 3.6542 -3.2604 1.2560 12 6 4.1105 -4.7196 1.1843 13 7 5.5600 -4.7657 0.9466 14 6 6.0260 -6.0839 0.9465 15 6 5.1381 -7.1553 0.9354 16 7 5.6192 -8.3879 0.9310 17 6 6.9184 -8.6079 0.9472 18 7 7.7924 -7.6215 0.9631 19 6 7.3926 -6.3596 0.9629 20 17 8.5522 -5.0678 0.9833 21 6 5.9070 -4.0843 -0.3085 22 6 5.4506 -2.6252 -0.2367 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8752 -0.6805 -0.8889 26 1 4.1523 -2.7641 2.0889 27 1 2.5749 -3.2238 1.4034 28 1 3.5920 -5.2230 0.3683 29 1 3.8802 -5.2196 2.1250 30 1 4.0719 -6.9832 0.9271 31 1 7.2775 -9.6264 0.9471 32 1 5.4088 -4.5806 -1.1414 33 1 6.9863 -4.1209 -0.4558 34 1 5.6809 -2.1255 -1.1776 35 1 5.9691 -2.1214 0.5791 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056245.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:26 Heat of formation + Delta-G solvation = 70.271071 kcal Electronic energy + Delta-G solvation = -19863.413668 eV Core-core repulsion = 16730.129367 eV Total energy + Delta-G solvation = -3133.284301 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.52797 -39.08248 -37.04494 -35.78118 -33.85077 -32.64737 -30.97876 -30.81078 -28.24913 -25.65547 -25.21511 -23.31387 -22.96253 -21.28310 -19.64738 -18.28450 -17.89885 -17.08061 -16.76871 -15.59327 -15.03267 -14.87239 -14.63277 -14.41144 -14.05387 -13.99039 -13.78582 -13.34108 -12.71424 -12.43593 -12.27583 -11.99959 -11.71659 -11.35825 -11.03864 -11.01886 -10.89681 -10.78589 -10.59932 -10.22876 -10.18736 -9.90238 -9.58101 -9.35565 -8.63617 -8.33093 -7.53926 -6.12144 -4.10420 0.50680 0.61864 1.45285 3.23813 3.27400 3.31890 3.33203 3.46523 3.88754 3.92478 4.35928 4.38066 4.54048 4.58243 4.97994 5.12452 5.16544 5.22899 5.36583 5.46667 5.54037 5.68684 5.80409 5.90347 6.09778 6.25259 6.37812 6.43220 6.59530 6.78444 6.84699 6.89351 7.48407 7.68325 7.75117 7.89200 8.55805 8.94585 9.49234 11.00688 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.032535 B = 0.004165 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.400833 B = 6720.629867 C = 7413.266764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.513 4.513 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.529 5.529 11 C 0.066 3.934 12 C 0.048 3.952 13 N -0.476 5.476 14 C 0.036 3.964 15 C 0.113 3.887 16 N -0.494 5.494 17 C 0.277 3.723 18 N -0.497 5.497 19 C 0.200 3.800 20 Cl -0.003 7.003 21 C 0.057 3.943 22 C 0.054 3.946 23 H 0.264 0.736 24 H -0.009 1.009 25 H 0.026 0.974 26 H 0.034 0.966 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.182 0.818 31 H 0.204 0.796 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.389 -12.983 1.944 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.551 4.551 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.254 5.254 11 C -0.062 4.062 12 C -0.079 4.079 13 N -0.192 5.192 14 C -0.069 4.069 15 C -0.056 4.056 16 N -0.207 5.207 17 C -0.011 4.011 18 N -0.213 5.213 19 C 0.024 3.976 20 Cl 0.025 6.975 21 C -0.068 4.068 22 C -0.075 4.075 23 H 0.074 0.926 24 H 0.009 0.991 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.119 0.881 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.199 0.801 31 H 0.220 0.780 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.634 -13.578 1.922 20.055 hybrid contribution 0.315 1.966 0.151 1.997 sum 14.949 -11.612 2.073 19.042 Atomic orbital electron populations 1.69885 1.06132 1.26950 1.50757 1.24887 0.94724 0.98865 0.94712 0.86876 0.80313 0.84034 0.78626 1.20123 1.21159 1.19260 1.20991 0.88583 0.94733 1.50762 0.90121 1.20165 0.97167 0.83667 0.95316 1.62153 1.10093 1.19563 1.33588 1.22053 1.02454 0.90581 0.91124 1.22584 0.83963 0.99939 1.01375 1.59273 1.16594 1.09138 1.34185 1.20499 0.93199 0.92572 1.00600 1.23741 1.01356 0.86428 0.94121 1.68294 1.16673 1.23622 1.12155 1.24810 0.84107 0.98273 0.93885 1.67753 1.41066 0.98774 1.13697 1.21808 0.87577 0.89644 0.98592 1.98423 1.58892 1.44427 1.95733 1.22480 1.01367 0.95360 0.87602 1.22133 0.90426 0.93717 1.01262 0.92580 0.99103 0.95647 0.94734 0.88074 0.92236 0.89844 0.80146 0.78002 0.92721 0.89708 0.90138 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.96 55.43 0.77 -25.92 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 20.84 27.47 -169.99 -4.67 16.17 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.51 -13.85 9.03 -34.45 -0.31 -14.16 16 8 H 0.08 2.36 7.37 -52.48 -0.39 1.97 16 9 C 0.16 3.74 3.79 -4.98 -0.02 3.72 16 10 N -0.53 -10.19 4.70 -235.91 -1.11 -11.30 16 11 C 0.07 1.15 5.43 -3.77 -0.02 1.13 16 12 C 0.05 0.64 4.34 -3.76 -0.02 0.63 16 13 N -0.48 -6.33 4.44 -170.66 -0.76 -7.08 16 14 C 0.04 0.45 5.43 -83.43 -0.45 -0.01 16 15 C 0.11 1.29 10.12 -17.00 -0.17 1.11 16 16 N -0.49 -5.64 10.43 -14.44 -0.15 -5.79 16 17 C 0.28 2.87 12.28 -92.16 -1.13 1.74 16 18 N -0.50 -6.01 10.43 -11.53 -0.12 -6.13 16 19 C 0.20 2.52 7.17 -16.88 -0.12 2.40 16 20 Cl 0.00 -0.04 26.36 -51.86 -1.37 -1.41 16 21 C 0.06 0.76 5.28 -3.76 -0.02 0.74 16 22 C 0.05 0.85 5.61 -3.76 -0.02 0.83 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H -0.01 -0.20 7.18 -51.93 -0.37 -0.58 16 25 H 0.03 0.59 7.45 -51.92 -0.39 0.20 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.10 1.93 6.79 -51.93 -0.35 1.58 16 28 H 0.06 0.78 7.16 -51.93 -0.37 0.41 16 29 H 0.08 0.96 7.73 -51.93 -0.40 0.56 16 30 H 0.18 1.75 6.05 -52.49 -0.32 1.44 16 31 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.04 5.57 -51.93 -0.29 0.76 16 34 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 296.64 15.07 4.47 4.47 Total: -1.00 -30.04 296.64 -9.47 -39.51 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -4.16 Total: -2.51 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.38 Total: -0.01 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -1.36 Total: -56.22 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.37 Total: -1.41 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.04 -9.47 -39.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056245.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.783 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds