Wall clock time and date at job start Tue Mar 31 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00133 * 2 1 4 4 H 1.07992 * 120.00276 * 187.80248 * 3 2 1 5 5 C 1.38858 * 119.99436 * 7.52549 * 3 2 1 6 6 N 1.31526 * 120.00298 * 354.96459 * 5 3 2 7 7 Si 1.86805 * 119.99391 * 174.97001 * 5 3 2 8 8 H 1.48500 * 109.47033 * 60.00060 * 7 5 3 9 9 H 1.48506 * 109.46803 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47268 * 299.99666 * 7 5 3 11 11 C 1.38521 * 120.00187 * 179.97438 * 2 1 3 12 12 N 1.32997 * 120.52308 * 94.62401 * 11 2 1 13 13 C 1.31837 * 120.58324 * 180.02562 * 12 11 2 14 14 Cl 1.73599 * 119.10521 * 180.10347 * 13 12 11 15 15 N 1.31871 * 121.78729 * 0.08222 * 13 12 11 16 16 C 1.32853 * 121.07466 * 359.96029 * 15 13 12 17 17 C 1.37543 * 119.12175 * 359.62444 * 16 15 13 18 18 C 1.50317 * 122.16100 * 180.16041 * 17 16 15 19 19 N 1.46731 * 110.44154 * 343.04877 * 18 17 16 20 20 C 1.46901 * 110.99979 * 288.50589 * 19 18 17 21 21 C 1.47154 * 110.32407 * 51.97891 * 19 18 17 22 22 C 1.50551 * 119.21333 * 179.75151 * 16 15 13 23 23 H 1.09002 * 109.47455 * 56.52494 * 1 2 3 24 24 H 1.09004 * 109.47206 * 176.52479 * 1 2 3 25 25 H 1.09010 * 109.47520 * 296.52386 * 1 2 3 26 26 H 0.97003 * 120.00120 * 179.97438 * 6 5 3 27 27 H 1.09000 * 109.46225 * 222.63811 * 18 17 16 28 28 H 1.09004 * 108.95853 * 103.14257 * 18 17 16 29 29 H 1.08998 * 109.46788 * 187.04331 * 20 19 18 30 30 H 1.09007 * 109.46858 * 307.04047 * 20 19 18 31 31 H 1.08996 * 109.47119 * 67.03918 * 20 19 18 32 32 H 1.09001 * 109.60438 * 169.23452 * 21 19 18 33 33 H 1.09000 * 109.75141 * 48.80690 * 21 19 18 34 34 H 1.08997 * 109.41008 * 283.26366 * 22 16 15 35 35 H 1.09004 * 109.40271 * 43.02519 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2221 1.1902 -0.1270 5 6 1.4643 2.3832 0.1575 6 7 0.1500 2.3870 0.2073 7 14 2.4091 3.9885 0.2985 8 1 3.2174 4.1967 -0.9297 9 1 1.4526 5.1134 0.4576 10 1 3.3080 3.9318 1.4791 11 6 2.1576 -1.1996 0.0005 12 7 2.5754 -1.7389 -1.1412 13 6 3.2342 -2.8808 -1.1421 14 17 3.7640 -3.5488 -2.6543 15 7 3.5021 -3.5291 -0.0254 16 6 3.1163 -3.0530 1.1534 17 6 2.4335 -1.8601 1.2025 18 6 1.9683 -1.2572 2.4985 19 7 1.9777 -2.2649 3.5650 20 6 0.8995 -3.2441 3.3736 21 6 3.2889 -2.9299 3.6283 22 6 3.4397 -3.8306 2.4013 23 1 -0.3634 0.5668 -0.8572 24 1 -0.3634 -1.0258 -0.0623 25 1 -0.3634 0.4590 0.9196 26 1 -0.3288 3.2234 0.3177 27 1 0.9565 -0.8705 2.3766 28 1 2.6367 -0.4396 2.7688 29 1 0.8498 -3.9036 4.2400 30 1 -0.0502 -2.7212 3.2600 31 1 1.0988 -3.8338 2.4789 32 1 3.3499 -3.5327 4.5344 33 1 4.0816 -2.1817 3.6326 34 1 2.7584 -4.6770 2.4875 35 1 4.4648 -4.1966 2.3445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165094983.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:20 Heat of formation + Delta-G solvation = 89.350143 kcal Electronic energy + Delta-G solvation = -20692.268724 eV Core-core repulsion = 17559.811754 eV Total energy + Delta-G solvation = -3132.456970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.094 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.06899 -38.14570 -36.63908 -36.09275 -33.28268 -31.85220 -30.69326 -30.21249 -27.24259 -26.33615 -25.06537 -23.65682 -23.32514 -21.29821 -19.77058 -17.79717 -17.37207 -16.44790 -15.83174 -15.18850 -15.04511 -14.73523 -14.36381 -13.88939 -13.81297 -13.34355 -13.17978 -12.68781 -12.23127 -12.03932 -11.76815 -11.48438 -11.43804 -11.20630 -11.12459 -10.99804 -10.89944 -10.77683 -10.71444 -10.39151 -10.16015 -9.79165 -8.97811 -8.79548 -8.52995 -8.27901 -7.49943 -5.96649 -3.48165 1.22443 1.47213 1.80503 3.27655 3.32068 3.33090 3.98588 4.02195 4.16384 4.39339 4.57776 4.91028 5.07322 5.12558 5.18344 5.22580 5.42824 5.49299 5.60880 5.67633 5.77925 5.90509 5.92741 5.98817 6.05395 6.35512 6.47311 6.66653 7.08255 7.13527 7.23800 7.45128 7.47944 7.62135 8.05168 8.43071 8.89189 9.52597 9.83647 11.01951 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.013769 B = 0.007576 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.126552 B = 3695.146156 C = 4989.455562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.172 3.828 2 N -0.544 5.544 3 C -0.265 4.265 4 H 0.077 0.923 5 C 0.017 3.983 6 N -0.906 5.906 7 Si 0.921 3.079 8 H -0.281 1.281 9 H -0.286 1.286 10 H -0.279 1.279 11 C 0.477 3.523 12 N -0.528 5.528 13 C 0.367 3.633 14 Cl -0.007 7.007 15 N -0.531 5.531 16 C 0.178 3.822 17 C -0.219 4.219 18 C 0.115 3.885 19 N -0.530 5.530 20 C 0.017 3.983 21 C 0.052 3.948 22 C -0.103 4.103 23 H 0.057 0.943 24 H -0.006 1.006 25 H 0.063 0.937 26 H 0.259 0.741 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 -10.735 5.567 12.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.264 5.264 3 C -0.392 4.392 4 H 0.095 0.905 5 C -0.182 4.182 6 N -0.550 5.550 7 Si 0.750 3.250 8 H -0.207 1.207 9 H -0.211 1.211 10 H -0.205 1.205 11 C 0.239 3.761 12 N -0.250 5.250 13 C 0.071 3.929 14 Cl 0.020 6.980 15 N -0.250 5.250 16 C 0.035 3.965 17 C -0.230 4.230 18 C -0.014 4.014 19 N -0.251 5.251 20 C -0.132 4.132 21 C -0.077 4.077 22 C -0.142 4.142 23 H 0.075 0.925 24 H 0.012 0.988 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.247 -10.683 5.064 12.260 hybrid contribution 0.447 0.681 -0.677 1.059 sum 3.694 -10.001 4.388 11.529 Atomic orbital electron populations 1.21269 0.78430 0.93894 1.03485 1.41621 1.03104 0.98278 1.83392 1.19148 0.91444 0.82336 1.46267 0.90515 1.24904 0.95801 0.98171 0.99341 1.70151 1.05276 1.26161 1.53414 0.86077 0.78675 0.81886 0.78407 1.20702 1.21113 1.20487 1.18441 0.85082 0.86787 0.85810 1.68337 1.12256 1.10181 1.34189 1.22768 0.93662 0.88730 0.87750 1.98382 1.88151 1.84115 1.27310 1.67640 1.23965 1.35833 0.97516 1.20879 0.91697 0.91517 0.92398 1.22518 1.02614 0.97744 1.00097 1.20855 1.03791 0.93472 0.83233 1.62716 1.03283 1.14771 1.44365 1.22472 0.94994 0.95541 1.00156 1.22287 0.92210 0.97067 0.96133 1.21020 1.03782 0.98625 0.90796 0.92462 0.98773 0.91865 0.93050 0.88174 0.88429 0.91393 0.91179 0.95269 0.89500 0.90047 0.89228 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.06 8.22 59.85 0.49 4.55 16 2 N -0.54 -13.34 2.31 -122.16 -0.28 -13.63 16 3 C -0.26 -6.97 9.79 -15.04 -0.15 -7.11 16 4 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 5 C 0.02 0.43 5.46 -17.45 -0.10 0.34 16 6 N -0.91 -24.08 9.46 55.49 0.52 -23.56 16 7 Si 0.92 20.81 29.56 -169.99 -5.02 15.79 16 8 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 9 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 C 0.48 10.75 5.98 -154.69 -0.93 9.82 16 12 N -0.53 -12.03 10.44 -10.83 -0.11 -12.14 16 13 C 0.37 7.41 8.18 -92.05 -0.75 6.65 16 14 Cl -0.01 -0.12 29.27 -51.86 -1.52 -1.64 16 15 N -0.53 -9.96 10.31 -8.10 -0.08 -10.04 16 16 C 0.18 3.07 5.99 -82.48 -0.49 2.58 16 17 C -0.22 -4.17 5.39 -104.44 -0.56 -4.73 16 18 C 0.12 1.99 5.19 -5.25 -0.03 1.96 16 19 N -0.53 -7.38 5.28 -244.56 -1.29 -8.67 16 20 C 0.02 0.21 8.95 60.07 0.54 0.74 16 21 C 0.05 0.61 6.04 -3.71 -0.02 0.58 16 22 C -0.10 -1.30 5.42 -27.98 -0.15 -1.45 16 23 H 0.06 1.48 7.15 -51.93 -0.37 1.11 16 24 H -0.01 -0.14 7.90 -51.93 -0.41 -0.55 16 25 H 0.06 1.53 6.90 -51.92 -0.36 1.17 16 26 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 27 H 0.10 1.88 6.92 -51.93 -0.36 1.52 16 28 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 31 H 0.03 0.39 5.44 -51.93 -0.28 0.10 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 34 H 0.09 1.04 6.78 -51.93 -0.35 0.69 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 298.41 15.07 4.50 4.50 Total: -1.00 -27.95 298.41 -9.64 -37.60 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.20 Total: -2.15 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: -2.15 Total: 13.94 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -1.24 Total: -68.03 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.52 Total: -1.64 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.95 -9.64 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165094983.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.948 kcal (2) G-P(sol) polarization free energy of solvation -27.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds